mRNA_Ecto-sp13_S_contig12328.1948.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12328.1948.1
Unique NamemRNA_Ecto-sp13_S_contig12328.1948.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12328.1948.1 vs. uniprot
Match: D8LGY5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY5_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 1.010e-132
Identity = 185/193 (95.85%), Postives = 188/193 (97.41%), Query Frame = 1 
Query:   25 IRQKKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPHGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCHHREAVPPRSPRCSSFTDRRQRTSAAPAAEPPRA 603
            +  +KTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYP GYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQC+ REA PPRSPRCSSFTDRRQRTSAAPAAEPPRA
Sbjct:   31 LANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFTDRRQRTSAAPAAEPPRA 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12328.1948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY5_ECTSI1.010e-13295.85C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12328contigEcto-sp13_S_contig12328:2392..4674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size777
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-14_001450.1
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462656.2795286-CDS-Ecto-sp13_S_contig12328:2391..28041681462656.2795286-CDS-Ecto-sp13_S_contig12328:2391..2804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12328 2392..2804 -
1681462656.2887383-CDS-Ecto-sp13_S_contig12328:3441..36561681462656.2887383-CDS-Ecto-sp13_S_contig12328:3441..3656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12328 3442..3656 -
1681462656.2971504-CDS-Ecto-sp13_S_contig12328:3966..40301681462656.2971504-CDS-Ecto-sp13_S_contig12328:3966..4030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12328 3967..4030 -
1681462656.305562-CDS-Ecto-sp13_S_contig12328:4589..46741681462656.305562-CDS-Ecto-sp13_S_contig12328:4589..4674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12328 4590..4674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12328.1948.1prot_Ecto-sp13_S_contig12328.1948.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12328 2392..4674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12328.1948.1

>prot_Ecto-sp13_S_contig12328.1948.1 ID=prot_Ecto-sp13_S_contig12328.1948.1|Name=mRNA_Ecto-sp13_S_contig12328.1948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MVHLIDCSIRQKKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEA
IARSVSEDSGSCPSSRDTSLSSRCGGVIGRVPHSPCERRLPTFVDLSTGN
TPVRGSRHTRHWSSPATRYPHGYYSNGQPRTPHHQRSRSYPSPSSSDFSD
SYGFGVAVDAPPVSPQCHHREAVPPRSPRCSSFTDRRQRTSAAPAAEPPR
APPGGHGGRYARRVVYSSGSSPAGRAAPASPASWAHAGTRQQPGGGGGGG
GGGGRTGAN
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mRNA from alignment at Ecto-sp13_S_contig12328:2392..4674-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12328.1948.1 ID=mRNA_Ecto-sp13_S_contig12328.1948.1|Name=mRNA_Ecto-sp13_S_contig12328.1948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2283bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12328:2392..4674- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCACTTGATCGATTGTTCTATTCGCCAAAAAAAGACGGAGATTTG
CCTTCACTGGCAGACGGGAACGTGCCCATACGGAGGTGAGTCTTGTACCC
TACCACGACCTCCTGCTCGGAAATAAAGGGGCCATTCGGATTTTCACGTT
TGTTTCCGAAAATTCAGACCATTTTTCAAAGCATGGTTGTGCGCAGCAAC
ATCATGCATGATGTTGACTACGACTGCTTGTTCGACAAGAAGACTTGTAC
GTACTGTCGAAGAATAATAGCTTCGACTTGGTGGTATCGTGCATCTTCTT
TTCCACCCTCCAATCGCGTGTTTCGTAAACACGACGACCCGTCGAGCAGG
AGACAGTCGTACTGGTGCCAGGGTTTGGGGGTGATGGACGTCGTGGGAGT
TTCGTCGTTATCCTCAAAAGACGTCAAAAACAACGTGGAGAGGGTCGAGT
AGGGGGCAGTACATCATACATCATTTTTTTCGTCATGTAGCATTGCAGTG
TAGCCAACAGGGTAACGATGTTCGGTTTCGACCGCCTCAAAGAACGAGCG
CCACGTTGTTGAGCTCCACCGGTCCATGGCCTTATTTCAACCGCTTCGTT
CTCTGTTCCGTGTGCTTACCCCTGACCGATGACGCTGCTCGCAGCGGGCA
GCTGCGCCTTCGCTCACGGGCTCGGTGAACTACGGCACCCGACGCTCGAC
GATGAAGCGTGAGTGTACCATCAAAGTACAGCAGTGACAACGATGGTATT
TGTTTTGGACAGTTGCCAGTTGTCGCCTACTGATCTCCACCTATGTAGTT
AATCGACGGCCTTTGACCAACTCGTACGCGGCACGCGTCGGTCCTTTGAA
CCGATTCCACTGTCATTGCCTGGAACCAACCCTCGCCGTACTTTCAGCCA
CCTACCTTTCTCCGCTCCTTGTCCAACAAACATCGTCAAACTCACTCTAA
ACCCAATCACATCCCCGTATGTACCTTCCTCTGTACCTCCTCTCTTCTTG
TCTTTCTTCTTTTTGAAGGATTGCCAGAAGCGTCAGTGAAGACAGCGGCT
CTTGCCCTTCGTCGCGAGACACATCTCTTTCCTCTCGGTGCGGCGGGGTT
ATCGGACGGGTACCCCACTCCCCCTGCGAGCGCCGCCTCCCTACCTTCGT
GGACCTCAGCACCGGAAACACCCCCGTGCGAGGTTCCCGGCACACCAGGC
ACTGGTCTTCCCCTGCCACGCGGTACCCCCATGGTGAGAATAGTGACGAG
ACCCGTTCTCTTTCGGGGGAGGGTACTCTTGGAAGCGCACACTCTGTAAT
GCCGGGGCGGAGCGATATGCGCCGGGTTTTCGCCGGCCCATAAAGCTGGT
TGTCATCCTTGCATTGCTTTGTCAAACCGGGAATGCCATGGGTTGGTCGG
GTATCCCGGCTAACCAGACGTTTCATGGTCGGCAGGGAACGGGGCGGAGA
GGTTGCAATGGTCATCGCGCAGAATTGTCGGAAAAGCGGAGGCAACTGTT
GTGTCTAAGTGCTTTCTGCTGCGCTTTCGAGAGAGGATTTACATGGCCAC
TGTCGGTGTGTCGTCACACGCCAAGGCTCTTCCGCTGACAGCATGACGAC
GCCTCCTCCAACATGAGCGGAAACGCTTCGGACAGACAGGACAGAACAAG
TGGTAGTTTATTTCAAGGCCTCCGCGAGAGAATAGGACGCGTATTGGAGC
ACGACCAAAACACGTGTAGTAACGAAGGTGAAAGGGCCGCCACCAAAACT
GACGATGATACTCCGATGCGTGTACAGCCGAACCGCACAGTCAGCTCACG
TGAGCGCAGCAAGCAAACCTGTAACTTCTTCAACTTGCGCTTTCGTGCGT
GTGGCATGCCGATACCCCAGGCTACTACTCGAACGGCCAGCCCCGGACGC
CACACCACCAGCGCAGCCGTTCCTACCCCTCGCCGTCGTCGTCAGACTTC
TCCGACAGCTACGGTTTCGGCGTGGCCGTGGACGCCCCCCCGGTGTCGCC
ACAGTGCCACCATCGGGAGGCCGTCCCCCCCCGCTCCCCGAGGTGCTCCT
CCTTCACCGACCGCCGCCAGCGTACGTCTGCCGCGCCCGCGGCCGAGCCG
CCCAGAGCGCCGCCAGGGGGGCACGGTGGAAGGTACGCGAGGAGGGTGGT
CTACTCGTCCGGGTCGTCACCGGCGGGGAGAGCGGCCCCGGCGTCCCCCG
CATCCTGGGCGCACGCGGGTACGCGGCAGCAACCGGGGGGAGGGGGGGGC
GGCGGCGGCGGCGGCGGCCGCACGGGCGCGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12328:2392..4674-

>mRNA_Ecto-sp13_S_contig12328.1948.1 ID=mRNA_Ecto-sp13_S_contig12328.1948.1|Name=mRNA_Ecto-sp13_S_contig12328.1948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12328:2392..4674- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCACTTGATCGATTGTTCTATTCGCCAAAAAAAGACGGAGATTTG
CCTTCACTGGCAGACGGGAACGTGCCCATACGGAGCGGGCAGCTGCGCCT
TCGCTCACGGGCTCGGTGAACTACGGCACCCGACGCTCGACGATGAAGCG
ATTGCCAGAAGCGTCAGTGAAGACAGCGGCTCTTGCCCTTCGTCGCGAGA
CACATCTCTTTCCTCTCGGTGCGGCGGGGTTATCGGACGGGTACCCCACT
CCCCCTGCGAGCGCCGCCTCCCTACCTTCGTGGACCTCAGCACCGGAAAC
ACCCCCGTGCGAGGTTCCCGGCACACCAGGCACTGGTCTTCCCCTGCCAC
GCGGTACCCCCATGGCTACTACTCGAACGGCCAGCCCCGGACGCCACACC
ACCAGCGCAGCCGTTCCTACCCCTCGCCGTCGTCGTCAGACTTCTCCGAC
AGCTACGGTTTCGGCGTGGCCGTGGACGCCCCCCCGGTGTCGCCACAGTG
CCACCATCGGGAGGCCGTCCCCCCCCGCTCCCCGAGGTGCTCCTCCTTCA
CCGACCGCCGCCAGCGTACGTCTGCCGCGCCCGCGGCCGAGCCGCCCAGA
GCGCCGCCAGGGGGGCACGGTGGAAGGTACGCGAGGAGGGTGGTCTACTC
GTCCGGGTCGTCACCGGCGGGGAGAGCGGCCCCGGCGTCCCCCGCATCCT
GGGCGCACGCGGGTACGCGGCAGCAACCGGGGGGAGGGGGGGGCGGCGGC
GGCGGCGGCGGCCGCACGGGCGCGAAC
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