prot_Ecto-sp13_S_contig12312.1940.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12312.1940.1
Unique Nameprot_Ecto-sp13_S_contig12312.1940.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length250
Homology
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A6H5L1B5_9PHAE (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B5_9PHAE)

HSP 1 Score: 478 bits (1230), Expect = 2.230e-168
Identity = 236/250 (94.40%), Postives = 247/250 (98.80%), Query Frame = 0
Query:    1 MGEDIWSLVSRQLHATSSASPRKQQAEEVKDDGETEAPGEGGDPADSADKITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250
            MGEDIWSL+SRQL+ATSSA+ R+QQ EEVKDDGETEAPGEGGDPADSADKITA+CAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFH+AL+VIV+DLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKR TYAKLGRDHPDLR+VRPCPVPLV+VGNKYDVFKNQESARKRILAQALRFVAH+NGASLLFCS
Sbjct:    1 MGEDIWSLISRQLYATSSANTRQQQVEEVKDDGETEAPGEGGDPADSADKITALCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHNALFVIVLDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRTTYAKLGRDHPDLRSVRPCPVPLVMVGNKYDVFKNQESARKRILAQALRFVAHVNGASLLFCS 250          
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: D7FSG7_ECTSI (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG7_ECTSI)

HSP 1 Score: 476 bits (1226), Expect = 2.960e-166
Identity = 238/250 (95.20%), Postives = 244/250 (97.60%), Query Frame = 0
Query:    1 MGEDIWSLVSRQLHATSSASPRKQQAEEVKDDGETEAPGEGGDPADSADKITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250
            MGEDIWSLVSRQL+ATSS + R+QQA+EVKDDGE E PGEGGDPADSA KITAVCAFASYALCVGMPGAGKSTLLNTYLNP+NDSIPKPTVALEYMFARRASA NMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALY+IVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS
Sbjct:    1 MGEDIWSLVSRQLYATSSVNTRQQQADEVKDDGEAEVPGEGGDPADSAGKITAVCAFASYALCVGMPGAGKSTLLNTYLNPHNDSIPKPTVALEYMFARRASAANMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYIIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250          
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A835YX97_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX97_9STRA)

HSP 1 Score: 290 bits (742), Expect = 4.380e-93
Identity = 144/253 (56.92%), Postives = 186/253 (73.52%), Query Frame = 0
Query:    2 GEDIWSLVSRQLHA---TSSASPRKQQAEEVKDDGETEAPGEGGDPADSADKITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSI-PKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250
            G D+WS ++RQ++    T +++ R+  A +  DDG T A      PA +       C   SY LCVGMPG+GKS+LL+ YL P  + + PKPT+ALEY+FARRA+A N PKD+AHIWELGGG+H SDLV VPI    F  A Y++VVDLSRPS ++ H+  WTD+IKA VK  VREL K DPTFA+ LKR+TYAK GR+HPDL+ V+PCPVPL+ V NKYDVF++ +SAR+R++ QALRF+AH+NGA+LL CS
Sbjct:   16 GNDVWSRLTRQVYGESGTDASAARQAAASDPADDGGTAA------PATTVSANAGSC-VESYTLCVGMPGSGKSSLLSAYLTPTKEDLNPKPTIALEYLFARRATASNSPKDIAHIWELGGGAHTSDLVAVPIGAHNFSTACYIVVVDLSRPSDIVAHITHWTDRIKASVKGAVRELAKADPTFADGLKRRTYAKFGREHPDLKIVKPCPVPLIFVANKYDVFRDSDSARRRLVGQALRFLAHVNGATLLCCS 261          
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A7S2FGJ4_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FGJ4_9STRA)

HSP 1 Score: 209 bits (532), Expect = 9.050e-63
Identity = 100/189 (52.91%), Postives = 133/189 (70.37%), Query Frame = 0
Query:   59 SYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLL 247
            +Y L VG   AGKS+L+  + NP  D  PKPTVALEY+FARR++APN PKDVAHIWELGGGS + +LV VPITP      +  I+VDLS+P+++IP L +W D I+A V  CV  L + +P  A  L+     ++  DH D R VRP  +PL+I+ NKYD++K+ ES +K+ ++QALRFVAH NGA+LL
Sbjct:    7 TYTLFVGQRQAGKSSLITAFHNPTKDDTPKPTVALEYLFARRSAAPNQPKDVAHIWELGGGSKLRNLVSVPITPQNITSNVVAIIVDLSQPANLIPDLCEWIDIIRARVDECVATLKQTNPEAASALEESASLRIPADHADARVVRPMTIPLLIIANKYDIYKDMESVQKKTISQALRFVAHSNGATLL 195          
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A7S2F733_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F733_9STRA)

HSP 1 Score: 193 bits (490), Expect = 3.480e-56
Identity = 94/200 (47.00%), Postives = 133/200 (66.50%), Query Frame = 0
Query:   48 ADKITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLL 247
            A K   +    ++ L VG   +GKS+L+  + NP+ D  PKPT ALEY+FAR++++PN PKDVAHIWELGGGS +  LV VPITP+   + + VIVVDLS+P  ++P L++W   IK  V  C+ EL K D   A  L  K   ++  DHPD  +V+P  +P++I+ NKYD FK+ ES +K+ ++ ALRF AH++ A+LL
Sbjct:    2 ASKSAQIPRMETFTLFVGQKESGKSSLITAFHNPSKDESPKPTTALEYLFARKSTSPNQPKDVAHIWELGGGSKLRKLVSVPITPESLPNVVAVIVVDLSKPIDLVPALVEWIGIIKERVSECLIELQKTDEGAARALGEKAKGRMAADHPDSSSVKPFAIPVIIIANKYDKFKSFESIQKKAISLALRFFAHLHSATLL 201          
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A401SRJ5_CHIPU (Cytoplasmic dynein 2 light intermediate chain 1 n=6 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SRJ5_CHIPU)

HSP 1 Score: 172 bits (436), Expect = 9.240e-49
Identity = 84/183 (45.90%), Postives = 122/183 (66.67%), Query Frame = 0
Query:   68 GAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250
            G GK+T++  +L+   D IPKPT+ALEY F RRA   N PKD+AH WELGGG+ +SDL ++PIT D       V+V+DLS+P+ +   + +  +  K  +   + ELGK+D       K+KT+  L R+HPD   + P P+PLVI+G+KYD+F++ ES +++++ + LRFVAH  GASLLF S
Sbjct:   11 GLGKTTIILRFLD--RDEIPKPTLALEYTFGRRAKGHNTPKDIAHFWELGGGTSLSDLAQIPITIDSIRTISIVLVLDLSKPNDLWLSMEKLLNVTKNHINSTINELGKKDSINVNDFKQKTWKTLQRNHPDWELIDPFPIPLVIIGSKYDIFQDFESEKRKVICKTLRFVAHYYGASLLFFS 191          
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A401PMG5_SCYTO (Cytoplasmic dynein 2 light intermediate chain 1 n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401PMG5_SCYTO)

HSP 1 Score: 170 bits (431), Expect = 1.150e-47
Identity = 82/187 (43.85%), Postives = 123/187 (65.78%), Query Frame = 0
Query:   64 VGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250
            VG    GK+T++  +L+   D IPKPT+ALEY F RRA   N PKD+AH WELGGG+ +SDL ++PIT D       V+V+DLS+P+ +   + +     +  +   + ELG++D      +K++T+  L R+HPD   + P P+PLVI+G+KYD+F++ ES +++++ + LRFVAH  GASLLF S
Sbjct:   39 VGNKSGGKTTIILRFLD--RDEIPKPTLALEYTFGRRAKGHNTPKDIAHFWELGGGTSLSDLAQIPITIDSIRTLSIVLVLDLSKPNDLWTSMEKLLIVTRNHINTAINELGRKDSINVNDIKQRTWKTLQRNHPDWELIDPFPIPLVIIGSKYDIFQDFESEKRKVICKTLRFVAHYCGASLLFFS 223          
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A6P8QYK3_GEOSA (Cytoplasmic dynein 2 light intermediate chain 1 n=5 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8QYK3_GEOSA)

HSP 1 Score: 169 bits (429), Expect = 1.460e-47
Identity = 81/187 (43.32%), Postives = 122/187 (65.24%), Query Frame = 0
Query:   64 VGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250
            +G    GK+T++   L+   D  PKPT+ALEY F RRA   NMPKD+AH WELGGG+ + DL+R+PIT D       V+V+DLS+P+ + P +       ++ V   + ELGK+    A  +K+K +  + +DHPD   + P P+PLVIVG+KYD+F++ +S +++++ + LRF+AH  GASL+F S
Sbjct:   41 IGNKNGGKTTIILRCLD--RDEPPKPTLALEYTFGRRAKGHNMPKDIAHFWELGGGTSLLDLIRIPITLDSMRSFSIVLVLDLSKPNDLWPTMENLLQVTRSHVNKLISELGKKHSRIANEIKQKMWKPMQKDHPDRELIDPFPIPLVIVGSKYDIFQDFDSEKRKVICKTLRFLAHYYGASLMFTS 225          
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A4W3GVJ0_CALMI (Cytoplasmic dynein 2 light intermediate chain 1 n=3 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GVJ0_CALMI)

HSP 1 Score: 169 bits (428), Expect = 3.200e-47
Identity = 82/187 (43.85%), Postives = 121/187 (64.71%), Query Frame = 0
Query:   64 VGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250
            +G    GK+T++  +L+   D +PKPT+ALEY F RRA   N PKD+AH WELGGG+ + DL+ +PI  D   D   V+V+DLS+P+ +   + +     +  +   + ELGK+D   A   K++ +  L +DHPD   V P PVPLVI+GNKYD+F++ +S +++++ + LRFVAH  GASLLF S
Sbjct:   38 LGNKSGGKTTIILRFLD--RDEVPKPTLALEYTFGRRAKGHNTPKDIAHFWELGGGTSLVDLIEIPINMDSIRDLSVVLVLDLSKPNDLWTSMEKLLTAARRHIDNVLNELGKKDSKTANQWKQRAWKTLQKDHPDWELVDPFPVPLVIIGNKYDIFQDFDSEQRKVICKTLRFVAHYYGASLLFFS 222          
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A8J6A3U1_GALPY (Cytoplasmic dynein 2 light intermediate chain 1 (Fragment) n=5 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8J6A3U1_GALPY)

HSP 1 Score: 168 bits (425), Expect = 4.360e-47
Identity = 78/187 (41.71%), Postives = 123/187 (65.78%), Query Frame = 0
Query:   64 VGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250
            +G    GK+T++   L+   D  PKPT+ALEY + RRA   N+PKD+AH WELGGG+ + DL+ +PIT D       V+V+DLS+P+ + P +       K+ V   + +LGK +P  A  +++K ++ + +DHPD   + P P+PLVI+G+KYD+F++ +S +++++ + LRFVAH  GASL+F S
Sbjct:   34 IGSKNGGKTTIILRCLD--RDEPPKPTLALEYTYGRRAKGHNIPKDIAHFWELGGGTSLLDLISIPITSDTLRTFSIVLVLDLSKPNDLWPTMENLLQSTKSHVDKVIMKLGKTNPKAASEMRQKIWSNMQKDHPDRELIDPFPIPLVIIGSKYDIFQDFDSEKRKVICKTLRFVAHYYGASLMFTS 218          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1B5_9PHAE2.230e-16894.40Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
D7FSG7_ECTSI2.960e-16695.20Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A835YX97_9STRA4.380e-9356.92Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A7S2FGJ4_9STRA9.050e-6352.91Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A7S2F733_9STRA3.480e-5647.00Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A401SRJ5_CHIPU9.240e-4945.90Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A401PMG5_SCYTO1.150e-4743.85Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A6P8QYK3_GEOSA1.460e-4743.32Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A4W3GVJ0_CALMI3.200e-4743.85Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A8J6A3U1_GALPY4.360e-4741.71Cytoplasmic dynein 2 light intermediate chain 1 (F... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF08477Roccoord: 62..167
e-value: 3.9E-6
score: 27.1
IPR040045Cytoplasmic dynein 2 light intermediate chain 1PANTHERPTHR13236DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2coord: 62..250
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 62..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12312contigEcto-sp13_S_contig12312:3..2314 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12312.1940.1mRNA_Ecto-sp13_S_contig12312.1940.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12312 3..2314 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12312.1940.1 ID=prot_Ecto-sp13_S_contig12312.1940.1|Name=mRNA_Ecto-sp13_S_contig12312.1940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
MGEDIWSLVSRQLHATSSASPRKQQAEEVKDDGETEAPGEGGDPADSADK
ITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARR
ASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPS
SVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDL
RAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040045DYNC2LI1
IPR027417P-loop_NTPase