mRNA_Ecto-sp13_S_contig12312.1940.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12312.1940.1
Unique NamemRNA_Ecto-sp13_S_contig12312.1940.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A6H5L1B5_9PHAE (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B5_9PHAE)

HSP 1 Score: 478 bits (1230), Expect = 2.230e-168
Identity = 236/250 (94.40%), Postives = 247/250 (98.80%), Query Frame = 1 
Query:    1 MGEDIWSLVSRQLHATSSASPRKQQAEEVKDDGETEAPGEGGDPADSADKITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 750
            MGEDIWSL+SRQL+ATSSA+ R+QQ EEVKDDGETEAPGEGGDPADSADKITA+CAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFH+AL+VIV+DLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKR TYAKLGRDHPDLR+VRPCPVPLV+VGNKYDVFKNQESARKRILAQALRFVAH+NGASLLFCS
Sbjct:    1 MGEDIWSLISRQLYATSSANTRQQQVEEVKDDGETEAPGEGGDPADSADKITALCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHNALFVIVLDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRTTYAKLGRDHPDLRSVRPCPVPLVMVGNKYDVFKNQESARKRILAQALRFVAHVNGASLLFCS 250
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: D7FSG7_ECTSI (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG7_ECTSI)

HSP 1 Score: 476 bits (1226), Expect = 2.960e-166
Identity = 238/250 (95.20%), Postives = 244/250 (97.60%), Query Frame = 1 
Query:    1 MGEDIWSLVSRQLHATSSASPRKQQAEEVKDDGETEAPGEGGDPADSADKITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 750
            MGEDIWSLVSRQL+ATSS + R+QQA+EVKDDGE E PGEGGDPADSA KITAVCAFASYALCVGMPGAGKSTLLNTYLNP+NDSIPKPTVALEYMFARRASA NMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALY+IVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS
Sbjct:    1 MGEDIWSLVSRQLYATSSVNTRQQQADEVKDDGEAEVPGEGGDPADSAGKITAVCAFASYALCVGMPGAGKSTLLNTYLNPHNDSIPKPTVALEYMFARRASAANMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYIIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 250
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A835YX97_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX97_9STRA)

HSP 1 Score: 290 bits (742), Expect = 4.380e-93
Identity = 144/253 (56.92%), Postives = 186/253 (73.52%), Query Frame = 1 
Query:    4 GEDIWSLVSRQLHA---TSSASPRKQQAEEVKDDGETEAPGEGGDPADSADKITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSI-PKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 750
            G D+WS ++RQ++    T +++ R+  A +  DDG T A      PA +       C   SY LCVGMPG+GKS+LL+ YL P  + + PKPT+ALEY+FARRA+A N PKD+AHIWELGGG+H SDLV VPI    F  A Y++VVDLSRPS ++ H+  WTD+IKA VK  VREL K DPTFA+ LKR+TYAK GR+HPDL+ V+PCPVPL+ V NKYDVF++ +SAR+R++ QALRF+AH+NGA+LL CS
Sbjct:   16 GNDVWSRLTRQVYGESGTDASAARQAAASDPADDGGTAA------PATTVSANAGSC-VESYTLCVGMPGSGKSSLLSAYLTPTKEDLNPKPTIALEYLFARRATASNSPKDIAHIWELGGGAHTSDLVAVPIGAHNFSTACYIVVVDLSRPSDIVAHITHWTDRIKASVKGAVRELAKADPTFADGLKRRTYAKFGREHPDLKIVKPCPVPLIFVANKYDVFRDSDSARRRLVGQALRFLAHVNGATLLCCS 261
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A7S2FGJ4_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FGJ4_9STRA)

HSP 1 Score: 209 bits (532), Expect = 9.050e-63
Identity = 100/189 (52.91%), Postives = 133/189 (70.37%), Query Frame = 1 
Query:  175 SYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLL 741
            +Y L VG   AGKS+L+  + NP  D  PKPTVALEY+FARR++APN PKDVAHIWELGGGS + +LV VPITP      +  I+VDLS+P+++IP L +W D I+A V  CV  L + +P  A  L+     ++  DH D R VRP  +PL+I+ NKYD++K+ ES +K+ ++QALRFVAH NGA+LL
Sbjct:    7 TYTLFVGQRQAGKSSLITAFHNPTKDDTPKPTVALEYLFARRSAAPNQPKDVAHIWELGGGSKLRNLVSVPITPQNITSNVVAIIVDLSQPANLIPDLCEWIDIIRARVDECVATLKQTNPEAASALEESASLRIPADHADARVVRPMTIPLLIIANKYDIYKDMESVQKKTISQALRFVAHSNGATLL 195
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A7S2F733_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F733_9STRA)

HSP 1 Score: 193 bits (490), Expect = 3.480e-56
Identity = 94/200 (47.00%), Postives = 133/200 (66.50%), Query Frame = 1 
Query:  142 ADKITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLL 741
            A K   +    ++ L VG   +GKS+L+  + NP+ D  PKPT ALEY+FAR++++PN PKDVAHIWELGGGS +  LV VPITP+   + + VIVVDLS+P  ++P L++W   IK  V  C+ EL K D   A  L  K   ++  DHPD  +V+P  +P++I+ NKYD FK+ ES +K+ ++ ALRF AH++ A+LL
Sbjct:    2 ASKSAQIPRMETFTLFVGQKESGKSSLITAFHNPSKDESPKPTTALEYLFARKSTSPNQPKDVAHIWELGGGSKLRKLVSVPITPESLPNVVAVIVVDLSKPIDLVPALVEWIGIIKERVSECLIELQKTDEGAARALGEKAKGRMAADHPDSSSVKPFAIPVIIIANKYDKFKSFESIQKKAISLALRFFAHLHSATLL 201
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A401SRJ5_CHIPU (Cytoplasmic dynein 2 light intermediate chain 1 n=6 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SRJ5_CHIPU)

HSP 1 Score: 172 bits (436), Expect = 9.240e-49
Identity = 84/183 (45.90%), Postives = 122/183 (66.67%), Query Frame = 1 
Query:  202 GAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 750
            G GK+T++  +L+   D IPKPT+ALEY F RRA   N PKD+AH WELGGG+ +SDL ++PIT D       V+V+DLS+P+ +   + +  +  K  +   + ELGK+D       K+KT+  L R+HPD   + P P+PLVI+G+KYD+F++ ES +++++ + LRFVAH  GASLLF S
Sbjct:   11 GLGKTTIILRFLD--RDEIPKPTLALEYTFGRRAKGHNTPKDIAHFWELGGGTSLSDLAQIPITIDSIRTISIVLVLDLSKPNDLWLSMEKLLNVTKNHINSTINELGKKDSINVNDFKQKTWKTLQRNHPDWELIDPFPIPLVIIGSKYDIFQDFESEKRKVICKTLRFVAHYYGASLLFFS 191
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A401PMG5_SCYTO (Cytoplasmic dynein 2 light intermediate chain 1 n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401PMG5_SCYTO)

HSP 1 Score: 170 bits (431), Expect = 1.150e-47
Identity = 82/187 (43.85%), Postives = 123/187 (65.78%), Query Frame = 1 
Query:  190 VGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 750
            VG    GK+T++  +L+   D IPKPT+ALEY F RRA   N PKD+AH WELGGG+ +SDL ++PIT D       V+V+DLS+P+ +   + +     +  +   + ELG++D      +K++T+  L R+HPD   + P P+PLVI+G+KYD+F++ ES +++++ + LRFVAH  GASLLF S
Sbjct:   39 VGNKSGGKTTIILRFLD--RDEIPKPTLALEYTFGRRAKGHNTPKDIAHFWELGGGTSLSDLAQIPITIDSIRTLSIVLVLDLSKPNDLWTSMEKLLIVTRNHINTAINELGRKDSINVNDIKQRTWKTLQRNHPDWELIDPFPIPLVIIGSKYDIFQDFESEKRKVICKTLRFVAHYCGASLLFFS 223
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A6P8QYK3_GEOSA (Cytoplasmic dynein 2 light intermediate chain 1 n=5 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8QYK3_GEOSA)

HSP 1 Score: 169 bits (429), Expect = 1.460e-47
Identity = 81/187 (43.32%), Postives = 122/187 (65.24%), Query Frame = 1 
Query:  190 VGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 750
            +G    GK+T++   L+   D  PKPT+ALEY F RRA   NMPKD+AH WELGGG+ + DL+R+PIT D       V+V+DLS+P+ + P +       ++ V   + ELGK+    A  +K+K +  + +DHPD   + P P+PLVIVG+KYD+F++ +S +++++ + LRF+AH  GASL+F S
Sbjct:   41 IGNKNGGKTTIILRCLD--RDEPPKPTLALEYTFGRRAKGHNMPKDIAHFWELGGGTSLLDLIRIPITLDSMRSFSIVLVLDLSKPNDLWPTMENLLQVTRSHVNKLISELGKKHSRIANEIKQKMWKPMQKDHPDRELIDPFPIPLVIVGSKYDIFQDFDSEKRKVICKTLRFLAHYYGASLMFTS 225
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A4W3GVJ0_CALMI (Cytoplasmic dynein 2 light intermediate chain 1 n=3 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GVJ0_CALMI)

HSP 1 Score: 169 bits (428), Expect = 3.200e-47
Identity = 82/187 (43.85%), Postives = 121/187 (64.71%), Query Frame = 1 
Query:  190 VGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 750
            +G    GK+T++  +L+   D +PKPT+ALEY F RRA   N PKD+AH WELGGG+ + DL+ +PI  D   D   V+V+DLS+P+ +   + +     +  +   + ELGK+D   A   K++ +  L +DHPD   V P PVPLVI+GNKYD+F++ +S +++++ + LRFVAH  GASLLF S
Sbjct:   38 LGNKSGGKTTIILRFLD--RDEVPKPTLALEYTFGRRAKGHNTPKDIAHFWELGGGTSLVDLIEIPINMDSIRDLSVVLVLDLSKPNDLWTSMEKLLTAARRHIDNVLNELGKKDSKTANQWKQRAWKTLQKDHPDWELVDPFPVPLVIIGNKYDIFQDFDSEQRKVICKTLRFVAHYYGASLLFFS 222
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BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Match: A0A8J6A3U1_GALPY (Cytoplasmic dynein 2 light intermediate chain 1 (Fragment) n=5 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8J6A3U1_GALPY)

HSP 1 Score: 168 bits (425), Expect = 4.360e-47
Identity = 78/187 (41.71%), Postives = 123/187 (65.78%), Query Frame = 1 
Query:  190 VGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARRASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPSSVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS 750
            +G    GK+T++   L+   D  PKPT+ALEY + RRA   N+PKD+AH WELGGG+ + DL+ +PIT D       V+V+DLS+P+ + P +       K+ V   + +LGK +P  A  +++K ++ + +DHPD   + P P+PLVI+G+KYD+F++ +S +++++ + LRFVAH  GASL+F S
Sbjct:   34 IGSKNGGKTTIILRCLD--RDEPPKPTLALEYTYGRRAKGHNIPKDIAHFWELGGGTSLLDLISIPITSDTLRTFSIVLVLDLSKPNDLWPTMENLLQSTKSHVDKVIMKLGKTNPKAASEMRQKIWSNMQKDHPDRELIDPFPIPLVIIGSKYDIFQDFDSEKRKVICKTLRFVAHYYGASLMFTS 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12312.1940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1B5_9PHAE2.230e-16894.40Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
D7FSG7_ECTSI2.960e-16695.20Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A835YX97_9STRA4.380e-9356.92Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A7S2FGJ4_9STRA9.050e-6352.91Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A7S2F733_9STRA3.480e-5647.00Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A401SRJ5_CHIPU9.240e-4945.90Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A401PMG5_SCYTO1.150e-4743.85Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A6P8QYK3_GEOSA1.460e-4743.32Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A4W3GVJ0_CALMI3.200e-4743.85Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A8J6A3U1_GALPY4.360e-4741.71Cytoplasmic dynein 2 light intermediate chain 1 (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12312contigEcto-sp13_S_contig12312:3..2314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score484.2
Seed ortholog evalue3.7e-134
Seed eggNOG ortholog2880.D7FSG7
Preferred nameDYNC2LI1
Model size750
KEGG koko:K10417
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0030705,GO:0030990,GO:0031344,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033043,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045177,GO:0045504,GO:0046907,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0060491,GO:0065007,GO:0070925,GO:0071840,GO:0097014,GO:0097542,GO:0097546,GO:0097730,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1902494,GO:1905515
Exons4
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGsKOG3929@1,KOG3929@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-04_000800.2
Cds size750
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462655.6955135-CDS-Ecto-sp13_S_contig12312:2..891681462655.6955135-CDS-Ecto-sp13_S_contig12312:2..89Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12312 3..89 -
1681462655.7104027-CDS-Ecto-sp13_S_contig12312:627..7981681462655.7104027-CDS-Ecto-sp13_S_contig12312:627..798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12312 628..798 -
1681462655.7186227-CDS-Ecto-sp13_S_contig12312:1521..16891681462655.7186227-CDS-Ecto-sp13_S_contig12312:1521..1689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12312 1522..1689 -
1681462655.7266192-CDS-Ecto-sp13_S_contig12312:1990..23141681462655.7266192-CDS-Ecto-sp13_S_contig12312:1990..2314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12312 1991..2314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12312.1940.1prot_Ecto-sp13_S_contig12312.1940.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12312 3..2314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12312.1940.1

>prot_Ecto-sp13_S_contig12312.1940.1 ID=prot_Ecto-sp13_S_contig12312.1940.1|Name=mRNA_Ecto-sp13_S_contig12312.1940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
MGEDIWSLVSRQLHATSSASPRKQQAEEVKDDGETEAPGEGGDPADSADK
ITAVCAFASYALCVGMPGAGKSTLLNTYLNPNNDSIPKPTVALEYMFARR
ASAPNMPKDVAHIWELGGGSHVSDLVRVPITPDRFHDALYVIVVDLSRPS
SVIPHLLQWTDQIKACVKVCVRELGKRDPTFAETLKRKTYAKLGRDHPDL
RAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCS
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mRNA from alignment at Ecto-sp13_S_contig12312:3..2314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12312.1940.1 ID=mRNA_Ecto-sp13_S_contig12312.1940.1|Name=mRNA_Ecto-sp13_S_contig12312.1940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12312:3..2314- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGAGGACATCTGGAGCTTGGTATCTCGGCAGCTGCACGCCACCAG
CTCGGCCAGCCCCCGCAAGCAGCAAGCGGAAGAAGTGAAGGATGATGGCG
AAACTGAGGCGCCCGGCGAGGGAGGCGATCCTGCTGACTCGGCGGACAAG
ATCACGGCGGTGTGCGCGTTTGCATCCTACGCGCTTTGCGTTGGCATGCC
TGGGGCGGGGAAGTCGACGCTCCTCAACACCTACCTCAACCCTAACAACG
ATAGCATCCCAAAGCCGACGGTTGCACTAGAGTACATGTTTGCCAGGCGC
GCAAGTGCACCAAACATGCCGAAGGTAGGCCATGGCGATATTGCACCGGA
GGATCGCGGGGTTTGTTTTGGAGAGTTCGGGCCATGCATGTCGGTCGCAT
CAGCGCCAGCGTAATTCTGTGGAACAATTATCCGTGAGGTTACCACACCC
TTCGAAGCAGCGTGCAGTACTTCTGTGATGTCGTTCGCATTTCCAGGATA
ATTTGGTGTTGTCATACGCAACCCGTCGACATGCCGTTCTCTTGAGGTAA
CTCCTGCTCATCATCATGTTCATCCTCGCACAAAGTTAAGCAAGATATTT
GTCCGGTCCATCGTCCACCTTGCAGGATGTGGCGCACATATGGGAGCTTG
GGGGAGGATCCCACGTCAGCGACCTCGTACGGGTGCCCATCACTCCGGAT
CGCTTCCACGACGCTCTCTACGTCATCGTGGTGGACCTATCCAGGCCGAG
CAGCGTCATCCCACACCTTTTGCAATGGACGGATCAGATCAAGGTGTTGT
TGTCTCCACGCTAAAAACCGTTCCGATCTCCGCTCAGTACCTTCTAATGT
CCGTACTCGTCCAACTGACGCCGACACCTTCCGTGGTCACAAGCTAACTG
CTGGTGAAAGCGAGGAAACGGAAACAATTGCACTTCCGTAATTCATTCTG
CAAGTAAATATTTCTTGTGTCGGAACATATTGCTCAAGTGCAGGCTGCTG
TACATTTGGTTTTGCATGCGGTGGGAGTGTGACCTGAGTTACGAGAAAAC
GGAGCGATGAAAAGCAATTTTCTAAAATCGGTCACACAGCCAGGGCATCT
GCGAAAGCGCGGTGCAGCGAATAAGCTTTCAAGTAAGTCGCAGCAGAGGG
TATTTCGCGTCGGGACCACGGCGCAACAAAAACCGTTCCGAAGGCACCTG
CTCTATCCACAACAACCTCAGGGAAGAACGGCCAGCTGTAACACTGCTGT
GTCGCATACGATTTCTCACGAACACAACCGGCCCACTCTTATGAACTTGG
TAGCTAAGAACTTGGCGGCTAACCCTAACAACAGGTTATCAGTCAAGAAG
TGTACACTAGCACCCATGGTCAAAGAATCCCATACTAAGACCTATTGTCT
TCGCTGCGGGAATGCCCCGTAGACGAAACAAGAAACGATGCACAGAAAAA
ACAAAGAGTTTCTTGAGCGCGGCCCCTTCCTCTACAAACTATTTTTGGCA
CGCTTCATCGTCGCAGGCGTGCGTCAAGGTCTGTGTGCGCGAGCTGGGCA
AGAGAGACCCCACGTTCGCGGAAACCCTCAAGCGAAAGACGTACGCGAAG
CTCGGGCGGGACCACCCTGACTTGCGCGCTGTTCGGCCCTGCCCGGTGCC
GCTGGTGATCGTGGGCAACAAGTACGACGTGTTCAAGGTCCGGGTTGTCG
ATGAATAAGGCGTGCCGAATTTAGGGAGTCTTCATATTGAAGTGCCTCCG
GTTTCTGGTTGCACCGCTGCAGAAGTCTAGTAGGTTCGAAATAAGGAGTG
TGCAACTCGGGCGTGGCTGTGCGACTCGCGTTACCAGCATCTGAGTGCAA
TCTCCGGCGGTCATGTGTGTTTTCTTGAATTCAGACATGCGGCAGGGTTA
GAAAACCAGTAGAAAGATCGACCGGTTGTCCCTCAGGCAGTATTAAGCTG
TTAGTATCCATCAATCAGAACTGCGTTTCCGTCTGACACTTCACTACCTA
CACGCGTGCACGAGGCCGACATGGCACCCGTTTCTCCTTCCCTTCCTCCC
AAGCGATGATCTTCTCGAAGCCATGTCGTTCAACGTCCGTAAAACAGCGA
CCGTGCCTGCGTAAGTTTGACGCTGTTTATTGGCGATGCTTCATGACGTT
CCCCCCTGTAGCAGTCCCACGTAAGAAGGTTTTCTCGAACCAAAGCCCCA
TGTTCTTTTTTGTGTCATTCCGCAGAACCAAGAGAGTGCACGGAAAAGAA
TATTGGCCCAGGCCCTCCGATTCGTGGCCCACATCAACGGCGCGTCGCTG
CTCTTCTGCTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12312:3..2314-

>mRNA_Ecto-sp13_S_contig12312.1940.1 ID=mRNA_Ecto-sp13_S_contig12312.1940.1|Name=mRNA_Ecto-sp13_S_contig12312.1940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12312:3..2314- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGAGGACATCTGGAGCTTGGTATCTCGGCAGCTGCACGCCACCAG
CTCGGCCAGCCCCCGCAAGCAGCAAGCGGAAGAAGTGAAGGATGATGGCG
AAACTGAGGCGCCCGGCGAGGGAGGCGATCCTGCTGACTCGGCGGACAAG
ATCACGGCGGTGTGCGCGTTTGCATCCTACGCGCTTTGCGTTGGCATGCC
TGGGGCGGGGAAGTCGACGCTCCTCAACACCTACCTCAACCCTAACAACG
ATAGCATCCCAAAGCCGACGGTTGCACTAGAGTACATGTTTGCCAGGCGC
GCAAGTGCACCAAACATGCCGAAGGATGTGGCGCACATATGGGAGCTTGG
GGGAGGATCCCACGTCAGCGACCTCGTACGGGTGCCCATCACTCCGGATC
GCTTCCACGACGCTCTCTACGTCATCGTGGTGGACCTATCCAGGCCGAGC
AGCGTCATCCCACACCTTTTGCAATGGACGGATCAGATCAAGGCGTGCGT
CAAGGTCTGTGTGCGCGAGCTGGGCAAGAGAGACCCCACGTTCGCGGAAA
CCCTCAAGCGAAAGACGTACGCGAAGCTCGGGCGGGACCACCCTGACTTG
CGCGCTGTTCGGCCCTGCCCGGTGCCGCTGGTGATCGTGGGCAACAAGTA
CGACGTGTTCAAGAACCAAGAGAGTGCACGGAAAAGAATATTGGCCCAGG
CCCTCCGATTCGTGGCCCACATCAACGGCGCGTCGCTGCTCTTCTGCTCG
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