prot_Ecto-sp13_S_contig12230.1877.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12230.1877.1
Unique Nameprot_Ecto-sp13_S_contig12230.1877.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length330
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12230.1877.1 vs. uniprot
Match: D8LBZ5_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ5_ECTSI)

HSP 1 Score: 524 bits (1349), Expect = 2.550e-176
Identity = 311/367 (84.74%), Postives = 314/367 (85.56%), Query Frame = 0 
Query:    1 MSASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLK-----------------------------ETVPDLDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGATSSRRSSTAVPSFGSPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGXXXXXXXXXXXXXXV--------TANGASTRGRHHRLDLDTTGGGNNGSVLGGATSPGWQQPGPARTAAVDAALVSQAATLRLGGRGGEGATPGRSRSPMTDSLLLRNGGGSSADGSDGLGVGRSGAPARRGVGVGASGEWDAKAGESDDDGIQQLIAEAQPLSAEAVADQTPDEQDVRCVCLHQPVLLRGSQVR 330
            MSASRSRGKRDTSPPRRGTLDLVRELARLRD+EPTRFPAAYLDLK                             ETVPDLDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGA SSRRS TAVPSFGSPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGXXXXXXXXXXXXXX          ANGASTRGRHHRLDLDTTGGGNNGSVLGGATSP WQQPGP RTAAVDAALVS+AATLRLGG GGEG TPGRSRSPMTDS LLRNGGGSS DGSDGLGVGR+GA ARRG GVGASGEWDAKAGESDDD I QLIAEAQPLSAEAVADQTPD QDVRCVCLHQPVLLRGSQ R
Sbjct:    1 MSASRSRGKRDTSPPRRGTLDLVRELARLRDQEPTRFPAAYLDLKLGQGHHTCGTLSTPANANESMKASEEASEETVPDLDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGAASSRRSPTAVPSFGSPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGXXXXXXXXXXXXXXXXXXXXXXXAANGASTRGRHHRLDLDTTGGGNNGSVLGGATSPRWQQPGPGRTAAVDAALVSRAATLRLGGGGGEGETPGRSRSPMTDSFLLRNGGGSSGDGSDGLGVGRNGASARRGGGVGASGEWDAKAGESDDDEIHQLIAEAQPLSAEAVADQTPDVQDVRCVCLHQPVLLRGSQGR 367
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BLAST of mRNA_Ecto-sp13_S_contig12230.1877.1 vs. uniprot
Match: A0A6H5K2G1_9PHAE (Spindle pole body component n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G1_9PHAE)

HSP 1 Score: 484 bits (1245), Expect = 9.930e-164
Identity = 285/333 (85.59%), Postives = 292/333 (87.69%), Query Frame = 0 
Query:    1 MSASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLKETVPDLDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGATSSRRSSTAVPSFGSPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGXXXXXXXXXXXXXXVTANGASTRGRHH---RLDLDTTGGGNNGSVLGGATSPGWQQPGPARTAAVDAALVSQAATLRLGGRGGEGATPGRSRSPMTDSLLLRNGGGSSADGSDGLGVGRSGAPARRGVGVGASGEWDAKAGESDDDGIQQLIAEAQPLSAEAVADQTPDEQDVRCVCLHQPVLLRGSQVR 330
            M+ASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLKETVPDLDHLLKVFAPPARTPSSASP PGSGSSSY+QLRSGA SSRRS TAVPSFGSPLAG MNAAGLGESLLDVSGISGIA DNNDFNYNDSDLFLG XXXXXXXXXXXXXX                RLDLDTT GGNNGSVLGGATSP WQQPGP RTAA DA L+S+AATLR GGRGGEG TPGR  SPMTDS LLRNGGG+S DGSDGLGVGRSG  ARRG  +GASGEWDAKAGES+DD I QLIAEAQPL AEAVADQTPDEQDVRCVCLHQPVLLRGSQ R
Sbjct:    1 MNASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLKETVPDLDHLLKVFAPPARTPSSASPWPGSGSSSYAQLRSGAASSRRSPTAVPSFGSPLAGGMNAAGLGESLLDVSGISGIADDNNDFNYNDSDLFLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLDLDTTSGGNNGSVLGGATSPRWQQPGPGRTAASDAPLISRAATLRPGGRGGEGVTPGRPSSPMTDSFLLRNGGGNSGDGSDGLGVGRSGTSARRGGELGASGEWDAKAGESEDDEIHQLIAEAQPLFAEAVADQTPDEQDVRCVCLHQPVLLRGSQGR 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12230.1877.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBZ5_ECTSI2.550e-17684.74Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
A0A6H5K2G1_9PHAE9.930e-16485.59Spindle pole body component n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12230contigEcto-sp13_S_contig12230:2395..4923 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12230.1877.1mRNA_Ecto-sp13_S_contig12230.1877.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12230 2274..4923 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12230.1877.1 ID=prot_Ecto-sp13_S_contig12230.1877.1|Name=mRNA_Ecto-sp13_S_contig12230.1877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=330bp
MSASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLKETVPD
LDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGATSSRRSSTAVPSFG
SPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGGGDSGGG
GGGYGGGVTANGASTRGRHHRLDLDTTGGGNNGSVLGGATSPGWQQPGPA
RTAAVDAALVSQAATLRLGGRGGEGATPGRSRSPMTDSLLLRNGGGSSAD
GSDGLGVGRSGAPARRGVGVGASGEWDAKAGESDDDGIQQLIAEAQPLSA
EAVADQTPDEQDVRCVCLHQPVLLRGSQVR
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