mRNA_Ecto-sp13_S_contig12230.1877.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12230.1877.1
Unique NamemRNA_Ecto-sp13_S_contig12230.1877.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12230.1877.1 vs. uniprot
Match: D8LBZ5_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ5_ECTSI)

HSP 1 Score: 523 bits (1347), Expect = 2.430e-175
Identity = 311/367 (84.74%), Postives = 314/367 (85.56%), Query Frame = 2 
Query:  122 MSASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLK-----------------------------ETVPDLDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGATSSRRSSTAVPSFGSPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGXXXXXXXXXXXXXXV--------TANGASTRGRHHRLDLDTTGGGNNGSVLGGATSPGWQQPGPARTAAVDAALVSQAATLRLGGRGGEGATPGRSRSPMTDSLLLRNGGGSSADGSDGLGVGRSGAPARRGVGVGASGEWDAKAGESDDDGIQQLIAEAQPLSAEAVADQTPDEQDVRCVCLHQPVLLRGSQVR 1111
            MSASRSRGKRDTSPPRRGTLDLVRELARLRD+EPTRFPAAYLDLK                             ETVPDLDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGA SSRRS TAVPSFGSPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGXXXXXXXXXXXXXX          ANGASTRGRHHRLDLDTTGGGNNGSVLGGATSP WQQPGP RTAAVDAALVS+AATLRLGG GGEG TPGRSRSPMTDS LLRNGGGSS DGSDGLGVGR+GA ARRG GVGASGEWDAKAGESDDD I QLIAEAQPLSAEAVADQTPD QDVRCVCLHQPVLLRGSQ R
Sbjct:    1 MSASRSRGKRDTSPPRRGTLDLVRELARLRDQEPTRFPAAYLDLKLGQGHHTCGTLSTPANANESMKASEEASEETVPDLDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGAASSRRSPTAVPSFGSPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGXXXXXXXXXXXXXXXXXXXXXXXAANGASTRGRHHRLDLDTTGGGNNGSVLGGATSPRWQQPGPGRTAAVDAALVSRAATLRLGGGGGEGETPGRSRSPMTDSFLLRNGGGSSGDGSDGLGVGRNGASARRGGGVGASGEWDAKAGESDDDEIHQLIAEAQPLSAEAVADQTPDVQDVRCVCLHQPVLLRGSQGR 367
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BLAST of mRNA_Ecto-sp13_S_contig12230.1877.1 vs. uniprot
Match: A0A6H5K2G1_9PHAE (Spindle pole body component n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G1_9PHAE)

HSP 1 Score: 483 bits (1243), Expect = 9.330e-163
Identity = 285/333 (85.59%), Postives = 292/333 (87.69%), Query Frame = 2 
Query:  122 MSASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLKETVPDLDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGATSSRRSSTAVPSFGSPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGXXXXXXXXXXXXXXVTANGASTRGRHH---RLDLDTTGGGNNGSVLGGATSPGWQQPGPARTAAVDAALVSQAATLRLGGRGGEGATPGRSRSPMTDSLLLRNGGGSSADGSDGLGVGRSGAPARRGVGVGASGEWDAKAGESDDDGIQQLIAEAQPLSAEAVADQTPDEQDVRCVCLHQPVLLRGSQVR 1111
            M+ASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLKETVPDLDHLLKVFAPPARTPSSASP PGSGSSSY+QLRSGA SSRRS TAVPSFGSPLAG MNAAGLGESLLDVSGISGIA DNNDFNYNDSDLFLG XXXXXXXXXXXXXX                RLDLDTT GGNNGSVLGGATSP WQQPGP RTAA DA L+S+AATLR GGRGGEG TPGR  SPMTDS LLRNGGG+S DGSDGLGVGRSG  ARRG  +GASGEWDAKAGES+DD I QLIAEAQPL AEAVADQTPDEQDVRCVCLHQPVLLRGSQ R
Sbjct:    1 MNASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLKETVPDLDHLLKVFAPPARTPSSASPWPGSGSSSYAQLRSGAASSRRSPTAVPSFGSPLAGGMNAAGLGESLLDVSGISGIADDNNDFNYNDSDLFLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLDLDTTSGGNNGSVLGGATSPRWQQPGPGRTAASDAPLISRAATLRPGGRGGEGVTPGRPSSPMTDSFLLRNGGGNSGDGSDGLGVGRSGTSARRGGELGASGEWDAKAGESEDDEIHQLIAEAQPLFAEAVADQTPDEQDVRCVCLHQPVLLRGSQGR 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12230.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBZ5_ECTSI2.430e-17584.74Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
A0A6H5K2G1_9PHAE9.330e-16385.59Spindle pole body component n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12230contigEcto-sp13_S_contig12230:2274..4923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score529.6
Seed ortholog evalue1e-147
Seed eggNOG ortholog2880.D8LBZ5
Model size1111
KEGG koko:K16569
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005822,GO:0005824,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0031109,GO:0031122,GO:0032153,GO:0032155,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0046785,GO:0048285,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0065003,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0140014,GO:1902850,GO:1903047
Exons3
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2001@1,KOG2001@2759
Ec32 ortholog descriptionSimilar to tubulin, gamma complex associated protein 2
Ec32 orthologEc-20_003870.1
Cds size990
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462650.501974-UTR-Ecto-sp13_S_contig12230:2273..23941681462650.501974-UTR-Ecto-sp13_S_contig12230:2273..2394Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12230 2274..2394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462650.520017-CDS-Ecto-sp13_S_contig12230:2394..25291681462650.520017-CDS-Ecto-sp13_S_contig12230:2394..2529Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12230 2395..2529 +
1681462650.5293033-CDS-Ecto-sp13_S_contig12230:3335..40531681462650.5293033-CDS-Ecto-sp13_S_contig12230:3335..4053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12230 3336..4053 +
1681462650.5393827-CDS-Ecto-sp13_S_contig12230:4786..49231681462650.5393827-CDS-Ecto-sp13_S_contig12230:4786..4923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12230 4787..4923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12230.1877.1prot_Ecto-sp13_S_contig12230.1877.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12230 2395..4923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12230.1877.1

>prot_Ecto-sp13_S_contig12230.1877.1 ID=prot_Ecto-sp13_S_contig12230.1877.1|Name=mRNA_Ecto-sp13_S_contig12230.1877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=330bp
MSASRSRGKRDTSPPRRGTLDLVRELARLRDREPTRFPAAYLDLKETVPD
LDHLLKVFAPPARTPSSASPRPGSGSSSYSQLRSGATSSRRSSTAVPSFG
SPLAGNMNAAGLGESLLDVSGISGIAGDNNDFNYNDSDLFLGGGGDSGGG
GGGYGGGVTANGASTRGRHHRLDLDTTGGGNNGSVLGGATSPGWQQPGPA
RTAAVDAALVSQAATLRLGGRGGEGATPGRSRSPMTDSLLLRNGGGSSAD
GSDGLGVGRSGAPARRGVGVGASGEWDAKAGESDDDGIQQLIAEAQPLSA
EAVADQTPDEQDVRCVCLHQPVLLRGSQVR
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mRNA from alignment at Ecto-sp13_S_contig12230:2274..4923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12230.1877.1 ID=mRNA_Ecto-sp13_S_contig12230.1877.1|Name=mRNA_Ecto-sp13_S_contig12230.1877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12230:2274..4923+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCAGTGCTGCCCAGTGCTGTGTCCCACGCGGTCCTGCGCAGGCCGTGT
GTCCCCACCACACGGGCACTGCTACATCCTAATCGCATCCCCTGAACTAC
TCTCAGGAGTCCACAAGAACAATGAGTGCCTCGCGCAGCAGAGGAAAGCG
AGATACCTCGCCCCCCCGGCGAGGCACCCTTGATCTGGTGAGAGAGCTGG
CGCGGCTTCGGGACCGGGAGCCGACGAGATTCCCGGCAGCTTATCTCGAC
CTCAAGGTGCGCCCCCGGATGTGTGCTGCTGCAAAGAGTGGATGTGAAGA
GTGCGCCTTGTGATCGTATGTCTAATACACTGCTGGTGTGTTGCGGAGAT
CTGATATTTGAAATCTGCAAAACGTCTGGCACAATGTACTGCCGCATCTA
CATACGCCATCCCGTTCCTACTACGATGGCGGCGGCGACCCAGTTGGGGC
AATACCACCACACACATGCAACGTTCTCCACTCCGGCCAACGAATCAGTG
AAAGCAAGCGAAGAAGCCTCAGAGTTTGTAATAAATACGCCATGTAGAGT
TATGTAAGGCTTGCTTCCTGATCGATACTCAGCTTCCTGTTTGCACTTGT
CCAAGGATGAATCCGTTCGTTTGACTGCAGCCAGGAGGTGGGGGTACGTA
CCACGGGGTCAGTTGTGCACTAAAGTTTCCGCTTTCCGCCGCAAGCTAGG
AACTATTAACGTTTCCTCCGCGCATGTTGCTGCACTATGTCATAACTAGG
AACCCGAAAGGTTTGATGGTTTTCTTTCGTTTGGTGTTCAATGAACAGTC
TTCTGCTCCTGTACAACCCGGACCTTTCGCCGTCGTGTCATGCGACTGTT
GACACCTCACGGCATTTCGCTCTTGCTTCACTTGCAGACAGCAACAGGCC
GTCGTGCTTGTGCCGACTCCATAAAGAAGCAAGGGGCTGCACGGTCTGAC
TCCGTCCGCGATTACGAGAATCCCCCACATGTATGTGGTCATGCCCTTTT
GCACCTCTCCTTGATACTCCCTACCGCTTCCCTTCCCCCGCTACACCTCC
GCTTGCACACAGGAAACGGTACCGGACCTCGACCACCTCCTCAAGGTCTT
CGCGCCGCCTGCCCGCACCCCCAGCTCCGCTTCCCCCCGGCCCGGCAGCG
GCTCCTCCTCCTACTCTCAGCTCCGCAGCGGCGCCACCTCCTCCCGCCGC
TCGTCCACCGCAGTCCCGTCCTTCGGCTCCCCTCTTGCAGGAAACATGAA
CGCTGCGGGGCTAGGCGAGTCTCTCCTAGATGTCTCCGGGATCTCGGGCA
TCGCCGGCGACAACAACGACTTCAACTACAACGACTCTGATCTGTTCCTC
GGCGGGGGCGGCGACAGCGGCGGCGGCGGCGGCGGCTACGGAGGAGGCGT
TACCGCCAACGGTGCTAGCACTCGCGGCCGCCACCATCGCCTCGACCTAG
ACACTACCGGCGGTGGCAATAACGGCAGCGTCCTGGGAGGAGCAACATCG
CCAGGATGGCAGCAGCCCGGTCCTGCCCGAACAGCGGCGGTGGATGCAGC
GCTGGTATCCCAAGCGGCGACTCTCCGCCTGGGCGGTCGGGGTGGAGAGG
GTGCGACACCCGGGCGGTCGCGCTCGCCGATGACCGACTCGCTCTTGCTG
CGAAACGGTGGTGGCAGTAGCGCTGATGGTTCTGACGGCCTGGGTGTCGG
CAGAAGCGGGGCCCCGGCGAGGAGGGGGGTGGGGGTGGGCGCGTCGGGCG
AGTGGGATGCGAAAGCGGGCGAGTCTGACGGTGAGGCGAGAACACGAACT
GATTTGGGTGATCGCGATCAAGCGATGTGTGTGGGAAAAGGGCGCCGTCA
ATGGGTTCGATCTAACCCCTAGCAAGTCATCATCATCTACCTAGCGCTGA
GCAAGTAACTTAGTAAGTGGCTTGCTCATAGGTGGGCTGCCGTGCGAGAT
CACCAAGAATAGGAGTAAGGGTCCCGTTTGAAGAGTGGTTTGCCGAGGCC
TCTACCGTTAGGTTTCTCGCAAGATAGGAGGCTTGTTAAGCGCTTACTCC
AGCCTGTCGTTTGGATTGGTGGGGTGGGCATTGCCCCTTTCGTACCGAAG
AGGAGGGCAGGGAGGTCTCGGGTGTATGCCTGCGAACCAGGCAACTTTGT
GAATGGCTCAGTCTTTTATCACTTACGCAACTGCTAAGGGAGGAGCGACC
ATGCTCATGTTCACCGGATACTAACCCCATGAGCTGGGCCATGAGCTCTC
CTAGTGTTGGAGTTTACTTCGCATGAAAGCGTGTGGTGTGACCTCAGTGT
TGTAGCATAGATTGCGCCAATCGGCTTGCCAGAGTCTTTCACGGATAGAA
ATTTGTCAAAACCTTAGCCTTTACTTGTCCGAGGGGACCGGCGGCGAGGA
GAGGTTGGCACACGGAGAGGACCGGACGGAAGGGGTCGAGCCTCCCTACT
TCATGTGTGGATGTGACAAAGTAGTAAGGGTTGTGAGTAATGTGCGTTTT
GTGTGTCACACAGATGACGGGATCCAGCAGCTCATCGCGGAGGCCCAGCC
CCTGTCTGCGGAGGCTGTCGCCGACCAGACGCCGGACGAGCAAGACGTGC
GCTGCGTGTGCCTGCACCAACCGGTCCTTCTGCGCGGCAGCCAGGTGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12230:2274..4923+

>mRNA_Ecto-sp13_S_contig12230.1877.1 ID=mRNA_Ecto-sp13_S_contig12230.1877.1|Name=mRNA_Ecto-sp13_S_contig12230.1877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12230:2274..4923+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGCCTCGCGCAGCAGAGGAAAGCGAGATACCTCGCCCCCCCGGCG
AGGCACCCTTGATCTGGTGAGAGAGCTGGCGCGGCTTCGGGACCGGGAGC
CGACGAGATTCCCGGCAGCTTATCTCGACCTCAAGGAAACGGTACCGGAC
CTCGACCACCTCCTCAAGGTCTTCGCGCCGCCTGCCCGCACCCCCAGCTC
CGCTTCCCCCCGGCCCGGCAGCGGCTCCTCCTCCTACTCTCAGCTCCGCA
GCGGCGCCACCTCCTCCCGCCGCTCGTCCACCGCAGTCCCGTCCTTCGGC
TCCCCTCTTGCAGGAAACATGAACGCTGCGGGGCTAGGCGAGTCTCTCCT
AGATGTCTCCGGGATCTCGGGCATCGCCGGCGACAACAACGACTTCAACT
ACAACGACTCTGATCTGTTCCTCGGCGGGGGCGGCGACAGCGGCGGCGGC
GGCGGCGGCTACGGAGGAGGCGTTACCGCCAACGGTGCTAGCACTCGCGG
CCGCCACCATCGCCTCGACCTAGACACTACCGGCGGTGGCAATAACGGCA
GCGTCCTGGGAGGAGCAACATCGCCAGGATGGCAGCAGCCCGGTCCTGCC
CGAACAGCGGCGGTGGATGCAGCGCTGGTATCCCAAGCGGCGACTCTCCG
CCTGGGCGGTCGGGGTGGAGAGGGTGCGACACCCGGGCGGTCGCGCTCGC
CGATGACCGACTCGCTCTTGCTGCGAAACGGTGGTGGCAGTAGCGCTGAT
GGTTCTGACGGCCTGGGTGTCGGCAGAAGCGGGGCCCCGGCGAGGAGGGG
GGTGGGGGTGGGCGCGTCGGGCGAGTGGGATGCGAAAGCGGGCGAGTCTG
ACGATGACGGGATCCAGCAGCTCATCGCGGAGGCCCAGCCCCTGTCTGCG
GAGGCTGTCGCCGACCAGACGCCGGACGAGCAAGACGTGCGCTGCGTGTG
CCTGCACCAACCGGTCCTTCTGCGCGGCAGCCAGGTGCGG
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