mRNA_Ecto-sp13_S_contig12002.1720.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: D8LRU3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU3_ECTSI) HSP 1 Score: 622 bits (1604), Expect = 2.630e-220 Identity = 308/342 (90.06%), Postives = 318/342 (92.98%), Query Frame = 1
Query: 1 VVCKPSVTVESELVDTAQKAVIALDVGSAATLNTQQQSKVGTPASVISTGAVAHQPVGGIGDRSSRGETWVCKTIAASSSTQQPSPRGGCSWTKIGSKFVLFGGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPPRNAHTAVLDGETMIVIAGASPEEQTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLCDLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG*VTTV 1026
VVC+PSVTVESE AVIALD+ SAATL+TQQQSKVG PASV STGAVAH PVGGIGDRSSRGETWVCKTIAASSSTQQPSPRGGCSWTK+GSKFVLFGGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALG+SLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWV LPCVDIPPRNAHTAVLDGETMIVIAGASPE QTDDVFTIDLS+R+NLACRRVFC+P ESGTGE CSEG+GGVPAAREMHSTCAYNS+GTTGER TTILLMGGRSAGGVL DLFALRTDTWTWKRLKDAPVARCAHSACFVQ AG MAIYGGWDG T
Sbjct: 26 VVCEPSVTVESE------PAVIALDIRSAATLDTQQQSKVGKPASVTSTGAVAHPPVGGIGDRSSRGETWVCKTIAASSSTQQPSPRGGCSWTKVGSKFVLFGGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALGESLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVPLPCVDIPPRNAHTAVLDGETMIVIAGASPEGQTDDVFTIDLSNRANLACRRVFCQPFESGTGERRCSEGVGGVPAAREMHSTCAYNSEGTTGERATTILLMGGRSAGGVLRDLFALRTDTWTWKRLKDAPVARCAHSACFVQAAGIMAIYGGWDGGTTVA 361
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A7S2AZD4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZD4_9STRA) HSP 1 Score: 142 bits (359), Expect = 5.430e-34 Identity = 100/289 (34.60%), Postives = 139/289 (48.10%), Query Frame = 1
Query: 181 GDRSSRGETWVCKTIAASSSTQQPSPRGGCSWTKIGSKFVLFGGADERQQHFSDIHCFDAAIGKWEKTPVS---GAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPP--RNAHTAVLDGET-MIVIAGASPEEQTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERET----TILLMGGR-SAGGVLCDLFALRTDTWTWKRLKDA-PVARCAHSACFVQTAGTMAIYGGWDG 1011
G+ S+ G W C+ SS PS RGGC+ T +GS + GGAD H +D+H D +W + V+ A PSPR+GHS VA G LV++GG N +ND+F L E + W P RN+H+A + T M+V GAS +DV +DL+D S + V C+ G P AREMHS + + +IL++GGR +G VL D ++L TW W + A P RCAH A V + + ++GG DG
Sbjct: 101 GEVSADGGAWTCECRV--SSANFPS-RGGCTATMVGSSMFVVGGADRAGNHMNDVHVLDTTSWEWRQATVAQDAAAAPSPRSGHSTVACGSHLVLFGGANMSVEACYNDVFLLATDGDE-LTWSQADPSGPKPTARNSHSATMVSPTAMVVFGGASEMGPLNDVHVLDLADLSAPVWQAVQCQ---------------GLAPTAREMHSATLWPTVDAMAAESVAQAPSILVLGGRVESGEVLADAWSLNPGTWAWTKSDHALPTPRCAHVATVVNSQ--VVLFGGIDG 368
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: W4HAK8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAK8_9STRA) HSP 1 Score: 134 bits (336), Expect = 5.110e-31 Identity = 96/267 (35.96%), Postives = 140/267 (52.43%), Query Frame = 1
Query: 250 PSPRGGCSWTKI-----GSKFVLFGGADERQQHFSDIHCFDAAIGKWE--KTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCV--DIPP-RNAHTAVLDGETMIVIAGASPEEQT-DDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLCD-LFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAI-YGGWDG 1011
PS RGG + T + + L GGA+ + F D+H FD +W K + +PR+GH+AVA G + V+GG N + G FNDL L T+ M W S P V D+PP RN+H AV + M+VI G+SP+ +DV+ + D +++ RR+ +PS S V + RE+H+ CA + + IL++GGRS+ G+LCD + L TD+WTW RCAH+A + GT + +GGW G
Sbjct: 44 PSKRGGATLTAVLAAQGNTLLYLIGGANRAAETFGDVHVFDWDAKRWTQAKPSIGSTTFTPRSGHTAVARGSRIYVFGGANLRVGAVFNDLHVL---DTDTMTW-SQPEVGGDVPPARNSHVAVATDKGMVVIGGSSPQVGAMNDVYLLAWDD--DMSWRRI--RPSSST------------VMSKRELHAACAIHDR---------ILVVGGRSSSGILCDDVCELHTDSWTWTITPLTSWHRCAHAAGVL--GGTHWVHFGGWGG 279
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A024UU46_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UU46_9STRA) HSP 1 Score: 127 bits (320), Expect = 8.640e-29 Identity = 96/270 (35.56%), Postives = 136/270 (50.37%), Query Frame = 1
Query: 244 QQPSPRGGCSWTKIGSK-----FVLFGGADERQQHFSDIHCFDAAIGKWE--KTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCV--DIPP-RNAHTAVLDGETMIVIAGASPEEQT-DDVFTID--LSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
Q P+ RGG + T + S L GGA+ + F D+H D +W K + AP PR+GH+AVA G + V+GG N + FNDL L T M+W+ P V D+PP RN+H AV M+VI G+SP+ +DV+ + SD L RR++ P+ + + + RE+HS C G+R IL++GGRS+ G LC DL L TD+WTW RCAH++ V + +GGW+G
Sbjct: 43 QLPAKRGGATLTAVTSAQGKTLLYLIGGANRAAEAFGDVHVLDWETMRWNQAKPLLESAPFIPRSGHTAVAWGSRIFVFGGANLRIDTVFNDLHVL---DTVQMKWLR-PIVGGDVPPPRNSHVAVATAHGMVVIGGSSPQVGAMNDVYLLPWPASDGDALRWRRIY--PTST-------------LMSKRELHSACV------DGDR---ILVVGGRSSSGQLCSDLCVLNTDSWTWTITPLPAWQRCAHASGVVGRTRWLH-FGGWEG 283
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A6G0XP48_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP48_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.720e-28 Identity = 87/280 (31.07%), Postives = 132/280 (47.14%), Query Frame = 1
Query: 202 ETWVCKTIAASSSTQQPSPRGGCSWTKIGSK----FVLFGGADERQQHFSDIHCFDAAIGKW-EKTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVD---IPPRNAHTAVLDGETMIVIAGASP-EEQTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLCD-LFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
+T+ A+ + P+ RGG + T + S+ L GGA+ + F+D+H FD +W + +P + PR+GH+++A+G + V+GG N ++G +NDL L T+ MEW S PC D PPR++H AV + M++ G+SP +D F L+ + + P + A RE+HS C N+ + + GGR G LCD L L T+TWTW RCAH + V +GGWDG
Sbjct: 28 KTYTLSACPATYDSNLPAKRGGATLTPVTSEGKTLLYLIGGANRAAEAFNDVHVFDYDKKRWTQASPQDNSAFEPRSGHTSIAIGACIYVFGGANLREGKVYNDLHILN---TDTMEWTS-PCADGDIPPPRSSHIAVALPQGMLIFGGSSPLVGGMNDTFL--LTSKDGHFTWKSIASPEAA-------------TLAKRELHSACVLNN---------LVYICGGRLESGELCDELSILDTETWTWTIESMPAWRRCAHVSGVVHNQWLH--FGGWDG 277
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A6A3HB55_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HB55_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.020e-26 Identity = 86/285 (30.18%), Postives = 137/285 (48.07%), Query Frame = 1
Query: 208 WVCKTIAASSSTQQPSPRGGCSWTKIGSKFVLF--GGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDL--FELRPGSTEGMEWVSLPCV-DIP-PRNAHTAV--------LDGETMIVIAGASPE-EQTDDVFTIDLSDRS-NLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
+ +++A S +P+ RGG + T++G +++ GGA+ F D+HCFD W+ S SPR+GHSAVA+G + V+GG++ G ++ND+ F+ R S W + P PRNAH A+ L+ M+V G+SP+ +D++F + + + A R P G VP ARE+HS + E+ I GGR+ G +C D+ L +WTW+ + RC+ +A + G + +GGWDG
Sbjct: 11 YAVESVAMDESALKPAKRGGATLTQVGEGGLVYLIGGANREGASFGDVHCFDFETRAWKLVSPSSGSLSPRSGHSAVAVGAKIYVFGGLDVAAGASYNDVNVFDTRTSS-----WCEAAVEGEAPRPRNAHAAIVLPEEDDSLETRRMLVHGGSSPKFGASDELFLLHVPVHDVDTALRWEKLSPD-------------GEVPEARELHSALLQS--------ESAICFAGGRNFDGKICTDMATLDIKSWTWQLVPICEWNRCSLAAGVID--GELVSFGGWDG 267
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A6G0NCE7_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NCE7_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.390e-26 Identity = 95/343 (27.70%), Postives = 153/343 (44.61%), Query Frame = 1
Query: 208 WVCKTIAASSSTQQPSPRGGCSWTKIGSKFVLF--GGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEW--VSLPCVDIPPRNAHTAVL--------DGETMIVIAGASPEE-QTDDVFTIDLSDRS-NLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWD-G*VTTVRSHRLDADRPHSR*VL--------WEPQLVEIGTK*RKCTRMKRSFTVDPTLHP 1164
+ +++A S +P+ RGG + T++G +++ GGA+ F D+HCFD W+ S SPR+GHSAVA+G + V+GG + G TFND+ T + W ++ + PRNAH A++ + M+V G+S E +D++F + + + A R P T VP ARE+HS + E+ I +GGR+ G +C D+ L +WTW+ + RC+ +A + G + +GGWD G + H D + L EP + E+ + C + TV P+ P
Sbjct: 58 YAAESVAMDDSALKPAKRGGATLTQVGEGGLIYLIGGANREGASFGDVHCFDFETRAWKFVIPSSGSLSPRSGHSAVAIGSKIYVFGGFDVAAGATFNDV---NVFDTRTLSWYEAAVEGEEPRPRNAHAAIILPEDDDSRETRRMLVHGGSSLEVGASDELFLLHVPVHDVDTALRWEKLSPDGERTS----------VPEARELHSALLQS--------ESAICFVGGRNFDGKICTDMATLDIKSWTWQLMPICEWNRCSLAAGVID--GALVSFGGWDVGRICGDCCHYSDEEESWIHATLAECKTGNQTEPAMPEVPERFGHCGT---TITVQPSNQP 374
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: T0RGB5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RGB5_SAPDV) HSP 1 Score: 118 bits (296), Expect = 7.360e-26 Identity = 94/286 (32.87%), Postives = 138/286 (48.25%), Query Frame = 1
Query: 184 DRSSRGETWVCKTIAASSSTQQPSPRGGCSWTKI---GSKFV-LFGGADERQQHFSDIHCFDAAIGKWEKTPVSGAPP-SPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCV--DIP-PRNAHTAVLDGETMIVIAGASPEE-QTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
D +++ T K + ++S P+ RGG + + + G K + L GGA+ + F+D+H ++ G W + V+ + R+GHSAV LG + V+GG+N TFND+ L T W S P V D P PRNAHTAV+ M+VI G+SP + DVF + + + + L R+ C G V A RE+H+ ++K RE I + GGR G LC ++ L +WTW RC H + T + YGGWDG
Sbjct: 20 DDAAKEATASYKRVDCAASGDVPAKRGGATLSLVEAHGEKLLYLIGGANREARMFNDVHVYNVGTGSWSQVHVANSAAFQARSGHSAVVLGTRIFVFGGLNLPLQTTFNDVHIL---DTATKSW-SAPIVLNDPPRPRNAHTAVVTTNGMVVIGGSSPTDGPMSDVFLLTVHEPT-LRWIRIDCN---------------GPVMAPRELHAAVRLSTK-----RER-IYVSGGRLENGQLCCEVATLDVASWTWHVQSSGGFRRCGHVIGLLDTG--IVQYGGWDG 277
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A329RY93_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RY93_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.120e-25 Identity = 89/279 (31.90%), Postives = 132/279 (47.31%), Query Frame = 1
Query: 220 TIAASSSTQQPSPRGGCSWTKIGSKFVLF--GGADERQQHFSDIHCFDAAIGKWEKT-PVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCV-DIP-PRNAHTAVLDGET--------MIVIAGASPEEQT-DDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
++ ST +P+ RGG + T+I V++ GGA+ F DIH FD +W P SG+ P PR+GHSAVA+G + V+GG++ +ND+ T+ W + P PRNAH A+ +T M+V G+SPE +D++ + + N R C P G +P ARE+H CA + ETT+ GGR+ G +C D+ L WTW+ + RC+ +A V G + +GGWDG
Sbjct: 23 SVDGGKSTLKPAARGGATLTQIEETGVVYLIGGANREGTSFGDIHRFDLDTSRWTLIKPSSGSFP-PRSGHSAVAIGAKIYVFGGLDAASSGIYNDVHIF---DTQTSSWTKAAIKGETPLPRNAHAAIALPQTDNSMGSRKMLVYGGSSPEYGAFNDLYLLHIPAGDNQPLRWEKCTPE-------------GEIPEARELH--CALL------QSETTVCFAGGRNFDGKVCTDMALLDFSNWTWQLMPICEWNRCSLAAGAVD--GELIAFGGWDG 274
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A485LBL5_9STRA (Aste57867_18946 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBL5_9STRA) HSP 1 Score: 117 bits (292), Expect = 3.340e-25 Identity = 90/264 (34.09%), Postives = 129/264 (48.86%), Query Frame = 1
Query: 250 PSPRGGCSWTKIGS----KFVLFGGADERQQHFSDIHCFDAAIGKWEK-TPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPP--RNAHTAVLDGETMIVIAGASPEEQT-DDVFTIDLSDRSN-LACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
P RGG + T I + + L GGA+ F+D+H F+ KW + +P + + +PR+GHSAVA G + V+GG+N Q G +NDL L T MEW P RN+H AV M+V+ G+SP T +D F + S + L + + C P + +P RE+H+ CA S+G + + GGR G LC +L + TDTWTW R + RCAH++ + YGGWDG
Sbjct: 44 PPKRGGAALTSITTQGKTRIYLIGGANRDADAFNDVHIFNLEEKKWTRVSPRNSSAFTPRSGHSAVAHGSFIYVFGGVNMQLGEVYNDLHVL---DTVTMEWTQPNARGAAPSPRNSHAAVATTRGMLVLGGSSPHVGTMNDAFLLPWSGSDDELEWQSIAC-PHD--------------LPK-RELHAACA--SRGL-------VYVCGGRLETGQLCGELSIVDTDTWTWTRSQLPMWHRCAHASGIL--GSQWVHYGGWDG 277 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12002.1720.1 >prot_Ecto-sp13_S_contig12002.1720.1 ID=prot_Ecto-sp13_S_contig12002.1720.1|Name=mRNA_Ecto-sp13_S_contig12002.1720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp MNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPPRNAHTAVLDGETMIVback to top mRNA from alignment at Ecto-sp13_S_contig12002:3..5059+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12002.1720.1 ID=mRNA_Ecto-sp13_S_contig12002.1720.1|Name=mRNA_Ecto-sp13_S_contig12002.1720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5057bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12002:3..5059+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12002:3..5059+ >mRNA_Ecto-sp13_S_contig12002.1720.1 ID=mRNA_Ecto-sp13_S_contig12002.1720.1|Name=mRNA_Ecto-sp13_S_contig12002.1720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12002:3..5059+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |