prot_Ecto-sp13_S_contig1199.1698.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1199.1698.1
Unique Nameprot_Ecto-sp13_S_contig1199.1698.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length335
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1199.1698.1 vs. uniprot
Match: A0A6H5KSY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY7_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.560e-45
Identity = 92/112 (82.14%), Postives = 95/112 (84.82%), Query Frame = 0 
Query:    1 VPAIVGDNTALTNLNLSGNNLKGLPDTINSLSALTHLDLSDNKIETHSILPVGRKQKGPRLVSLEVLRLDRNRLTEGPEMVETFKTLTELDVSNNPIKNWSLDVSNLCKMKH 112
            VPAIVGDNTALTNLNLSGN+LK LPDTINSL             +THSILPVGRKQKGPRLVSLEVLRLD NRLTEGP+MVET KTLTELDVSNNPIKNWSLDVSNL KMKH
Sbjct:    6 VPAIVGDNTALTNLNLSGNSLKDLPDTINSLXXXXXXXXXXXXXKTHSILPVGRKQKGPRLVSLEVLRLDGNRLTEGPDMVETLKTLTELDVSNNPIKNWSLDVSNLRKMKH 117
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BLAST of mRNA_Ecto-sp13_S_contig1199.1698.1 vs. uniprot
Match: D8LE76_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE76_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 7.770e-29
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 
Query:   45 ETHSILPVGRKQKGPRLVSLEVLRLDRNRLTEGPEMVETFKTLTELDVSNNPIKNWSLDVSNLCKMKH 112
            +THSILPVGRKQKGPRLVSLEVLRLD NRLTE P+MVETFKTLTELDVSNNPIKNWSLDVSNL KMKH
Sbjct:  534 KTHSILPVGRKQKGPRLVSLEVLRLDGNRLTERPDMVETFKTLTELDVSNNPIKNWSLDVSNLRKMKH 601
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1199.1698.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSY7_9PHAE1.560e-4582.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE76_ECTSI7.770e-2992.65Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 11..24
score: 51.27
coord: 31..44
score: 48.23
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 84..104
e-value: 72.0
score: 8.6
coord: 245..267
e-value: 530.0
score: 1.5
coord: 31..52
e-value: 47.0
score: 10.1
coord: 130..148
e-value: 97.0
score: 7.5
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 8..27
e-value: 22.0
score: 11.1
coord: 178..196
e-value: 610.0
score: 0.1
coord: 245..264
e-value: 12.0
score: 13.1
coord: 61..80
e-value: 43.0
score: 8.9
NoneNo IPR availablePANTHERPTHR16083:SF20LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40coord: 9..142
NoneNo IPR availablePANTHERPTHR16083:SF20LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40coord: 121..292
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 9..142
coord: 121..292
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 3..315
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 245..268
e-value: 0.21
score: 20.7
coord: 9..30
e-value: 150.0
score: 3.7
coord: 153..175
e-value: 87.0
score: 5.6
coord: 176..199
e-value: 10.0
score: 13.2
coord: 31..55
e-value: 61.0
score: 6.8
coord: 61..84
e-value: 18.0
score: 11.2
coord: 222..244
e-value: 13.0
score: 12.3
coord: 130..152
e-value: 50.0
score: 7.6
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 8..44
e-value: 8.0E-7
score: 28.7
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 86..98
e-value: 1.1
score: 9.5
coord: 155..170
e-value: 0.85
score: 9.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 33..54
score: 6.434
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 224..245
score: 5.24
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 155..176
score: 6.518
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 132..153
score: 6.626
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 178..200
score: 6.033
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 10..31
score: 7.45
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 86..108
score: 6.803
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 247..269
score: 7.027
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 63..84
score: 5.664
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 201..222
score: 5.617
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..323
e-value: 2.5E-69
score: 235.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1199contigEcto-sp13_S_contig1199:15386..18488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1199.1698.1mRNA_Ecto-sp13_S_contig1199.1698.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1199 15386..18488 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1199.1698.1 ID=prot_Ecto-sp13_S_contig1199.1698.1|Name=mRNA_Ecto-sp13_S_contig1199.1698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=335bp
VPAIVGDNTALTNLNLSGNNLKGLPDTINSLSALTHLDLSDNKIETHSIL
PVGRKQKGPRLVSLEVLRLDRNRLTEGPEMVETFKTLTELDVSNNPIKNW
SLDVSNLCKMKHLRLRGVDLDRCPEGIGHLNKLESLDFSENRIDTLDQSM
AALFKLKKLGLRGNNIRDLGSCVGSMISLTSLDAGGNNLELISPELSRCT
ALETLDVSGGTISQLPGGLSMLTRLRVLRAQDNGLRAIPPDFKTLTALEE
LRLGGNQLSSLPASLHTLTKMRYAELSRNSMESPPPVTRQWPLLKHLVLS
RNPLRGRHRQSLRLLQAAQRGHDAMHRGVRGKPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf