mRNA_Ecto-sp13_S_contig1199.1698.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1199.1698.1
Unique NamemRNA_Ecto-sp13_S_contig1199.1698.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1199.1698.1 vs. uniprot
Match: A0A6H5KSY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY7_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.560e-45
Identity = 92/112 (82.14%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    1 VPAIVGDNTALTNLNLSGNNLKGLPDTINSLSALTHLDLSDNKIETHSILPVGRKQKGPRLVSLEVLRLDRNRLTEGPEMVETFKTLTELDVSNNPIKNWSLDVSNLCKMKH 336
            VPAIVGDNTALTNLNLSGN+LK LPDTINSL             +THSILPVGRKQKGPRLVSLEVLRLD NRLTEGP+MVET KTLTELDVSNNPIKNWSLDVSNL KMKH
Sbjct:    6 VPAIVGDNTALTNLNLSGNSLKDLPDTINSLXXXXXXXXXXXXXKTHSILPVGRKQKGPRLVSLEVLRLDGNRLTEGPDMVETLKTLTELDVSNNPIKNWSLDVSNLRKMKH 117
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BLAST of mRNA_Ecto-sp13_S_contig1199.1698.1 vs. uniprot
Match: D8LE76_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE76_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 7.770e-29
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:  133 ETHSILPVGRKQKGPRLVSLEVLRLDRNRLTEGPEMVETFKTLTELDVSNNPIKNWSLDVSNLCKMKH 336
            +THSILPVGRKQKGPRLVSLEVLRLD NRLTE P+MVETFKTLTELDVSNNPIKNWSLDVSNL KMKH
Sbjct:  534 KTHSILPVGRKQKGPRLVSLEVLRLDGNRLTERPDMVETFKTLTELDVSNNPIKNWSLDVSNLRKMKH 601
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1199.1698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSY7_9PHAE1.560e-4582.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE76_ECTSI7.770e-2992.65Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1199contigEcto-sp13_S_contig1199:15386..18488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score128.3
Seed ortholog evalue6.9e-27
Seed eggNOG ortholog2880.D8LE76
Model size1005
KEGG koko:K19613
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size1005
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.7126644-CDS-Ecto-sp13_S_contig1199:15385..156571681462635.7126644-CDS-Ecto-sp13_S_contig1199:15385..15657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 15386..15657 +
1681462635.7219536-CDS-Ecto-sp13_S_contig1199:16373..166021681462635.7219536-CDS-Ecto-sp13_S_contig1199:16373..16602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 16374..16602 +
1681462635.729514-CDS-Ecto-sp13_S_contig1199:17086..172621681462635.729514-CDS-Ecto-sp13_S_contig1199:17086..17262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 17087..17262 +
1681462635.7382128-CDS-Ecto-sp13_S_contig1199:17981..181141681462635.7382128-CDS-Ecto-sp13_S_contig1199:17981..18114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 17982..18114 +
1681462635.747287-CDS-Ecto-sp13_S_contig1199:18293..184881681462635.747287-CDS-Ecto-sp13_S_contig1199:18293..18488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1199 18294..18488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1199.1698.1prot_Ecto-sp13_S_contig1199.1698.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1199 15386..18488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1199.1698.1

>prot_Ecto-sp13_S_contig1199.1698.1 ID=prot_Ecto-sp13_S_contig1199.1698.1|Name=mRNA_Ecto-sp13_S_contig1199.1698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=335bp
VPAIVGDNTALTNLNLSGNNLKGLPDTINSLSALTHLDLSDNKIETHSIL
PVGRKQKGPRLVSLEVLRLDRNRLTEGPEMVETFKTLTELDVSNNPIKNW
SLDVSNLCKMKHLRLRGVDLDRCPEGIGHLNKLESLDFSENRIDTLDQSM
AALFKLKKLGLRGNNIRDLGSCVGSMISLTSLDAGGNNLELISPELSRCT
ALETLDVSGGTISQLPGGLSMLTRLRVLRAQDNGLRAIPPDFKTLTALEE
LRLGGNQLSSLPASLHTLTKMRYAELSRNSMESPPPVTRQWPLLKHLVLS
RNPLRGRHRQSLRLLQAAQRGHDAMHRGVRGKPA*
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mRNA from alignment at Ecto-sp13_S_contig1199:15386..18488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1199.1698.1 ID=mRNA_Ecto-sp13_S_contig1199.1698.1|Name=mRNA_Ecto-sp13_S_contig1199.1698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3103bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1199:15386..18488+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACCCGCCATCGTTGGGGACAACACGGCCCTTACGAACCTCAACCTTAG
CGGCAACAACCTCAAAGGCCTTCCAGATACCATCAATTCCCTGTCGGCTT
TGACCCACCTCGACCTATCCGACAACAAGATCGAAACCCACTCCATCCTT
CCCGTGGGAAGGAAACAAAAGGGGCCGCGCCTAGTATCCTTGGAGGTGTT
GCGATTGGACCGTAACCGTCTCACGGAGGGGCCGGAAATGGTTGAAACAT
TCAAGACGCTCACAGAACTAGAGTAAGTGCTACCTGGTCTGTCAACACGA
ATAACAATCTCCCAGTTCGTTTGGAGATAATAGTGCTTTGTCCCTTTTTG
CTCTTGGTGCGTTGAGAATTTCCGCGGCGAGCAGCGAAAAGAATTCAAGG
CTATCTTTGATCTGGTGTTGTCCTTTTCGTGACACCTTAACCTCTTCCTC
TCCACGAGCAACTCTAAGCACACGCGGTTGTCTCGACTTTCAGTTTCTGT
GTTTGTACTGGAGTCGGAAGCGGATTGACGGGGGTCAAGCGAGGACGGAA
ATGAAACGCAGGGACTTGATGTTTCGATCGAAAAGTTTTCTGTTGATATG
GGTCCTTAGAACGCACCGAGGGAGCCGCTGTTGGCTTCAACAAAACGATC
GTCCTTGTCCTACTTGTTTCATTAGGCCGTTATCATCTTCTTGGTGCCGA
CCGTACAAAGATCGACGCTCAGTGATATGTACCCAATATCATTCGTCCGC
CGTGCAACATCTTGTGATGGTACGTGCCATTTTACGACACACGTTTTTTT
GGGGGGAAGTACTTGAAATTTAGTACGCAGCAATCCAAACACCACGCAAC
AATATCAACCGAAACGACACGACAACGACAACAAGGTGATTCCGGGCTAA
GCTCGCTCTCATCATTTGATACCCTCCACTCACCCACTGCCGCCCCCCAA
TATCAATCCTGCCCCCGCCTGTCCGTTCATCCGCAAAGTGTGTCCAACAA
TCCCATCAAAAACTGGAGCCTCGATGTGTCCAACCTCTGCAAGATGAAAC
ACCTGCGACTGAGGGGCGTTGATCTGGATCGATGCCCAGAAGGAATAGGG
CACCTGAACAAGCTGGAAAGTCTCGACTTCTCCGAAAACCGCATCGATAC
TCTCGATCAGTCAATGGCCGCTTTGTTCAAGCTTAAAAAGCTGGGCCTCA
GGGGCAACAACATCCGGGTAATACCAGCTTCCGTACGTGTCAACTTTTCC
ACCACATGGTAGTAACTATGCCGATAGGAGCAAGTTTCGTCATCGTCCCT
GCTAGGAGAGTATAGGCGGCATTACAACACAATTTTTCATCGTCGAGGAC
AGTTCGAGGATGGTGGGCAACACCCTTTGTTCTGCTGTGCCTGCTCTGAA
GTTCCTTCCATCCTTGCCCCCACCCCTCCCGCACCAGGCTTGTTTCTTTG
AGCGAATTTGGCTAGGTACCGAATAGATTGAAATCTCCCGAACTCATAGA
GCACGCAACGTTGAGAGCAAATCGCTCTAGTGTTCAAACGTTGGGATTCT
GCCTTCCGGAACTCCGTTGCCTCCTGCCAGGCGAACACACACAAACACTT
CGTCCACGCCATATCTGACATGTTCATTTCAACATCAATATCGACGTCGA
TATTTGTATCCAACGACCCTTTCAATCTGAAATCCACCACTCGCGCGAAA
GGATCTAGGGTCTTGCGTCGGTAGCATGATCTCCCTGACGTCTCTCGACG
CGGGTGGGAACAATCTGGAGCTGATTTCTCCCGAGCTGTCTCGCTGCACG
GCGCTTGAGACCCTTGACGTGAGCGGTGGGACGATAAGCCAACTGCCGGG
CGGGCTATCTATGCTCACCAGGCTCAGGTAAGGATCCTCCAACTCCGACG
TGGAACCAAGGTTCTTGGTAAGCAGCAAAAACTCGAACGCTTCTCCCTCC
CTCCAAAACATGGCAAGACCCAAAGTAATCTCACCGACCCCTTTTTGAAT
GAGGGCGCCTGAAGCTTCATCTCCATCGAAAGCTCCCTACCCCCAGAGTT
TCTTGAAATATTTTCTTATCCCGTTTGTGGCGGGCGCCAGCCTACACCTT
TCGGGTTAATTTGGAAGGTCACACAGGAGGATCTCTCCACCGCTTCTCGT
GCGGTGCTTGCCTTCAAAAATGACGTGAGGAGCCCCTAGTAGACCCTCCC
GTAATTGTGTTGTGTACGAGGTTTTCCCAACCCATGGTCGAAGGTTTTTC
GAGATTACCAACTGAACCGGCCACCTACTTCGTGATCACAATGCACACAG
GGAAAAACATATGTACTCTCGTAAGAATACCAGGTTGCAAAGAAAATGAG
GTGTAATTAGGAGCAAGAACTACCTACCCGATTTGTTTGAAAACTCTTGC
TGCAGTCAATGTCAGGACGATATTAGGTGTCGATGTTCTTCCTCAACCAC
GCATTGCCTGTGTCAAATATCCCGAAAATATTTTTTCGAATATCACGCTG
GGTGGCCACATAATCCATTCATTTTCCCCGCACCAGCCATTCGCCTATCC
CATTGCATGGTGAAACTTGCCTTTTTTGCGCCCTCCTCCTCCTCAGGGTT
CTCCGAGCCCAAGATAACGGGCTTAGGGCAATACCCCCCGACTTCAAAAC
GCTGACAGCGCTCGAGGAGCTTCGCCTGGGCGGAAACCAGCTCAGCAGCC
TTCCGGCCTCCCTGCACACCCTTACGAAGGTAATCCCATAATCTCAGGTG
GTTGCCAATAGCTCAAAGGGTAAAATGAAGCAGGGGAATAGGAGGTATCC
TAAGAGACAAATGAGTTTCAAGGGGCAGATGAGAAGAAAAGAACGCCAAC
AGCAGCATGAGCAATCTCGCAGAATTTAACACACCCGATGTTGTTGTACG
AACGCCAGATGCGATACGCGGAGCTTTCTCGAAACTCCATGGAGTCTCCG
CCGCCGGTGACGCGGCAGTGGCCCCTGCTGAAGCATCTTGTTCTCTCCAG
AAACCCTTTGCGGGGTAGACATCGACAATCCCTCCGCTTGCTCCAGGCTG
CTCAGCGGGGACACGACGCCATGCACAGAGGGGTAAGGGGCAAGCCCGCA
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1199:15386..18488+

>mRNA_Ecto-sp13_S_contig1199.1698.1 ID=mRNA_Ecto-sp13_S_contig1199.1698.1|Name=mRNA_Ecto-sp13_S_contig1199.1698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1005bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1199:15386..18488+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACCCGCCATCGTTGGGGACAACACGGCCCTTACGAACCTCAACCTTAG
CGGCAACAACCTCAAAGGCCTTCCAGATACCATCAATTCCCTGTCGGCTT
TGACCCACCTCGACCTATCCGACAACAAGATCGAAACCCACTCCATCCTT
CCCGTGGGAAGGAAACAAAAGGGGCCGCGCCTAGTATCCTTGGAGGTGTT
GCGATTGGACCGTAACCGTCTCACGGAGGGGCCGGAAATGGTTGAAACAT
TCAAGACGCTCACAGAACTAGATGTGTCCAACAATCCCATCAAAAACTGG
AGCCTCGATGTGTCCAACCTCTGCAAGATGAAACACCTGCGACTGAGGGG
CGTTGATCTGGATCGATGCCCAGAAGGAATAGGGCACCTGAACAAGCTGG
AAAGTCTCGACTTCTCCGAAAACCGCATCGATACTCTCGATCAGTCAATG
GCCGCTTTGTTCAAGCTTAAAAAGCTGGGCCTCAGGGGCAACAACATCCG
GGATCTAGGGTCTTGCGTCGGTAGCATGATCTCCCTGACGTCTCTCGACG
CGGGTGGGAACAATCTGGAGCTGATTTCTCCCGAGCTGTCTCGCTGCACG
GCGCTTGAGACCCTTGACGTGAGCGGTGGGACGATAAGCCAACTGCCGGG
CGGGCTATCTATGCTCACCAGGCTCAGGGTTCTCCGAGCCCAAGATAACG
GGCTTAGGGCAATACCCCCCGACTTCAAAACGCTGACAGCGCTCGAGGAG
CTTCGCCTGGGCGGAAACCAGCTCAGCAGCCTTCCGGCCTCCCTGCACAC
CCTTACGAAGATGCGATACGCGGAGCTTTCTCGAAACTCCATGGAGTCTC
CGCCGCCGGTGACGCGGCAGTGGCCCCTGCTGAAGCATCTTGTTCTCTCC
AGAAACCCTTTGCGGGGTAGACATCGACAATCCCTCCGCTTGCTCCAGGC
TGCTCAGCGGGGACACGACGCCATGCACAGAGGGGTAAGGGGCAAGCCCG
CATGA
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