prot_Ecto-sp13_S_contig1193.1645.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1193.1645.1
Unique Nameprot_Ecto-sp13_S_contig1193.1645.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length210
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1193.1645.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.170e-9
Identity = 34/41 (82.93%), Postives = 34/41 (82.93%), Query Frame = 0 
Query:    1 LELQGGPEPNPGGFEKG-----AIPPELGRLGALTTLHLGG 36
            LELQGGPEP PGGFEKG     AIPPE GRLGALTTLHLGG
Sbjct:   80 LELQGGPEPQPGGFEKGNSIIGAIPPEFGRLGALTTLHLGG 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1193.1645.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVX5_ECTSI4.170e-982.93LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 26..50
e-value: 69.0
score: 6.4
coord: 147..171
e-value: 9.8
score: 13.3
coord: 99..123
e-value: 70.0
score: 6.4
coord: 51..75
e-value: 16.0
score: 11.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 13..109
e-value: 1.0E-26
score: 95.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 110..210
e-value: 1.1E-32
score: 114.9
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 149..169
e-value: 1.4
score: 9.7
NoneNo IPR availablePANTHERPTHR27008:SF246coord: 125..210
coord: 16..93
NoneNo IPR availablePANTHERPTHR27008:SF246coord: 42..141
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 68..166
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 42..141
coord: 16..93
NoneNo IPR availablePANTHERPTHR27008:SF246coord: 68..166
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 125..210
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 18..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1193contigEcto-sp13_S_contig1193:8048..15815 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1193.1645.1mRNA_Ecto-sp13_S_contig1193.1645.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1193 8046..15815 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1193.1645.1 ID=prot_Ecto-sp13_S_contig1193.1645.1|Name=mRNA_Ecto-sp13_S_contig1193.1645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
LELQGGPEPNPGGFEKGAIPPELGRLGALTTLHLGGNHLSAGAIPPELGQ
LGALEELFLSSNQLSGPIPPELGLLRKLKGMHLKYNNLSGSVPPELGQLS
GLELLRLTSNQLSGPIPPELGHLGSLTRLVMSDNKLTGKIPPELGRLSSL
RLLYLKNNHLSGEIPRELGQLGALEHLWLSTNDLAGEIPTELGHLGALEK
LHAMNNKLSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt