mRNA_Ecto-sp13_S_contig1193.1645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1193.1645.1
Unique NamemRNA_Ecto-sp13_S_contig1193.1645.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1193.1645.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.170e-9
Identity = 34/41 (82.93%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 LELQGGPEPNPGGFEKG-----AIPPELGRLGALTTLHLGG 108
            LELQGGPEP PGGFEKG     AIPPE GRLGALTTLHLGG
Sbjct:   80 LELQGGPEPQPGGFEKGNSIIGAIPPEFGRLGALTTLHLGG 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1193.1645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVX5_ECTSI4.170e-982.93LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1193contigEcto-sp13_S_contig1193:8046..15815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score66.2
Seed ortholog evalue2e-08
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
Model size633
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
Exons9
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
Cds size630
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1193.1645.1prot_Ecto-sp13_S_contig1193.1645.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1193 8048..15815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462631.2410076-CDS-Ecto-sp13_S_contig1193:8047..81211681462631.2410076-CDS-Ecto-sp13_S_contig1193:8047..8121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1193 8048..8121 -
1681462631.252586-CDS-Ecto-sp13_S_contig1193:9365..94371681462631.252586-CDS-Ecto-sp13_S_contig1193:9365..9437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1193 9366..9437 -
1681462631.2727208-CDS-Ecto-sp13_S_contig1193:9723..97951681462631.2727208-CDS-Ecto-sp13_S_contig1193:9723..9795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1193 9724..9795 -
1681462631.2805402-CDS-Ecto-sp13_S_contig1193:10273..103451681462631.2805402-CDS-Ecto-sp13_S_contig1193:10273..10345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1193 10274..10345 -
1681462631.2886863-CDS-Ecto-sp13_S_contig1193:12436..125081681462631.2886863-CDS-Ecto-sp13_S_contig1193:12436..12508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1193 12437..12508 -
1681462631.2972178-CDS-Ecto-sp13_S_contig1193:13001..130731681462631.2972178-CDS-Ecto-sp13_S_contig1193:13001..13073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1193 13002..13073 -
1681462631.3065066-CDS-Ecto-sp13_S_contig1193:13665..137401681462631.3065066-CDS-Ecto-sp13_S_contig1193:13665..13740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1193 13666..13740 -
1681462631.31591-CDS-Ecto-sp13_S_contig1193:14825..148971681462631.31591-CDS-Ecto-sp13_S_contig1193:14825..14897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1193 14826..14897 -
1681462631.3249946-CDS-Ecto-sp13_S_contig1193:15766..158151681462631.3249946-CDS-Ecto-sp13_S_contig1193:15766..15815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1193 15767..15815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1193.1645.1

>prot_Ecto-sp13_S_contig1193.1645.1 ID=prot_Ecto-sp13_S_contig1193.1645.1|Name=mRNA_Ecto-sp13_S_contig1193.1645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
LELQGGPEPNPGGFEKGAIPPELGRLGALTTLHLGGNHLSAGAIPPELGQ
LGALEELFLSSNQLSGPIPPELGLLRKLKGMHLKYNNLSGSVPPELGQLS
GLELLRLTSNQLSGPIPPELGHLGSLTRLVMSDNKLTGKIPPELGRLSSL
RLLYLKNNHLSGEIPRELGQLGALEHLWLSTNDLAGEIPTELGHLGALEK
LHAMNNKLSG
back to top

mRNA from alignment at Ecto-sp13_S_contig1193:8046..15815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1193.1645.1 ID=mRNA_Ecto-sp13_S_contig1193.1645.1|Name=mRNA_Ecto-sp13_S_contig1193.1645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7770bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1193:8046..15815- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAGCTGCAAGGGGGACCTGAACCTAACCCGGGTGGCTTTGAGAAAGG
CAATAGCATTATCGATGAGACCTGAATATGCTTCAATCCTACTTTGAGCA
GCGACGTTACCATGATATGTTTGATCGCAATGTCCCTCGTGTTTGCGGAA
CCAAAACCGTATGAATATCAGTCATTGCGAAAACACGTCTTCTTTTGACT
CTGCGACAAGCTTCGATTGCACAGTCCCCGACCGTTGACTACACCAACAG
TTTATCGGGCGGAGTCGACCGCCTGGTAATCACGAAGCGACGTGCACACG
GGGTGCATGCTTGAGCGTGAGATGAAAGAACCCGCGTTCGGAGGCATCCT
TCGCCTTTTCGGCTTAGCACTGGTTTTGGGATCCGGTGTCTGATCCACGC
GCTGAATGACTATGAGAGAGTCGCAACCCTCCCTGGTCATCTGAAGGGGG
TGTAGAGGTAGCGCAACTTCAACTGTGTGTGCGAACCTCGAGGGTTTAAA
AAAAAACACAGTATACGACGGTGTTGAACCCTGTTGCCACAAACATGGCG
ATATTTTTTTTCGGGCCTTGGCAGCTGCTTTCCCGTGGAATCTCTGTAGA
AAGGGTGACGTGTGCATTGTTTCTAGACGAACATCTGAGCTAAAGCTGAG
GCACGATGCACTGTAGACCGATTCCTTGAGTGCTGAGCTAGAGCTTCCCG
GCATGTCAGATGCGCGGGCGTCCATGCCACGGTGGTTTCTTGTTATCGGA
AGCCGACCAGAAGAGTTCCGAAGGAGATTTCCACGAGGAAGAAAAGGCCC
CAAACTCTTGGATTTGGTGTATGCAGTGTTCGCCGTTCTTGTGTCTATTG
TGCACTTCTTTTCCCGTACGAGCAACACAGCTAGCTTGATTCCCGCTGCT
GCTTGTGTTCTGTTACAGGCGCTATTCCTCCGGAGTTAGGTCGACTCGGT
GCTCTTACGACGCTGCACCTGGGTGGTAACCATCTCTCTGGTGAGGCCGA
TGTAGCACGCCGTCAGTCCTTTCAAGCTCCCGAACCTAGCTCTGTCCATT
CCTCATTGGATCGGTATTTGAGTATGGCAGCAGCTTTTTTATATGGAGGT
CGGTTGTGGGTGTAAGCCTTCGTGCCCGCTGCTTGAAAAGGTTAAAGATT
TGTGTTGACGCCTTTCTATCTATTGACGTCTCTATACGTATGTGGTAATT
TAGTTCAAGGTTCCTGTACTCATCAGCATGCTGACCCTTCCCGCTATCTT
GAACCGCAGGCAGCGTCAGCGGTAACGAGAGGGTAGCCCCCCAGAAATCA
GTTCAACCATGATGCATAGTGCGGTCGACACGGGTAATGAGGGAACCACC
CCCTTCGCTGTTCGCTCTGTGACAGTTGCACTGGCGAACCAGCCCGCCGC
TGACTTTCAGCATCATGCTGTTATTTGTTTTTTGACTTGAAAGCCACGCC
AACGTTGTTCCCAACATCTCCGCCTGCCCCGATCCTGACGGTGGAAATTC
GAAGTATTTTCCAAGTGTCTTGAGGGCAACAGCTGTTCAACCCCCCCACC
CGTTCATGGATTCACCCTGATGAGTGTTGAGGCCTTAATTATTGTTGTCC
ACCTTGGACAAAATGGGTAGAGCCCATGTCATCCGCTTTCCCATCTACTG
AGTTTGATATCGGTAACTAGGGTTGTCTGCCATGCGCTGGTACGACACTG
TCTTGATCCAACATGGCATGATGTTGTGTTCGCCAGTCGTGTCAAGGTGT
TTCTACCTTGCCTGTACTTTCTGACGTGTTGTCACCAGTTTTGTGGCCGT
TCACCAAGTAGAGTCGACTGAGGCACACCATGACACATTTTTATTTTATG
TTTTAATCAGTTTCTTGTACTCAAGACTATTCCCATCCTCAATAACACCA
AGTCGCGAGGGTTTTCCGAGCTGTGGGACAAAGCGCGGTGTTTTCTATTG
TTAAGCCTGTACCCCCAATCTGGATGTTGGCTGTCATAATGCAGCTGCAC
AACCGGGTACCATCGCGTTCAGATGAAAGACCCCTCATCCCTCACATCTC
GCGGGCCCTCATGTTTGATTGGAAGCAGGCGCAATTCCACCAGAGCTTGG
TCAGCTGGGGGCGTTGGAGGAGCTGTTTTTGTCGTCAAACCAGCTGAGTG
GTAAGCTAAACAACCTTCTCCCGTTCTGTACCGCAATAACTCGTCACTAT
GTACATCGCACACTTTGTTCCACATTGTCGAGGTCTAGAACCTTCCCATT
CAAAGGTGGTCGAGTTTTTTGAGCAATCATCTCGACCGCTATAGGTCCTC
CCCGAATGTCGGAGCTTACCCTACGAGGGTCACGGACTATTTAGGGACAG
TTTCTCCAATCGAAAAATCATAGCCGAAGTTTGCTGGTCGGGTATGCTAA
GCACGAAGACATCGCTAGCCGTAAAAGCCGCCAGTGTTTTTCGCCGACCT
GCACGGCGCTTGATAGCTGTACAGCACTCCCATTAGGGAATGGACTCAGA
ACTCGTTGTTGTCGTGGCGGTGATGCAAAGGCTAGCAACGACGTCGGCTT
GTGGTTGGGGTATTTGATGACAGTCAGGATTGCCTTGTTAGTGTCACGAG
GAATACGCCCCCTACAACCATTCTGTCAAATGCATACGCGCATTGAAGCT
TTGCCTGTCGTGTCCCTACTACACGTTGTCAATTCGTCTGAACGCTCTTC
TGTTCGTTTGGCCGGATGCCCTCTGCATACAAATGTTCACAGGGCCCATC
CCACCGGAGCTTGGCCTACTCAGAAAACTCAAGGGGATGCATCTCAAGTA
CAACAATCTCTCTGGTAAAGGCTGTAACATCGACGGCATGTCAACGATAT
GGCTATGGTATTGTCTTTGATCCCGGTGGGGGCTTTCTGTGGGCCTGTTT
GCCATCGCACACGGCAGATGGCTTGACAGAATTGAACGGCTGTTCCGGGT
GCACATTTTTGCGCTTTCGTGTCACACACATTTCCTTCGATACATGGATG
TGCGCGCTGAATATTTCACTTCCCGTGATATGCACAATGCGACAACGAAG
CCTTGCACCTCCTTTTTCTTTGGTTGCTTCACGGGCGTTGGAACCCCTGG
ATGGGCTTCTCTAGTTGGTTGTCGCTAAGAGGTTGTACCGAGTCGACGTT
TCCTCTGCCTCGCGACGCATGCTCCACCTCACTCTGGAGAGCAAGGCAGC
ATGCGGGGCGAAGTACTAGTCGAAACACCATGGCGAAAATGGAAGCGAGA
AAATATACTGCATGCTGGCGAACACGTTTTCGAAAGCTTGTTTCCCGCTG
TTTACAGGTTCAGTCCCGCCGGAGCTGGGTCAACTCAGCGGTTTGGAGCT
TCTGCGTCTGACGAGCAACCAATTGAGCGGTAAGACCATGCAAGCTCTTG
GCTTCTATCATCTTCTCCTCTAATATTTTTTATTATTTTAAATAGTCCTA
CGCTGTACCTAGTATAATGATGGGTACGGCGTATTGGGCGCCGTCTATCT
CTTGTCTGGCCGATATAGACCACCGCAGCACTGCGATCACACCCTGGTGG
GTGAGCGTTGGCAATTTCGTTGTGCCGACTCTTGGAGCTCCCACATTACT
GGTAGTCTTTCCAAACCACCCATGGGGCACCCATGGGTAGCCCATGAGCT
GCCCAAAAGTGCGCACCGTGGGCTCTTCAGCCTAGAACTTCGCCATCGGC
ACACTGCCCATCGTGGGCATATCAACCAAGAACTTGGCCACCAGCACATC
AACCAAGAACTTAGCCATCACGCCAATCCAGATCGTATCGTGTGGGCTTG
GGTTTAGGGCTAGGATTATCGTCAGGGATTTCGCCGTTTTAGTGCCCCTT
CCAAAGCACATAATCTAATTTTTAGGAGTACTCTGGTTCCGGTTGAAGGG
GACTCATGGACTGGCCATGGACTGCCCATGAACCATGGGCACTCCATAAA
CTGCCCGCGAAGTGTTCTGGTTCCGGTTGAAGGGGACTCATGGACTGTCC
ATGGACTGCCCATGAACCATGGGCACTCCTTATACTGCCCGCGAAGTGTC
CACCATGTTCATGGGCATTTCCGATTGGCCGCCCGTGGGCATCAAGTGCC
CATGTACAGCCCGGGAGCTGTCTATGGGCAGCCCACGGGCACAACCTGGT
GCCCATGTGCAGCCAATGGGGCCCATGGGTACCCCATGGGCGGTCTAGCA
CAACCGCCGAAAGTGTGGGAAACCCGACTCCTGCACGTGAAGATTTATAC
ATACTCCAAGCCACAATCGTTATTTAGCCTACGCTCTCAAATGTAGCTGT
TGGATTCGTGCAAATGAGCAAACCAGGACGGACCCTTTGAAAGACTGGCG
TTGGAAAGTCTGCAATTCGTAGTCATGTTGACGTTGCGACGTCTTGAAGC
TTGTAGTCCTTCCGTAGACTTGAAGGCGCTAAAATACGTTGGGTACGAAG
TGATTATTCAGACTAGAATCCGAACAAATATCGCTGGCAGCATTCAGCTA
GATACCTACGTGTTGAGGCCCCACAATGGTGTGAAAACATATGTTGTGAA
AACACTTCTTTAGTCGCACCATGGCCAGCCACTACCAGCACGCCAGGCTA
CATCCGCACAACTTGCTGTGTGATCTAATTCGACGACCGTATGCTGCGTC
GCCGAATACCGAAACTAACCGCACCCGCGAGTTCTCTAGCATGTTCGTGA
GTCAAGGATGTGCTGTGAGGTTGTTTGGTTGGCGGTACATCTTTCTCCTG
GTGTCTACGTTCGATTTCAGGAGATCAATCAAGGTCACTGGGACGGGTGA
GCTGTCATGGTTACAGCCCGGTGTTATTGAGTTTGTCAGTTGAGCTTTGC
AAAAGGCCAGAGTAATGGTCGTTCTTCACCATACTGCGGCATACACAAGG
AGTGAACTAGTTGTGAAGTCAACGAAGAAAATCGAGCGGGCCCGATTTCA
AGTGTTGTTCTTGTCTACTACAGCAAGCTCACAGGGGTTCCGAAACCATT
ATCAGTCGACATAAGGCTCCTTTGAGGTTATTGCTCGACATGCTTCTCCT
GTCCGGTAGGTAGTTTTGACTGCGGGCGCACGGTCCCAGCGGAGGCATTG
ACAACGCTAGGCCGGTGTCATTGAAACAACGCCGCAATCAATGTACTACG
CCGAATGCCCGAAGCGCGAGGAATCGGACCATCGGCCGTCCTGCGATGAA
AATGCAGTTTGATGAAATTGCTGATCAACAAAATACTTCTTCCAATGTGT
TTTTACATCATCAGGGGTTTCAAATTGGTGTTTAATTCTCGTTCGTGTCA
TGGACCTCTCTCATGTAGGAAAATAGCGGTGGTCACAGGATCAACGATAC
AGTGTTCTCGATAGAGCAGGCCCGAGGTATTCGCGGAAGGTTGTACATGT
GGTGTCGAGTTTAATGTTGATTCGCTCATCGATGCCTCTTTGCACGGCCC
TCAACTTGGACTGTATGCAGGTCCGATTCCACCTGAACTCGGCCACCTGG
GGTCTCTAACACGACTTGTCATGTCGGACAATAAGCTTACCGGTAAGGAG
GGATGCACTTCTCGTGAAAAATCCCCAAACATGCTTGCTTTCACTACCAA
AATGTAAGATTCATTTCACTCTGCAATTTATTCCAAGTTTCGAATTTCAA
ATACGTTCCAGGATCGGCACCTTAAGTGTCGTAGTTCAACCTCCGCCTAT
GCTATGTAACCCCTGTCTATTAATGGTGTCATGCATCAGCTTGCTGGTGA
CCAAGTTAACGGAAACGCTACATGCCTTGTTTGGCCGTCCAATGTTTGCC
GTAGAACTGAATATGAAAATCTCTGTGACTCGTATGAGTCTATCCTCGCG
TGGACCAGATGGTGCCTGAGGGTTGGGCTCAACCTTCGTTATGCTTTGCC
GCCTGGCATGCCTGATCTCGTTTTCCTCCTTTGCATTTCAATACCGATAC
GAGCGGGCGCTCGTGAGCTGACCTCCTTGCCCCTCCATGGCTTTACACAT
GATTCCGCTTCTCTCCGAAGGGAAAATCCCGCCAGAACTTGGTCGACTCA
GCTCTCTTAGGCTGCTTTACCTGAAGAACAACCACCTCTCTGGTGAGAAA
GCCTGTGAAGCGTTGATTTTCTAGAAACGTTGCCGAATGACTACGCCTCG
TTGACACTGCCTCGAAGCGTTTCAATATACATGCTCTTGGAGCAACGTCT
GGTGTTTTCCATAGAAAGGTGTCGTGCACACGGCCGAATGAGGAGGTTGT
GCCTCACGCAGGCCCACTGCTGTAATGCCGACCCCACGGCAGAAAACAGC
CCACAATGAAGGCAGCCTACAAAACATTGTCATGAAAGCGGAATAAATCT
GATTGGTCGTGTTGCGACATATTTGCAGGCGAGATTCCACGCGAGCTGGG
TCAGCTGGGGGCTTTGGAGCATCTGTGGCTATCGACGAACGACTTGGCCG
GTAAGTTCAACAGAAACTATGACCATATATGTAGTCTGTTGTTGCCGATT
GGTTTGGGTGGAAGCCTAACAAAAGGTTTCAGTAGTTGCGATGGCACTTC
TGGCGGCTTGTGCCTGGTAGGCGAACTTTTGCCATCTTGGCCGAATGGTA
GAAGTTGATTGCGCAAGGTTTACACTTTGTGGCTTTGAGTTGTGAAAAAG
GTTTTGGAGGGAACGACAAAACTGTACGTACGTGCAGAGACCTGTAAAAC
AAAGAAGTGTGGTCGGTATTGGTGTTGACTCGGTAAGCTACGTGTTCATT
CTTGGGTATATGCCCAATTCACACACGAGCACGAAGATTCTCGCACCTCC
GCACTAAAGGTAGCTGGTTGTGGAGCGGCCACCAGAAACGTTTGATATGC
ACATTGATTGCAATCAACCTGTCCATTCTTGCGTAGACCATTTCCTGAAA
CAACAGGTCGGCTGCACCGACAAAACCATCCTCTGTATGAGGAAGGCCGT
GCCTCACACATAAGTCTCTGTCGTTTAATGTCTTTTCCTCTCATACGATG
CTCGCGCTTTAAGGAGACGAGAGTTGGTTGCGTCCTTTGCTCCTCAAGCA
GTTCCTTCGTGTTGCAGGCTCCTACCGTCACCTTGTCGCTCATGGGGACA
TGCATCCGAGAAGCGATTTTCCATTGAATATATGATGGTGTGGGCGACTA
AATAGGGCACCACCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTG
AGATGGTTATGTACTTTCTAGGCCTGGTGGCTTGACATTGCCGTCTGAGA
GTGAGTCCTGCCCGAACTGAAGCGAGCTGGTCTGCTTGGGGGGACTTGCG
TCACGAAACATGATGGTCGTTCGTGCTCGTTCACAGACCCTTACAAACAA
TACCACCTTCGACAGCGAGTACCACATTTCGCGAACTTTGCCCACCGCGA
ACCACATTTTCGCGAACTATGGCATGCCGCGAGTGTGCCGTGGGTAGATA
TGCGTGGAATCATGAGTCGTCTCCTTCACAGGTAGATATGCGTGGAATCA
TGAGTCGTCTCCTTCACAGCGTGCCGGCTGCTCTACTCGCGGCACGATGC
ATGATGACACCATTTTTTTGCGCCACGGCAGGGCATACTTGTCTCAAGAT
GGAATTAACGATATGCTGCTTTGATCTGGTACGACGATTCGCAGGTGAAA
TCCCGACAGAGCTAGGTCACCTGGGTGCTTTGGAGAAGCTGCATGCGATG
AATAACAAGCTGAGCGGCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1193:8046..15815-

>mRNA_Ecto-sp13_S_contig1193.1645.1 ID=mRNA_Ecto-sp13_S_contig1193.1645.1|Name=mRNA_Ecto-sp13_S_contig1193.1645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1193:8046..15815- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAGCTGCAAGGGGGACCTGAACCTAACCCGGGTGGCTTTGAGAAAGG
CGCTATTCCTCCGGAGTTAGGTCGACTCGGTGCTCTTACGACGCTGCACC
TGGGTGGTAACCATCTCTCTGCAGGCGCAATTCCACCAGAGCTTGGTCAG
CTGGGGGCGTTGGAGGAGCTGTTTTTGTCGTCAAACCAGCTGAGTGGGCC
CATCCCACCGGAGCTTGGCCTACTCAGAAAACTCAAGGGGATGCATCTCA
AGTACAACAATCTCTCTGGTTCAGTCCCGCCGGAGCTGGGTCAACTCAGC
GGTTTGGAGCTTCTGCGTCTGACGAGCAACCAATTGAGCGGTCCGATTCC
ACCTGAACTCGGCCACCTGGGGTCTCTAACACGACTTGTCATGTCGGACA
ATAAGCTTACCGGGAAAATCCCGCCAGAACTTGGTCGACTCAGCTCTCTT
AGGCTGCTTTACCTGAAGAACAACCACCTCTCTGGCGAGATTCCACGCGA
GCTGGGTCAGCTGGGGGCTTTGGAGCATCTGTGGCTATCGACGAACGACT
TGGCCGGTGAAATCCCGACAGAGCTAGGTCACCTGGGTGCTTTGGAGAAG
CTGCATGCGATGAATAACAAGCTGAGCGGC
back to top