prot_Ecto-sp13_S_contig1189.1610.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1189.1610.1
Unique Nameprot_Ecto-sp13_S_contig1189.1610.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length293
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1189.1610.1 vs. uniprot
Match: A0A6H5JWU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU0_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.060e-66
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 0 
Query:   14 MASSALPIAVAVEGKSTGIGVVCSIADEDDKAPLLVLHHHTNGRAWLRGDGGPWQGWGLQDPLERWSGVAVKGERIVGLKLYQCKLMGFIPHELGSLSCLLYLDLGRNQ 122
            MASSALPIAVAVEGK TG GVVCSIADEDDKAPLLVLHHHTNGRAWLRGDGGPW+GWGLQDPLERWSGVAVKG R+VGLKLY CKLMGFIPHELGSLSCLLYLDLGRNQ
Sbjct:    1 MASSALPIAVAVEGKPTGSGVVCSIADEDDKAPLLVLHHHTNGRAWLRGDGGPWEGWGLQDPLERWSGVAVKGGRVVGLKLYLCKLMGFIPHELGSLSCLLYLDLGRNQ 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1189.1610.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWU0_9PHAE2.060e-6694.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 231..255
e-value: 150.0
score: 3.6
coord: 110..133
e-value: 58.0
score: 7.0
coord: 158..181
e-value: 22.0
score: 10.4
coord: 182..205
e-value: 48.0
score: 7.7
coord: 134..157
e-value: 33.0
score: 9.0
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 136..156
e-value: 0.71
score: 10.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 39..214
e-value: 8.8E-40
score: 138.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 215..288
e-value: 8.0E-10
score: 40.3
NoneNo IPR availablePANTHERPTHR27000FAMILY NOT NAMEDcoord: 88..267
coord: 34..198
NoneNo IPR availablePANTHERPTHR27000:SF525coord: 88..267
coord: 34..198
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 78..274

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1189contigEcto-sp13_S_contig1189:13225..18517 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1189.1610.1mRNA_Ecto-sp13_S_contig1189.1610.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1189 13225..18517 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1189.1610.1 ID=prot_Ecto-sp13_S_contig1189.1610.1|Name=mRNA_Ecto-sp13_S_contig1189.1610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
LHGIALHRWGATRMASSALPIAVAVEGKSTGIGVVCSIADEDDKAPLLVL
HHHTNGRAWLRGDGGPWQGWGLQDPLERWSGVAVKGERIVGLKLYQCKLM
GFIPHELGSLSCLLYLDLGRNQLFGSIPPEFGALRQLRTLDLHHNQLSGP
IPEELGALSELRELSLGSNQLTGSIPAALGRLGSLEVLRLTDNMLSGAPS
CQESKRKRNVREHVKGQSELAGEIPKELGLLSGLISLWLHKNNLSGNIPQ
ALGALHLLENLWLKDNKELKYIPMVTKMQLRRKMKGACDIRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf