mRNA_Ecto-sp13_S_contig1189.1610.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1189.1610.1
Unique NamemRNA_Ecto-sp13_S_contig1189.1610.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1189.1610.1 vs. uniprot
Match: A0A6H5JWU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU0_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.060e-66
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:   40 MASSALPIAVAVEGKSTGIGVVCSIADEDDKAPLLVLHHHTNGRAWLRGDGGPWQGWGLQDPLERWSGVAVKGERIVGLKLYQCKLMGFIPHELGSLSCLLYLDLGRNQ 366
            MASSALPIAVAVEGK TG GVVCSIADEDDKAPLLVLHHHTNGRAWLRGDGGPW+GWGLQDPLERWSGVAVKG R+VGLKLY CKLMGFIPHELGSLSCLLYLDLGRNQ
Sbjct:    1 MASSALPIAVAVEGKPTGSGVVCSIADEDDKAPLLVLHHHTNGRAWLRGDGGPWEGWGLQDPLERWSGVAVKGGRVVGLKLYLCKLMGFIPHELGSLSCLLYLDLGRNQ 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1189.1610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWU0_9PHAE2.060e-6694.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1189contigEcto-sp13_S_contig1189:13225..18517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score60.1
Seed ortholog evalue2e-06
Seed eggNOG ortholog1004149.AFOE01000018_gene655
Model size879
Hectar predicted targeting categorymitochondrion
Exons9
EggNOG free text desc.PFAM Leucine Rich Repeat
EggNOG OGs1I0CI@117743,4NI2K@976,COG4886@1,COG4886@2
Cds size879
COG Functional cat.G
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1189.1610.1prot_Ecto-sp13_S_contig1189.1610.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1189 13225..18517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462627.6196516-CDS-Ecto-sp13_S_contig1189:13224..133191681462627.6196516-CDS-Ecto-sp13_S_contig1189:13224..13319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1189 13225..13319 +
1681462627.6292188-CDS-Ecto-sp13_S_contig1189:13887..140931681462627.6292188-CDS-Ecto-sp13_S_contig1189:13887..14093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1189 13888..14093 +
1681462627.6418214-CDS-Ecto-sp13_S_contig1189:14649..147211681462627.6418214-CDS-Ecto-sp13_S_contig1189:14649..14721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1189 14650..14721 +
1681462627.6523786-CDS-Ecto-sp13_S_contig1189:15385..154571681462627.6523786-CDS-Ecto-sp13_S_contig1189:15385..15457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1189 15386..15457 +
1681462627.6598203-CDS-Ecto-sp13_S_contig1189:15878..159501681462627.6598203-CDS-Ecto-sp13_S_contig1189:15878..15950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1189 15879..15950 +
1681462627.667416-CDS-Ecto-sp13_S_contig1189:16219..162951681462627.667416-CDS-Ecto-sp13_S_contig1189:16219..16295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1189 16220..16295 +
1681462627.6754394-CDS-Ecto-sp13_S_contig1189:16422..164901681462627.6754394-CDS-Ecto-sp13_S_contig1189:16422..16490Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1189 16423..16490 +
1681462627.686933-CDS-Ecto-sp13_S_contig1189:17594..177441681462627.686933-CDS-Ecto-sp13_S_contig1189:17594..17744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1189 17595..17744 +
1681462627.7009504-CDS-Ecto-sp13_S_contig1189:18449..185171681462627.7009504-CDS-Ecto-sp13_S_contig1189:18449..18517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1189 18450..18517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1189.1610.1

>prot_Ecto-sp13_S_contig1189.1610.1 ID=prot_Ecto-sp13_S_contig1189.1610.1|Name=mRNA_Ecto-sp13_S_contig1189.1610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
LHGIALHRWGATRMASSALPIAVAVEGKSTGIGVVCSIADEDDKAPLLVL
HHHTNGRAWLRGDGGPWQGWGLQDPLERWSGVAVKGERIVGLKLYQCKLM
GFIPHELGSLSCLLYLDLGRNQLFGSIPPEFGALRQLRTLDLHHNQLSGP
IPEELGALSELRELSLGSNQLTGSIPAALGRLGSLEVLRLTDNMLSGAPS
CQESKRKRNVREHVKGQSELAGEIPKELGLLSGLISLWLHKNNLSGNIPQ
ALGALHLLENLWLKDNKELKYIPMVTKMQLRRKMKGACDIRL*
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mRNA from alignment at Ecto-sp13_S_contig1189:13225..18517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1189.1610.1 ID=mRNA_Ecto-sp13_S_contig1189.1610.1|Name=mRNA_Ecto-sp13_S_contig1189.1610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1189:13225..18517+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTACACGGAATCGCTCTGCATCGCTGGGGAGCAACTAGAATGGCGAGCTC
CGCGCTTCCAATTGCGGTTGCGGTTGAAGGCAAATCAACAGGTATGTGCG
TCCAACTACTTGTATTGCGGCGAGTTTCTACTGCCGTACGGCGGTGGAAC
AGATCTATCATTGTACCACCAACATCAACGTAAGGAAGTCTGCTGCCCGT
ACTGCTGTAGGCATGCAATCAGCCCTTCACCTGTTTATGACGATGGAGAT
ACCCGGAAGAAACACATGTTTTGACTTCGTACAAGTATGATTTTCTTGTC
GAACCAGCACTGCCTGGGCTCGCACACAGGTGGGCATGCTGTCGTGCAGC
AGAGACGCCAATTGTCATCCTAGCGACGTTAAATGCCAGCGAGAACGGTC
CACGGTGTAACATGCGGTTGAACGGCCCTCCTTGCCTGCAGTAGCCAACT
GCTGTGGCAACGCCATATACCTGAGAGCAGTGCGCACACTACACATACAG
AGAATACCGGGTACTTGGGACCGTTTGCGTCGGCGACGTGCTTCAAGAAC
ATCTACAACATGGAGTAGGCCATATCGTCGTCAAGGGTTCTTCAACAAAG
GGGCTGAGCTGTTTTCTGCGTGGTCCACATTCTTGCGTGCCATCCTGTCA
ACAACCTAGGAAGCGGCGTTGTGTGTTCGATTGCAGACGAGGACGACAAG
GCGCCACTCCTCGTGTTACACCACCACACCAATGGCCGCGCATGGTTGAG
AGGTGACGGGGGACCCTGGCAGGGCTGGGGACTTCAGGATCCGTTGGAGA
GGTGGTCAGGCGTGGCTGTAAAGGGCGAGAGGATCGTCGGTCTCAAGCTT
TACCAGTGCAAACTGATGGGTAGGTGCAGCGGCTGCTTTTCCCTGGGCCG
CCGGTTGTTGCCGCTCATGAACGTTTTGGGGATGGGTCCCGGGCGAGTGT
TTAATGACAAGGGGAGAATTGGAAACGGTTTGCACAGTCGTGGACAGATG
CACACGAAGAACGGGTTTCGTATAGGTCAATGATCTTAGGCGTGTGGGCG
GGGCGGTAATGGTGAGCTACTGTAGCTCGTCAGAGTCTACGTCCCACTCG
TAACCAATGCAACCCCAAAAGCCGCCAAATCACTCTTGCAGGCACAGGGA
GTGCGCAATGCTACCGTGATCGGACTTCTTCAACGTTTCGTATGACAGAG
GTGTTCGCTTATAAATCCCGCCGCAGAGAGGAAACCTGTCTGCCAATACC
GTGGCTACTCAATCCTTACCCTCTTCGATTGCACAGGTCTTGCGAACGAA
AAAGCAGGGCAATGCTCATTCGGTCGAATATGACGGTGCGGTAGTGGTGT
TCGAAGTCACTTTCCACGCCGGACATCACCCTACTGTAAAACACACCATG
TCTTTCTCGCACGTATTGTCAACAGGATTCATCCCGCACGAGCTCGGAAG
CCTGTCCTGCTTGCTGTACTTGGACCTGGGGCGCAACCAATTATTCGGTA
AGTGAGAAGGTCCTTCGAACCTAGCCAGCCCCCCGAGAATGTAGTTCGGA
AGCGTTTAATGCGACAAGACGTTGAGCCTAGAGCTTCCCACTATCAGACA
AAGAATGTGAATTTTATCCGGGGCAGGACGTAAATGTTGTGTGCGGTGCA
CGCGCATGTTGATCATGGCCTAGAGCTTGCGGCGAGACGAATCGTAGCGC
GTTCAGCTATTCGCACGTAGTGTCCACAAGTTCTCACGCGTCTATGTACC
AAGCCGTAATTACGATGTGTCCCACCTCAATATGATGTACAGCTTTCGCT
ATCGGATTCAGGCACGTGCAGTCATCCATCATGAAAAATTGAAATATAGG
ACGTGAAGAGGTTATCTTGGCTTCCTTCGATGGAAGTGAAGCGACCACGT
GCAGGACCTAAGCACGTTCAGCCGGGCATACGTTGGAAGACTGTTGTTCG
GCGAGGCAACATCGGGTAACTTGTTGGGTTTTGTCGGAAGAGACGGAAAC
AGTGAGATCGATTTCAGGACGCCAAGCGTTTGCTGCGCACGATACTGTGA
GCACTGTTTCACAAGCTGTTGGACCAAAATATCGTCACCCAGGAAACTGA
CTTTGCTCGGCGCACGGTTTCGGCCCACAAAATCTTCCCGAATGCTTATG
GCTTTGGACAGGATCGATCCCACCGGAATTTGGGGCACTAAGGCAATTAA
GAACCTTGGACCTACATCACAATCAGCTATCAGGTTCGTTTGGTGGGGTG
TGCGACTTCAATTCGGGTGTATGGCTGCATTGTAGAGAGTGCTGTTGATC
GCCTCTCTTTGCAGATTCGAAGGATACGTAGTGCTAAGCTCCGCATGTTC
AGTCTTGGTGCCTTCGGAAGCGTTCACCGAGTGCAAGGGTTGTGAGCACG
GCTACGTTCTTGTACCTCAAGAGCTGTGTGCTTGAATTTTTCATCCATCA
TGCAGTATATTAGAAAGGGAGGGACTGAGGACAGGAAGCTTGTACCCTAG
GGTGTGCGCGACATCCGCCCTACCAATGCGTGGGCAGGACATGAGTTTTA
TCGGCCACACTCCGAGGGTACACCCACAAGCCGTGCGATCATCCGACTTT
CATGGTGCGATCAACGGGTGCCCGTTCCCTTGTCGATGTTTACGGCTCGC
GCAGGGCCCATCCCCGAAGAACTGGGAGCTCTCAGCGAGTTGAGGGAGCT
CAGCCTCGGCTCAAACCAGCTCACAGGTACTGGGCGCGTCTCAAGGTTTG
GTTGGTCGTCGTCTGAGGACGTTTTTGAAGAGTGATGGGCTTGTCCTACT
GTAGACCACTACAGAGCGCGCTTAGGTCCATCCAAGGTTGCCGTGAACGG
CATGTCACGGTAGGAACAGACGTCGAACATGATAAGCTGCATCGTCCTTC
GGTGCATGTGCCGTCGGAATACAGGGTTGTTGCTAAGGATTGACATGTCT
GTACATGTTTCTTCCTCGACGTCGCTTCTTTTCCGCGAACTGCAGGGTCT
ATTCCTGCCGCCCTGGGCCGCCTTGGTTCATTGGAAGTGCTACGGCTGAC
GGACAACATGCTTTCTGGTGCGTAAGGCTCTGCCTCTGCAGTCATGCAGA
GATCTTCCTTGCACGTACCTACAATGAATGGGCTGAAACACTGGGAGGTC
AGGTTGTTACATAGTGTTCTTGTTTCTGATACAAATGCGGAGACCCAGGC
CAAGTTGCCAAGAAAGCAAGCGGAAACGCAACGTCCGGGAACACGTGAAA
GGGCAATCCGAACTCGGTGTGGGGTATGACGAAACGCCTCCCGTGCTTGG
CATCGTGCTGCCGGTTTGCGTAGGCCCTACGATGGTGACGGGTGCTTGAA
CTCGCGCGCGCGACCAACATCTGGAGTAACAAGTCATGACGCAAACATGG
TCACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGCCGTGTATGACATGTTGTGTTGTATTTCTAGTA
CGAGCCGCATAGGGCCCAACGTGTGCACAAAGGCCAAGGGGTCTTGGCGT
AGTCGAACAAGTATGCATGGTCAGGTGGGACTGGCTTGGTTGTTGCCGAG
GACGTGTGAACGGTAGACTTGAGCATCACCGGCACAAGATGGTTCAGCGC
CTGTCGCCACGTCTATCTCAGGGATACACCATGCCTATCGTGACCCGACC
AACGGAGATCGTACAACAGAAATCTCCTGACAAGAAATGCGTCCAACGTA
CGGTATTTTTCGCTGCCAAGCAGGCGAGATTCCAAAGGAACTAGGATTGC
TTTCGGGGCTGATCAGCCTCTGGCTTCACAAGAACAACTTGTCCGGAAAC
ATCCCTCAGGCCCTGGGGGCTTTGCATCTCTTGGAAAACCTTTGGCTCAA
GGACAACAAAGAGCTGAAATGTGAGCACGGCTTTAGCCGCAGACACAGGC
AGAGAGCGTGAGGAGCCCGTATTGATTATTCGGTAGATTGCGGCCGCCCC
CCTTCAAACCGATTCGCTCGGCGGAGATACATAGCACAGTGCCACGATGT
CCATCTAACCAGTTACCCTGAATCGTCTAACGTGACAACTTGGTGGACTC
GGTCGCTATGTTAGCGATGCAGACCGTAGACGAAGCACTAGGAAATTTGA
AAGCATTTTCAAGTGCATTCGCTGTGAGCGACTCTGGCTTGATCAACGGC
TGCCGGTATGACACTGATCTACATGAAGTGTAGAGGCGCGCAAATAGAAA
GAGCTCAGCGATATGTTGGCGGGTTTTTTGCTCGAGCAACGACTTAATCA
ACACAACGAAAACCATGCTTGCATCCTAGAACAGCGCAGCTGAGGTAGAG
GTTATTACTGGCAACGCGGAATGAGCATTCGCTGCTCTTTGAAACAGAGC
ACTTACTTGGGGAATAAAGAACGGAAGCAGGGGATGACAGCGTAGGAGAA
GGATATCATGTAGCTTTTGAGCCTTCACAAAACCAAAGCTGTGCCAGGGG
CGCGGTGTTGCAATGTGGGTCGCTCACGTATGTTGTACGAACGTCAATGT
TCTGGTACGTGGTACGTTCCTGGCGAAATTCCTTTGTAACATTGAAACTC
CGGTTTGAAAATGTTTCGCGCGCAGACATACCGATGGTGACCAAGATGCA
GCTCCGGAGGAAGATGAAGGGCGCATGCGACATCCGTCTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1189:13225..18517+

>mRNA_Ecto-sp13_S_contig1189.1610.1 ID=mRNA_Ecto-sp13_S_contig1189.1610.1|Name=mRNA_Ecto-sp13_S_contig1189.1610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1189:13225..18517+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTACACGGAATCGCTCTGCATCGCTGGGGAGCAACTAGAATGGCGAGCTC
CGCGCTTCCAATTGCGGTTGCGGTTGAAGGCAAATCAACAGGTATCGGCG
TTGTGTGTTCGATTGCAGACGAGGACGACAAGGCGCCACTCCTCGTGTTA
CACCACCACACCAATGGCCGCGCATGGTTGAGAGGTGACGGGGGACCCTG
GCAGGGCTGGGGACTTCAGGATCCGTTGGAGAGGTGGTCAGGCGTGGCTG
TAAAGGGCGAGAGGATCGTCGGTCTCAAGCTTTACCAGTGCAAACTGATG
GGATTCATCCCGCACGAGCTCGGAAGCCTGTCCTGCTTGCTGTACTTGGA
CCTGGGGCGCAACCAATTATTCGGATCGATCCCACCGGAATTTGGGGCAC
TAAGGCAATTAAGAACCTTGGACCTACATCACAATCAGCTATCAGGGCCC
ATCCCCGAAGAACTGGGAGCTCTCAGCGAGTTGAGGGAGCTCAGCCTCGG
CTCAAACCAGCTCACAGGGTCTATTCCTGCCGCCCTGGGCCGCCTTGGTT
CATTGGAAGTGCTACGGCTGACGGACAACATGCTTTCTGGTGCGCCAAGT
TGCCAAGAAAGCAAGCGGAAACGCAACGTCCGGGAACACGTGAAAGGGCA
ATCCGAACTCGCAGGCGAGATTCCAAAGGAACTAGGATTGCTTTCGGGGC
TGATCAGCCTCTGGCTTCACAAGAACAACTTGTCCGGAAACATCCCTCAG
GCCCTGGGGGCTTTGCATCTCTTGGAAAACCTTTGGCTCAAGGACAACAA
AGAGCTGAAATACATACCGATGGTGACCAAGATGCAGCTCCGGAGGAAGA
TGAAGGGCGCATGCGACATCCGTCTGTGA
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