prot_Ecto-sp13_S_contig11889.1608.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11889.1608.1
Unique Nameprot_Ecto-sp13_S_contig11889.1608.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length377
Homology
BLAST of mRNA_Ecto-sp13_S_contig11889.1608.1 vs. uniprot
Match: D7FP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP11_ECTSI)

HSP 1 Score: 652 bits (1682), Expect = 7.300e-234
Identity = 326/375 (86.93%), Postives = 337/375 (89.87%), Query Frame = 0
Query:    2 QSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDEDERVRGDDIGGGPAAMMVSAAKRSGGHSSRLSPGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFVVGISILVATDRLSMNSGLEDGLPLAVGAQDGPAACTIETAAWDASNNNPDLRAPSSSPLLLDGVVNDLLCPGCSRLVAAPTSFCGGDICSQCGGGXXXXXXRGGGRVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYVAVGLGILVGTGTFFNLAGTISPVAALKQASKRHMGDHHHSQVHQHNRHEEAMPLLSNSDQPETDTDTHSHVTEAWAAFDVTASLPPASRYAFFGVG 376
            +SLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDEDER+RGDDIGGGPAAMM SAA RSGG SSRL PGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFV+GISIL+ATDRLSMNSGLEDGLP AV  Q GPAACTIETAAWDAS++NPDLRAPSSSPLLLD VVNDL CPGCSRLVAAPTSF GG++ S CGG       RG G VEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGY+AVGLGILVGTGTFFNLAGTISPVAALKQ             VHQHNRHEEAMPLLSN DQPET+ DTHSHVTEA AAFDVTASLPPAS+YAFFGVG
Sbjct:   78 RSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDEDERMRGDDIGGGPAAMMASAANRSGGRSSRLGPGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFVIGISILIATDRLSMNSGLEDGLPPAVDIQAGPAACTIETAAWDASSSNPDLRAPSSSPLLLDVVVNDLSCPGCSRLVAAPTSFGGGNVRSPCGGEGAGSRRRGRGCVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYIAVGLGILVGTGTFFNLAGTISPVAALKQ-------------VHQHNRHEEAMPLLSNFDQPETEPDTHSHVTEARAAFDVTASLPPASQYAFFGVG 439          
BLAST of mRNA_Ecto-sp13_S_contig11889.1608.1 vs. uniprot
Match: A0A835YU36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU36_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.650e-18
Identity = 87/318 (27.36%), Postives = 127/318 (39.94%), Query Frame = 0
Query:    1 MQSLLAIVGSILFWDGVYDLCDEHTWEGTLTYN------LVCASLGGAGMVWVMTSED------EDERVRGDDIGGGPAAMMVSAAKRSGGHSSRLSPGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNG--PNKDWTGLVFFVVGISILVATDRLSMNSGLEDGLPLAVGAQDGPAACTIETAAWDASNNNPDLRAPSSSPLLLDGVVNDLLCPGCSRLVAAPTSFCGGDICSQCGGGXXXXXXRGGGRVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYVAVGLGILVGTGTFFNLAGTISPVA 304
            ++S+  + G+ILFW+GV++L    T+EG L         L     GGA +++VM +ED      +DE    D + G   A              RL+       + KA  CN   VV W GVE + E     P K W  ++  +VG+ +L   DRL +N GL+D                         +   D  AP+    +  G  +  L P   R     T +C                          +      EL  VV+ WTG EW++W+      + LRD  Y   G  +L+ TGTF  LAG +SP+A
Sbjct:   45 LKSVAGMTGTILFWNGVFNL----TFEGALAVKRPLLTQLAAIVAGGAVVLYVMHTEDAAAVNHDDEAFIKDAVQGNVRAFAERPLVM------RLA------TFMKAFACNAAQVVMWWGVELLAEQYMFFP-KPWGAVLLVLVGLVVLKGVDRLDVNMGLDD------------------------DDVEEDADAPAGGMGMAQG--STYLSPRPPR-----TPWC--------------------------QTFLNGCELIAVVWLWTGCEWFIWDNYVFQHTVLRDALYTLTGFVVLLLTGTFIALAGVVSPMA 288          
BLAST of mRNA_Ecto-sp13_S_contig11889.1608.1 vs. uniprot
Match: A0A835Z909_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z909_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.700e-8
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0
Query:  246 AAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYVAVGLGILVGTGTFFNLAGTISPV 303
            A+EL  V   WTG EW++W+G    ++  RD  Y  VG  +L+ TGTF +LAGT+SP+
Sbjct:   59 ASELIAVCLIWTGCEWFIWDGFLFHETCTRDSLYALVGFAVLLCTGTFVSLAGTVSPM 116          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11889.1608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FP11_ECTSI7.300e-23486.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YU36_9STRA9.650e-1827.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z909_9STRA2.700e-846.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 279..306
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..91
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 260..278
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 140..238
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 111..121
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..139
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 307..376
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 239..259
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..110
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.554
NoneNo IPR availableTMHMMTMhelixcoord: 242..264
NoneNo IPR availableTMHMMTMhelixcoord: 277..299

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11889contigEcto-sp13_S_contig11889:231..4708 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11889.1608.1mRNA_Ecto-sp13_S_contig11889.1608.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11889 219..4708 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11889.1608.1 ID=prot_Ecto-sp13_S_contig11889.1608.1|Name=mRNA_Ecto-sp13_S_contig11889.1608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=377bp
MQSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTS
EDEDERVRGDDIGGGPAAMMVSAAKRSGGHSSRLSPGNRGRLYAKALFCN
VCGVVFWKGVEEIIEDNGPNKDWTGLVFFVVGISILVATDRLSMNSGLED
GLPLAVGAQDGPAACTIETAAWDASNNNPDLRAPSSSPLLLDGVVNDLLC
PGCSRLVAAPTSFCGGDICSQCGGGGAGSRRRGGGRVEVPRWVTTAAELT
GVVFAWTGIEWYVWEGDYIPDSALRDLGYVAVGLGILVGTGTFFNLAGTI
SPVAALKQASKRHMGDHHHSQVHQHNRHEEAMPLLSNSDQPETDTDTHSH
VTEAWAAFDVTASLPPASRYAFFGVG*
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