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Homology
BLAST of mRNA_Ecto-sp13_S_contig11889.1608.1 vs. uniprot
Match: D7FP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP11_ECTSI) HSP 1 Score: 652 bits (1682), Expect = 8.560e-234 Identity = 326/375 (86.93%), Postives = 337/375 (89.87%), Query Frame = 1
Query: 16 QSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDEDERVRGDDIGGGPAAMMVSAAKRSGGHSSRLSPGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFVVGISILVATDRLSMNSGLEDGLPLAVGAQDGPAACTIETAAWDASNNNPDLRAPSSSPLLLDGVVNDLLCPGCSRLVAAPTSFCGGDICSQCGGGXXXXXXRGGGRVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYVAVGLGILVGTGTFFNLAGTISPVAALKQASKRHMGDHHHSQVHQHNRHEEAMPLLSNSDQPETDTDTHSHVTEAWAAFDVTASLPPASRYAFFGVG 1140
+SLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDEDER+RGDDIGGGPAAMM SAA RSGG SSRL PGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFV+GISIL+ATDRLSMNSGLEDGLP AV Q GPAACTIETAAWDAS++NPDLRAPSSSPLLLD VVNDL CPGCSRLVAAPTSF GG++ S CGG RG G VEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGY+AVGLGILVGTGTFFNLAGTISPVAALKQ VHQHNRHEEAMPLLSN DQPET+ DTHSHVTEA AAFDVTASLPPAS+YAFFGVG
Sbjct: 78 RSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDEDERMRGDDIGGGPAAMMASAANRSGGRSSRLGPGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFVIGISILIATDRLSMNSGLEDGLPPAVDIQAGPAACTIETAAWDASSSNPDLRAPSSSPLLLDVVVNDLSCPGCSRLVAAPTSFGGGNVRSPCGGEGAGSRRRGRGCVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYIAVGLGILVGTGTFFNLAGTISPVAALKQ-------------VHQHNRHEEAMPLLSNFDQPETEPDTHSHVTEARAAFDVTASLPPASQYAFFGVG 439
BLAST of mRNA_Ecto-sp13_S_contig11889.1608.1 vs. uniprot
Match: A0A835YU36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU36_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 7.470e-18 Identity = 87/319 (27.27%), Postives = 128/319 (40.13%), Query Frame = 1
Query: 10 WMQSLLAIVGSILFWDGVYDLCDEHTWEGTLTYN------LVCASLGGAGMVWVMTSED------EDERVRGDDIGGGPAAMMVSAAKRSGGHSSRLSPGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNG--PNKDWTGLVFFVVGISILVATDRLSMNSGLEDGLPLAVGAQDGPAACTIETAAWDASNNNPDLRAPSSSPLLLDGVVNDLLCPGCSRLVAAPTSFCGGDICSQCGGGXXXXXXRGGGRVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYVAVGLGILVGTGTFFNLAGTISPVA 924
+++S+ + G+ILFW+GV++L T+EG L L GGA +++VM +ED +DE D + G A RL+ + KA CN VV W GVE + E P K W ++ +VG+ +L DRL +N GL+D + D AP+ + G + L P R T +C + EL VV+ WTG EW++W+ + LRD Y G +L+ TGTF LAG +SP+A
Sbjct: 44 YLKSVAGMTGTILFWNGVFNL----TFEGALAVKRPLLTQLAAIVAGGAVVLYVMHTEDAAAVNHDDEAFIKDAVQGNVRAFAERPLVM------RLA------TFMKAFACNAAQVVMWWGVELLAEQYMFFP-KPWGAVLLVLVGLVVLKGVDRLDVNMGLDD------------------------DDVEEDADAPAGGMGMAQG--STYLSPRPPR-----TPWC--------------------------QTFLNGCELIAVVWLWTGCEWFIWDNYVFQHTVLRDALYTLTGFVVLLLTGTFIALAGVVSPMA 288
BLAST of mRNA_Ecto-sp13_S_contig11889.1608.1 vs. uniprot
Match: A0A835Z909_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z909_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 2.750e-8 Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 748 AAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYVAVGLGILVGTGTFFNLAGTISPV 921
A+EL V WTG EW++W+G ++ RD Y VG +L+ TGTF +LAGT+SP+
Sbjct: 59 ASELIAVCLIWTGCEWFIWDGFLFHETCTRDSLYALVGFAVLLCTGTFVSLAGTVSPM 116
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1143 |
| Hectar predicted targeting category | signal peptide |
| Exons | 7 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-05_001820.1 |
| Cds size | 1131 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462627.5389907-UTR-Ecto-sp13_S_contig11889:218..230 | 1681462627.5389907-UTR-Ecto-sp13_S_contig11889:218..230 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig11889 219..230 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462627.5474663-CDS-Ecto-sp13_S_contig11889:230..322 | 1681462627.5474663-CDS-Ecto-sp13_S_contig11889:230..322 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11889 231..322 + |
| 1681462627.555462-CDS-Ecto-sp13_S_contig11889:926..1054 | 1681462627.555462-CDS-Ecto-sp13_S_contig11889:926..1054 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11889 927..1054 + |
| 1681462627.5634418-CDS-Ecto-sp13_S_contig11889:1371..1487 | 1681462627.5634418-CDS-Ecto-sp13_S_contig11889:1371..1487 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11889 1372..1487 + |
| 1681462627.5713475-CDS-Ecto-sp13_S_contig11889:2402..2520 | 1681462627.5713475-CDS-Ecto-sp13_S_contig11889:2402..2520 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11889 2403..2520 + |
| 1681462627.579231-CDS-Ecto-sp13_S_contig11889:2789..3117 | 1681462627.579231-CDS-Ecto-sp13_S_contig11889:2789..3117 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11889 2790..3117 + |
| 1681462627.5871189-CDS-Ecto-sp13_S_contig11889:3677..3855 | 1681462627.5871189-CDS-Ecto-sp13_S_contig11889:3677..3855 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11889 3678..3855 + |
| 1681462627.5949893-CDS-Ecto-sp13_S_contig11889:4537..4708 | 1681462627.5949893-CDS-Ecto-sp13_S_contig11889:4537..4708 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11889 4538..4708 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11889.1608.1 >prot_Ecto-sp13_S_contig11889.1608.1 ID=prot_Ecto-sp13_S_contig11889.1608.1|Name=mRNA_Ecto-sp13_S_contig11889.1608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=377bp
MQSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTS EDEDERVRGDDIGGGPAAMMVSAAKRSGGHSSRLSPGNRGRLYAKALFCN VCGVVFWKGVEEIIEDNGPNKDWTGLVFFVVGISILVATDRLSMNSGLED GLPLAVGAQDGPAACTIETAAWDASNNNPDLRAPSSSPLLLDGVVNDLLC PGCSRLVAAPTSFCGGDICSQCGGGGAGSRRRGGGRVEVPRWVTTAAELT GVVFAWTGIEWYVWEGDYIPDSALRDLGYVAVGLGILVGTGTFFNLAGTI SPVAALKQASKRHMGDHHHSQVHQHNRHEEAMPLLSNSDQPETDTDTHSH VTEAWAAFDVTASLPPASRYAFFGVG* back to topmRNA from alignment at Ecto-sp13_S_contig11889:219..4708+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig11889.1608.1 ID=mRNA_Ecto-sp13_S_contig11889.1608.1|Name=mRNA_Ecto-sp13_S_contig11889.1608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4490bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11889:219..4708+ (Ectocarpus species13 EcNAP12_S_4_19m) GCTTGTCTCTGGATGCAGAGCCTCCTAGCGATCGTGGGGTCGATCCTCTT
TTGGGACGGCGTTTACGATCTCTGCGACGAGCACACCTGGGAAGGAACTC
TGACGTGAGTGCCAAGAGACCCGCCCGCCAGCGTTCCTGTTGATTGCGTC
GGTGGCGTCGTAGGCGTCGTCGTCGCCTAAACCTGTGCTGTTGGCTGTTG
TCGGCTACGGTATGTGCCCCCCCCCCCCCTCCCCCCCCAATATATTGCTG
ATTCTCCCGGGACTAGGCCTTTTACACCGATAGTGTCGCGATCCCCCTGT
TGGTACGAGGCGGCAAAGAGTACACATGACACGGATTGAGATATCGAGTT
AAACGAAAGACCGTGCATCTGCTACCTCTGCAGGGTGTATAGAAGCGTTA
GTTTGTGTTCTTCCGTGCGATGAAAGGTTGATATTTTGAAGCATGCAGCA
TAGCTCGGCCGTTTCACTTTGCTCGGAAAAAGCCGGGGGGGAGATCGTCG
TGACCATCAAGAGCCTGTGTCGAGCACCGTTTGCGTTGCCGTTCGTCTCC
CCTTGGTCGGATGGCAACCTCCAACAAAGCGGGGAACGGAACAGGTCGTG
CCGAACTCGCACGTGATTGGCCACACAACCACGGTCCAGGCCAGAGACCA
CCGCTTGTGCGGTGTCGTTACTCACGGAATGTGTTTCCCGCCGATGAACT
CAAATCAGGTACAACTTGGTCTGCGCTTCACTCGGCGGTGCCGGCATGGT
TTGGGTCATGACCAGCGAAGACGAGGACGAGCGCGTTCGCGGGGACGATA
TCGGTGGCGGGCCCGCTGCGATGATGGTGTCTGCAGGTTAAGCACGGTCT
TGCAACAAGAAGGGTAGATCAAGCAAGTCTGGGCGGCTAGAACACCCCGC
GGGAGCACGTTAACAAGGAAGCATAAAGTGGTCGTCGCAAGCGGCAGGGT
TAGAGAACGAATTCCGTCCATCCTCTCCCTTTCTCATTTCTTCTCTCTCT
GTCGTTTTCGCCATTTTTCTCTCTCCTTTCTCGCCCCATCTCTTTTGTTT
TGCATCTGTTACGCTTGCTTCTTGTTGGTTGGTCTTGGTGGCACACACAC
GTCTAACGCCTCCACACAACAATCGCTTGGGGTTCTTGCTTTGTGTCGGG
AAGCAAAACGGTCCGGCGGGCACTCGTCCAGGCTCAGCCCGGGCAACAGG
GGCAGGCTTTACGCGAAGGCGCTGTTCTGCAACGTGTGCGGTGTCGTATT
CTGGAAGGGCGTCGAAGAAGTGAGTCCTCTCGTTCGACGGCTTGTGGTCG
TCGGTGTTGTTGTTGATGATGGTGGTGGTGGTCCTCCTGTTGCCTCGTCC
ATGTAGCTGTTGCTTGTGTTGCCGGTGCCGGCGAATTTGTTTCTCGCCTG
ACTTGCTGCAGTGTCTTGACCAAGCTTCTCACAATACCGAGTCTGCGGCA
CCTCACAAGAATATCGGAGCAGTTACTTCGTTTGAAATGCCCAAAGTATC
GGCAAGGTGCACATCAACCAGAAGACTTGTATCTTAAGACAGTGTGTCGA
ATGGAACGGCCGGAGAGTGTCTGGGGGATGCTTTGCCTTTGTCTGCGTCA
CGAGCTTGGACGAAGGCCGGAAACTGATGGCATGGAGCATTCTGAAATGG
AAGTCACCCGTCCGGGTTTGACGCACTGCTGCAACGGGTAGCTATGCATA
CATAGCAAGATTTCAAAACACGTTAGAGTTGTAGGTGTTCCCTGGGCTCC
AAGTGACACAAGCTCACTGCGTCAATTTGTAAGGAATGTGCCACAAAAGA
TTTATTGGCTTTGCCGATCCCGGATCGGGCTTTCTTCCGCAGGTTGAGGC
AAGGAGACGGTGCAGCGGGTCGGATATGATCCAGTCGAGGCGGTTTACCG
ACCATTTGAAACGGTTTTCGACCGTTCGAAACGTTTTTTCAACGTTCGAA
ATGGTTTTTCAACGCGGATGACGGAACAGTACATGGCGTAATGCGTAGCC
CGCTAGATGTGAACCCCAATCTGGAGCGGCTTGCACTTCGTTCCGGCTGG
AGCAACTAAGACATTCAGGCAGCTTTCACACTGCATTTTTATGAACACAA
TTTTTGTGTCAAGCTTTGGATTAAGCCAAGCCATGGGTCGAGTGAGTCGA
TACCAAAACTCGACATGACTGTATCCGTTTGCAGATCATCGAAGACAACG
GGCCGAACAAGGACTGGACCGGGCTTGTGTTCTTCGTGGTCGGGATCTCG
ATCCTCGTCGCCACCGACAGGCTGTCCATGAACAGCGGGCTTGAAGATGG
CTGTGAGTCGATGTTGCGGTACATGTATGTCTTATTTTCTGCTGGTGCTC
TGGTGCTGGTGTTGCTTTGAGTTGTTCTCGTATATACCCAGACTGTCCCA
CACCCTGACAGGTGAAGGCCCCTCACATGTATGTACTGTAGGTTGTGAAG
TGAGAGGGGTTGCAACGTCCGAGCCCGAAATCGGAGGGAATGCACCAAAC
GACCAGATACCCCCGCCCCCAAGGTTGCCAGAGTAATCGTACACCATCCT
GATGAATGTTCTGTTCTGCAGTGCCCCTCGCGGTGGGTGCTCAGGATGGC
CCGGCCGCCTGCACGATAGAGACCGCGGCTTGGGACGCGAGCAACAATAA
CCCCGATCTCAGGGCGCCGTCATCATCGCCGCTGTTGCTAGACGGCGTCG
TCAACGACCTCTTGTGCCCTGGGTGTAGTCGGCTGGTAGCCGCCCCGACG
TCCTTTTGCGGCGGCGATATTTGCAGCCAGTGCGGGGGGGGAGGAGCGGG
GTCGAGGCGAAGGGGAGGAGGCCGCGTTGAAGTCCCGCGGTGGGTCACCA
CGGCGGCGGAGCTCACTGGAGTGGTGTTTGCGTGGACGGGGATAGAGTGG
TGAGGACTCGTGCAGGTGGTCCGCTTGGACGGGGGTGGTGTTGGCGATGA
CATGTAAAGATTTTCGTTTCTTTGAAAATTACACTTTCTCCTAGGTTAGC
TACTGGTCGTGGTGCCACCCACGGTCAACCATTGCATGCAAAGCATAAAT
TATGCGTACACAGGGACAACATTTTTTTTTTGCATTTGGCGTCGACGGAA
ATTTGACATGTCCCCAGTCTGTCGGCCCGCAGCACTCGCGGAAGACACGT
GGAACAAGGTGCGTCCGTGTCGCTTCCCCGCTTCGGCCCTCTCCCGGGTG
TGCGTAGCGTCCAGGTACGATCTTGGAGATCTTGAAGCGGACGACACTTG
CACCATGTCCCTGCTAGTTTCGTTTTCATCGTGACGTTTTTCGTCGTTCT
GGTCCAAGTACGGCTCTACTCCCTGAGAGGAGCACCTGGCGGGGGTCAAC
TCGATCAGCAACAGCGGTGATACGGTGATGCCCTTTCTCCCGAGTGATGC
GTAGTCCGTGGCAAATGATGCGGAGTACCCCCTCGCCGTGTCTGCGTCGA
AATGTGTAGGTACGTGTGGGAGGGAGACTACATACCCGACAGCGCGCTTC
GGGATCTTGGGTATGTTGCGGTGGGCCTTGGGATTCTGGTCGGCACCGGG
ACCTTCTTCAACCTGGCGGGCACGATAAGCCCCGTCGCCGCCCTCAAGCA
GGCAAGCAAGCGGCACATGGGGGATCATCATCACAGCGTCTCCTTTGCTG
CTCTACGGTAGTATCGCACTTTTGTTGTTCTTCTTCGTCATATGACTGTT
TGACCGGAGTCCCCGAGACACGCGGGAACCGGTAGGTTTCGGGAGAAAGC
ACCTCGACCTCAACGGTACTCTTGCCAGCGCCTAGCAGTGCTCAGGTGTA
TTATGGTAGTGGCTCATTCAATGGATGGTGTACTCGCGAACCAAACCCGA
AACCCAGATCTACACTCGATCCCTTTGCGGAGCCCATGATCCGAAATCTC
AAGGCGACAGAACCGGAACGCTCGTGGTTGTGTTCAGGCCATCGCAACCG
ACAGATGACATTGAACGGAGGGTTGACACCCGGCGTGATGTCCAATATTT
ATTTTGTTTGGAGGAACTAGCAGGCGTGTGATGTCTGCGATGCTTCTAGG
AGCAACCAAATGCGAGCTCTCTTCGGCACGGCATGGCGGTCCTGTTTTAT
CACAGGCGCCCTCTCTCTCTCGTTCTCCCTGTCGTTATCCCTTAGGGTTA
TTACATTTCTCTGACGGATTTTGCGAGAAAATACCGGCAGAAAAATTGAG
ATTTCCATGTAATTGACAAGTGCGTGCGCGCATGGGCATATGGTTGAAAA
CAGAAAGCAAAGGTGACCCCCCCCCGCGCGCCTTCCCTTCATCCTGCCTT
ACGTTTTGCCGTGTGAGAGCAGGTGCATCAGCACAACCGACACGAGGAGG
CGATGCCGCTTTTGTCCAACTCCGACCAGCCTGAGACCGATACAGATACC
CATAGCCATGTCACTGAAGCCTGGGCGGCGTTCGATGTTACCGCCTCTCT
TCCCCCAGCATCTCGGTATGCGTTCTTCGGGGTCGGCTGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig11889:219..4708+ >mRNA_Ecto-sp13_S_contig11889.1608.1 ID=mRNA_Ecto-sp13_S_contig11889.1608.1|Name=mRNA_Ecto-sp13_S_contig11889.1608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1131bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11889:219..4708+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGCAGAGCCTCCTAGCGATCGTGGGGTCGATCCTCTTTTGGGACGGCGT TTACGATCTCTGCGACGAGCACACCTGGGAAGGAACTCTGACGTACAACT TGGTCTGCGCTTCACTCGGCGGTGCCGGCATGGTTTGGGTCATGACCAGC GAAGACGAGGACGAGCGCGTTCGCGGGGACGATATCGGTGGCGGGCCCGC TGCGATGATGGTGTCTGCAGCAAAACGGTCCGGCGGGCACTCGTCCAGGC TCAGCCCGGGCAACAGGGGCAGGCTTTACGCGAAGGCGCTGTTCTGCAAC GTGTGCGGTGTCGTATTCTGGAAGGGCGTCGAAGAAATCATCGAAGACAA CGGGCCGAACAAGGACTGGACCGGGCTTGTGTTCTTCGTGGTCGGGATCT CGATCCTCGTCGCCACCGACAGGCTGTCCATGAACAGCGGGCTTGAAGAT GGCTTGCCCCTCGCGGTGGGTGCTCAGGATGGCCCGGCCGCCTGCACGAT AGAGACCGCGGCTTGGGACGCGAGCAACAATAACCCCGATCTCAGGGCGC CGTCATCATCGCCGCTGTTGCTAGACGGCGTCGTCAACGACCTCTTGTGC CCTGGGTGTAGTCGGCTGGTAGCCGCCCCGACGTCCTTTTGCGGCGGCGA TATTTGCAGCCAGTGCGGGGGGGGAGGAGCGGGGTCGAGGCGAAGGGGAG GAGGCCGCGTTGAAGTCCCGCGGTGGGTCACCACGGCGGCGGAGCTCACT GGAGTGGTGTTTGCGTGGACGGGGATAGAGTGGTACGTGTGGGAGGGAGA CTACATACCCGACAGCGCGCTTCGGGATCTTGGGTATGTTGCGGTGGGCC TTGGGATTCTGGTCGGCACCGGGACCTTCTTCAACCTGGCGGGCACGATA AGCCCCGTCGCCGCCCTCAAGCAGGCAAGCAAGCGGCACATGGGGGATCA TCATCACAGCCAGGTGCATCAGCACAACCGACACGAGGAGGCGATGCCGC TTTTGTCCAACTCCGACCAGCCTGAGACCGATACAGATACCCATAGCCAT GTCACTGAAGCCTGGGCGGCGTTCGATGTTACCGCCTCTCTTCCCCCAGC ATCTCGGTATGCGTTCTTCGGGGTCGGCTGA back to top
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