prot_Ecto-sp13_S_contig11860.1594.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11860.1594.1
Unique Nameprot_Ecto-sp13_S_contig11860.1594.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length978
Homology
BLAST of mRNA_Ecto-sp13_S_contig11860.1594.1 vs. uniprot
Match: A0A6H5L4X5_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X5_9PHAE)

HSP 1 Score: 1114 bits (2881), Expect = 0.000e+0
Identity = 784/1009 (77.70%), Postives = 806/1009 (79.88%), Query Frame = 0
Query:    1 MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKVRLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAAELPPQSPLVNHQKVSGTGQRGSRRKVIYGGAVGTVGATPRQREHAPTRHPFFGRQNSIESDRRVTVGNPQSSKALLEGQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PCPSPPMMQRLSYPGGGRSRQGSKSGSSGGNDTKRPSPVTKSPSEKXXXXXXXXXXXXXXXXXXXSRARRRTHNLTKGGRAYGSLSPTPAPPAAEEVKRRRAGSGPVRRESAPLYPAALEKTKRLAA--------DASRRGPPPPYSSVAHRAESARKLPPSTSPNDGTAXXXXXXXXXXTADVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQLLAPENRAGGGQSAGEHESTEGKGDEAPRESQLENEKLQVSRSGGGGEAEIDALEVPKDAEGGGMQAARQGEEEXXXXXXXXX-----PTPEPRAGDDAQARDAHEAPEWIVPPPVAKDRSQDSAAGSPRAGEDSSVVPVQPALTKGPEHDLSKDTAADSMSDRGXXXXXXXXXXXXXXXXXXXXSPRPRGEDSSVVPVPPALTKGSEHEMSQDSAAGSVLGRESGTA-----AAGSSRXXXXXXXQPREDNLVPARAAMAKGSAGTASQDSAAGSMSGQEGDAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGASGLADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLVLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQSSPLKSAFRFRKPSAALEHDYEGPERTPPSAA--TLRGGAGRKLSAPLLSRTFSALSSAASHASPG--SASRTTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYRERAG-------DVGLLPPASKAYFGRPSGFSVHVLVASVLSAADLGDRQQQHLE 978
            MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPK+RLKLCARCRAVAYCGMECQKAGWKVHREVC+HYASA+ELPPQSP VNHQKVSGTGQRGSRR V YGGAVG+VGATPRQREHAPTRHPFFGRQNSIESDRR TVGN QSSKAL EG+RQ   XXXXXXXXXXXXXXXXXXXXXXXXXXX       PCPSPP MQRLSYPG GRS QGSKSGSSGGND KRPSPV KSPSEKXXXXXXXXXXXXXXXXXX SRARRRTHNLTKGGRAYGSLSPTPAPPAAEEVKRRRAGSGP+RRESAPLYPAALEKTKRLAA        D SRRGP                            XXXXXXXXXXTA+VRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQ LAPEN+AGG Q AGEHEST GKG +APRESQLENEK QVSR GGGGE EIDALEV KD EGGG+Q AR+GEE XXXXXXXXX     PTPE RAGDDA+ARD H APEW+VPPPVAKDRSQDSAAGSPRA ED                                                          D+ VVPV P LT G  HE+SQD AAGSVLGRE   A     AAGS  XXXXXX +PREDNLVP+R A                 MSGQEGDAAV   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ASG+ADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPL+LAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQ+SPLKSAFRFRKPSAA EHD EGPERT PS+A  TL GGA + LSAPLLSRT SALSSAASHAS G   AS TTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFY ERAG       DVGLLPPASKAYFGRPSGFSVHVLVAS LSAADLGDR QQHLE
Sbjct:    1 MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKIRLKLCARCRAVAYCGMECQKAGWKVHREVCMHYASASELPPQSPSVNHQKVSGTGQRGSRRIVTYGGAVGSVGATPRQREHAPTRHPFFGRQNSIESDRRATVGNLQSSKALREGERQQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXQPASEEEPCPSPPTMQRLSYPGRGRSWQGSKSGSSGGNDAKRPSPVGKSPSEKXXXXXXXXXXXXXXXXXXASRARRRTHNLTKGGRAYGSLSPTPAPPAAEEVKRRRAGSGPIRRESAPLYPAALEKTKRLAARKDASLAADVSRRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQQLAPENKAGGDQPAGEHESTAGKGVKAPRESQLENEKPQVSRFGGGGEGEIDALEVAKDGEGGGVQVAREGEEXXXXXXXXXXXXXXEPTPESRAGDDARARDTHGAPEWVVPPPVAKDRSQDSAAGSPRARED----------------------------------------------------------DNEVVPVQPVLTTGPAHEVSQDLAAGSVLGREGDAALAKDSAAGSXXXXXXXXPRPREDNLVPSRPAXXXXXXXXXXXXXXXXXMSGQEGDAAVVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLMLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQASPLKSAFRFRKPSAASEHDDEGPERTLPSSASATLGGGARKILSAPLLSRTLSALSSAASHASHGLAKASPTTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYLERAGAAPAPAGDVGLLPPASKAYFGRPSGFSVHVLVASALSAADLGDRHQQHLE 951          
BLAST of mRNA_Ecto-sp13_S_contig11860.1594.1 vs. uniprot
Match: D7FI04_ECTSI (MYND-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI04_ECTSI)

HSP 1 Score: 1040 bits (2688), Expect = 0.000e+0
Identity = 723/1058 (68.34%), Postives = 735/1058 (69.47%), Query Frame = 0
Query:    1 MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKVRLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAAELPPQSPLVNHQKVSGTGQRGSRRKVIYGGAVGTVGATPRQREHAPTRHPFFGRQNSIESDRRVTVGNPQSSKALLEGQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCPSPPMMQRLSYPGGGRSRQGSKSGSSGGNDTKRPSPVTKSPSEKXXXXXXXXXXXXXXXXXXXSRARRRTHNLTKGGRAYGSLSPTPAPPAAEEVKRRRAGSGPVRRESAPLYPAALEKTKRLAA--------DASRRGPPPPYSSVAHRAESARKLPPSTSPNDGTAXXXXXXXXXXTADVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQLLAPENRAGGGQSAGEHESTEGKGDEAPRESQLENEKLQVSRSGGGGEAEIDALEVPKDAEGGGMQAARQGEEEXXXXXXXXXPTPE--PRAGDDAQARDAHEAPEWIVPPPVAKDRSQDSAAGSPRA-----------------------------------------------------------GEDSSVVPVQPALTKGPEHDLSKDTAADSMSDRGXXXXXXXXXXXXXXXXXXXXSPRPRGEDSSVVPVPPALTKGSEHEMSQDSAAGSVLGRESGTAAAGSSRXXXXXXXQPREDNLVPARAAMAKGSAGTASQDSAAGSMSGQEGDAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGASGLADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLVLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQSSPLKSAFRFRKPSAALEHDYEGPERTPPSAATLRGGAGRKLSAPLLSRTFSALSSAASHASPGSASR----TTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYRERA-------GDVGLLPPASKAYFGRPSGFSVHVLVASVLSAADLGDRQQQHLE 978
            MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPK+RLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAAELP QSPLVNHQKVSGTGQRGS                                                                                                                SRQGSKSG+ GGND KRPSPV KSPSEK   XXXXXXXXXXXXXXXX  ARRRTHNLTKGGRAYGSLSPTP PP AEEVKRRR+GSGPVRRESAPLYPA LEKTKRLAA        DASRRGP                            XXXXXXXXXXTADVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQ LAPEN+AGG Q AGEHEST GKG EAPRESQLENEK QVSRSGGGGEAEIDALEVPK                XXXXXXXXX      PRAGDDAQARDA  APEW+VP PVAKDRSQDSAAGSPRA                                                           GEDSSVV VQPALTKG EHDLSKD+A+ S+SDR                     SPRPR EDSSVVPV PALTKGSEHE SQDSAAGSVL RE GTAAAGSS XXXXXXX    DN+VPAR AMAKGSAGT SQDSAAGSMSGQEGDAA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  TGAS LADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLVLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQSSPLKSAFRFRKPSAA+EHD EGPE TPPSAATL GG+GRKLSAP LSRTFSALSSAASHASPGSASR    TTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYRERA       GD+GLLPPASKAYFGRPSGFSVHVLVAS LSAADLGDRQQQHLE
Sbjct:    1 MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKIRLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAAELPSQSPLVNHQKVSGTGQRGS----------------------------------------------------------------------------------------------------------------SRQGSKSGNIGGNDAKRPSPVGKSPSEKQQPXXXXXXXXXXXXXXXXXXARRRTHNLTKGGRAYGSLSPTPPPPDAEEVKRRRSGSGPVRRESAPLYPAVLEKTKRLAARKDASLTADASRRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTADVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQQLAPENKAGGDQPAGEHESTAGKGVEAPRESQLENEKPQVSRSGGGGEAEIDALEVPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAGDDAQARDARGAPEWVVPSPVAKDRSQDSAAGSPRAREDDNGVVPVQPALTKGSAHEVSQDLAAGSVLGREGDPALAKDSAAGSSXXXXXXXPRAGEDSSVVTVQPALTKGSEHDLSKDSASVSVSDRDGDADLANDSAAGWSRDSAAGSPRPREEDSSVVPVQPALTKGSEHETSQDSAAGSVLSREGGTAAAGSSXXXXXXXXXXXXDNVVPARPAMAKGSAGTVSQDSAAGSMSGQEGDAAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVPLPMEPPPPIQTSSKTGASSLADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLVLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQSSPLKSAFRFRKPSAAVEHDDEGPEITPPSAATLGGGSGRKLSAPPLSRTFSALSSAASHASPGSASRSASRTTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYRERANAAPAPAGDIGLLPPASKAYFGRPSGFSVHVLVASALSAADLGDRQQQHLE 946          
BLAST of mRNA_Ecto-sp13_S_contig11860.1594.1 vs. uniprot
Match: A0A150FVH8_GONPE (MYND-type domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FVH8_GONPE)

HSP 1 Score: 55.1 bits (131), Expect = 6.970e-5
Identity = 27/59 (45.76%), Postives = 31/59 (52.54%), Query Frame = 0
Query:   23 PRCDSCGKRDGEDAGGEGQPKVRLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAA 81
            PRC + G+    D G        LK CA CRAV YCG ECQ+A W  HR  C    +AA
Sbjct:  115 PRCSNFGRAAEADLG--------LKQCAGCRAVRYCGAECQRAHWPEHRPACAEVKAAA 165          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11860.1594.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4X5_9PHAE0.000e+077.70MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FI04_ECTSI0.000e+068.34MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A150FVH8_GONPE6.970e-545.76MYND-type domain-containing protein n=1 Tax=Gonium... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 154..185
NoneNo IPR availableGENE3D3.30.60.180coord: 15..76
e-value: 1.2E-11
score: 46.2
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 21..78
IPR002893Zinc finger, MYND-typePFAMPF01753zf-MYNDcoord: 25..74
e-value: 1.8E-9
score: 37.6
IPR002893Zinc finger, MYND-typePROSITEPS50865ZF_MYND_2coord: 25..74
score: 11.568

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11860contigEcto-sp13_S_contig11860:3..3298 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11860.1594.1mRNA_Ecto-sp13_S_contig11860.1594.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11860 3..3298 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11860.1594.1 ID=prot_Ecto-sp13_S_contig11860.1594.1|Name=mRNA_Ecto-sp13_S_contig11860.1594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=978bp
MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKVRLKLCA
RCRAVAYCGMECQKAGWKVHREVCVHYASAAELPPQSPLVNHQKVSGTGQ
RGSRRKVIYGGAVGTVGATPRQREHAPTRHPFFGRQNSIESDRRVTVGNP
QSSKALLEGQRQQQRQQQQQQQQQQQQKQSEARRRSPQTTQPASEEEPCP
SPPMMQRLSYPGGGRSRQGSKSGSSGGNDTKRPSPVTKSPSEKPQPRQSP
GAAVAAAVKMAASRARRRTHNLTKGGRAYGSLSPTPAPPAAEEVKRRRAG
SGPVRRESAPLYPAALEKTKRLAADASRRGPPPPYSSVAHRAESARKLPP
STSPNDGTATAAPPRRSSSTADVRQTTRIPPPLPPRPSVSLDANTAFPRG
SSLSPGLAGGTSTGSPQLLAPENRAGGGQSAGEHESTEGKGDEAPRESQL
ENEKLQVSRSGGGGEAEIDALEVPKDAEGGGMQAARQGEEEEEEEEDTEE
PTPEPRAGDDAQARDAHEAPEWIVPPPVAKDRSQDSAAGSPRAGEDSSVV
PVQPALTKGPEHDLSKDTAADSMSDRGGDAGLAKDSAAGWSRDSAAGSPR
PRGEDSSVVPVPPALTKGSEHEMSQDSAAGSVLGRESGTAAAGSSRDSAA
GSPQPREDNLVPARAAMAKGSAGTASQDSAAGSMSGQEGDAAVVPVRPSL
APCSVDSLSQDSAAGSTTAHETHQAPAVPLPMEPPPPIQTSSKTGASGLA
DTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLVLAAREKASAAV
AAWQKDRRNSPRPRPPVSPGPAALSQSSPLKSAFRFRKPSAALEHDYEGP
ERTPPSAATLRGGAGRKLSAPLLSRTFSALSSAASHASPGSASRTTRPPF
VPTIELSPRASLPASPHAPGPRITDTAKFYRERAGDVGLLPPASKAYFGR
PSGFSVHVLVASVLSAADLGDRQQQHLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND