mRNA_Ecto-sp13_S_contig11860.1594.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11860.1594.1 vs. uniprot
Match: A0A6H5L4X5_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X5_9PHAE) HSP 1 Score: 1114 bits (2881), Expect = 0.000e+0 Identity = 784/1009 (77.70%), Postives = 806/1009 (79.88%), Query Frame = 1
Query: 1 MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKVRLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAAELPPQSPLVNHQKVSGTGQRGSRRKVIYGGAVGTVGATPRQREHAPTRHPFFGRQNSIESDRRVTVGNPQSSKALLEGQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PCPSPPMMQRLSYPGGGRSRQGSKSGSSGGNDTKRPSPVTKSPSEKXXXXXXXXXXXXXXXXXXXSRARRRTHNLTKGGRAYGSLSPTPAPPAAEEVKRRRAGSGPVRRESAPLYPAALEKTKRLAA--------DASRRGPPPPYSSVAHRAESARKLPPSTSPNDGTAXXXXXXXXXXTADVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQLLAPENRAGGGQSAGEHESTEGKGDEAPRESQLENEKLQVSRSGGGGEAEIDALEVPKDAEGGGMQAARQGEEEXXXXXXXXX-----PTPEPRAGDDAQARDAHEAPEWIVPPPVAKDRSQDSAAGSPRAGEDSSVVPVQPALTKGPEHDLSKDTAADSMSDRGXXXXXXXXXXXXXXXXXXXXSPRPRGEDSSVVPVPPALTKGSEHEMSQDSAAGSVLGRESGTA-----AAGSSRXXXXXXXQPREDNLVPARAAMAKGSAGTASQDSAAGSMSGQEGDAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGASGLADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLVLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQSSPLKSAFRFRKPSAALEHDYEGPERTPPSAA--TLRGGAGRKLSAPLLSRTFSALSSAASHASPG--SASRTTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYRERAG-------DVGLLPPASKAYFGRPSGFSVHVLVASVLSAADLGDRQQQHLE 2934
MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPK+RLKLCARCRAVAYCGMECQKAGWKVHREVC+HYASA+ELPPQSP VNHQKVSGTGQRGSRR V YGGAVG+VGATPRQREHAPTRHPFFGRQNSIESDRR TVGN QSSKAL EG+RQ XXXXXXXXXXXXXXXXXXXXXXXXXXX PCPSPP MQRLSYPG GRS QGSKSGSSGGND KRPSPV KSPSEKXXXXXXXXXXXXXXXXXX SRARRRTHNLTKGGRAYGSLSPTPAPPAAEEVKRRRAGSGP+RRESAPLYPAALEKTKRLAA D SRRGP XXXXXXXXXXTA+VRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQ LAPEN+AGG Q AGEHEST GKG +APRESQLENEK QVSR GGGGE EIDALEV KD EGGG+Q AR+GEE XXXXXXXXX PTPE RAGDDA+ARD H APEW+VPPPVAKDRSQDSAAGSPRA ED D+ VVPV P LT G HE+SQD AAGSVLGRE A AAGS XXXXXX +PREDNLVP+R A MSGQEGDAAV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ASG+ADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPL+LAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQ+SPLKSAFRFRKPSAA EHD EGPERT PS+A TL GGA + LSAPLLSRT SALSSAASHAS G AS TTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFY ERAG DVGLLPPASKAYFGRPSGFSVHVLVAS LSAADLGDR QQHLE
Sbjct: 1 MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKIRLKLCARCRAVAYCGMECQKAGWKVHREVCMHYASASELPPQSPSVNHQKVSGTGQRGSRRIVTYGGAVGSVGATPRQREHAPTRHPFFGRQNSIESDRRATVGNLQSSKALREGERQQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXQPASEEEPCPSPPTMQRLSYPGRGRSWQGSKSGSSGGNDAKRPSPVGKSPSEKXXXXXXXXXXXXXXXXXXASRARRRTHNLTKGGRAYGSLSPTPAPPAAEEVKRRRAGSGPIRRESAPLYPAALEKTKRLAARKDASLAADVSRRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQQLAPENKAGGDQPAGEHESTAGKGVKAPRESQLENEKPQVSRFGGGGEGEIDALEVAKDGEGGGVQVAREGEEXXXXXXXXXXXXXXEPTPESRAGDDARARDTHGAPEWVVPPPVAKDRSQDSAAGSPRARED----------------------------------------------------------DNEVVPVQPVLTTGPAHEVSQDLAAGSVLGREGDAALAKDSAAGSXXXXXXXXPRPREDNLVPSRPAXXXXXXXXXXXXXXXXXMSGQEGDAAVVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLMLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQASPLKSAFRFRKPSAASEHDDEGPERTLPSSASATLGGGARKILSAPLLSRTLSALSSAASHASHGLAKASPTTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYLERAGAAPAPAGDVGLLPPASKAYFGRPSGFSVHVLVASALSAADLGDRHQQHLE 951
BLAST of mRNA_Ecto-sp13_S_contig11860.1594.1 vs. uniprot
Match: D7FI04_ECTSI (MYND-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI04_ECTSI) HSP 1 Score: 1040 bits (2688), Expect = 0.000e+0 Identity = 723/1058 (68.34%), Postives = 735/1058 (69.47%), Query Frame = 1
Query: 1 MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKVRLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAAELPPQSPLVNHQKVSGTGQRGSRRKVIYGGAVGTVGATPRQREHAPTRHPFFGRQNSIESDRRVTVGNPQSSKALLEGQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPCPSPPMMQRLSYPGGGRSRQGSKSGSSGGNDTKRPSPVTKSPSEKXXXXXXXXXXXXXXXXXXXSRARRRTHNLTKGGRAYGSLSPTPAPPAAEEVKRRRAGSGPVRRESAPLYPAALEKTKRLAA--------DASRRGPPPPYSSVAHRAESARKLPPSTSPNDGTAXXXXXXXXXXTADVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQLLAPENRAGGGQSAGEHESTEGKGDEAPRESQLENEKLQVSRSGGGGEAEIDALEVPKDAEGGGMQAARQGEEEXXXXXXXXXPTPE--PRAGDDAQARDAHEAPEWIVPPPVAKDRSQDSAAGSPRA-----------------------------------------------------------GEDSSVVPVQPALTKGPEHDLSKDTAADSMSDRGXXXXXXXXXXXXXXXXXXXXSPRPRGEDSSVVPVPPALTKGSEHEMSQDSAAGSVLGRESGTAAAGSSRXXXXXXXQPREDNLVPARAAMAKGSAGTASQDSAAGSMSGQEGDAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGASGLADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLVLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQSSPLKSAFRFRKPSAALEHDYEGPERTPPSAATLRGGAGRKLSAPLLSRTFSALSSAASHASPGSASR----TTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYRERA-------GDVGLLPPASKAYFGRPSGFSVHVLVASVLSAADLGDRQQQHLE 2934
MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPK+RLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAAELP QSPLVNHQKVSGTGQRGS SRQGSKSG+ GGND KRPSPV KSPSEK XXXXXXXXXXXXXXXX ARRRTHNLTKGGRAYGSLSPTP PP AEEVKRRR+GSGPVRRESAPLYPA LEKTKRLAA DASRRGP XXXXXXXXXXTADVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQ LAPEN+AGG Q AGEHEST GKG EAPRESQLENEK QVSRSGGGGEAEIDALEVPK XXXXXXXXX PRAGDDAQARDA APEW+VP PVAKDRSQDSAAGSPRA GEDSSVV VQPALTKG EHDLSKD+A+ S+SDR SPRPR EDSSVVPV PALTKGSEHE SQDSAAGSVL RE GTAAAGSS XXXXXXX DN+VPAR AMAKGSAGT SQDSAAGSMSGQEGDAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TGAS LADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLVLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQSSPLKSAFRFRKPSAA+EHD EGPE TPPSAATL GG+GRKLSAP LSRTFSALSSAASHASPGSASR TTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYRERA GD+GLLPPASKAYFGRPSGFSVHVLVAS LSAADLGDRQQQHLE
Sbjct: 1 MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKIRLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAAELPSQSPLVNHQKVSGTGQRGS----------------------------------------------------------------------------------------------------------------SRQGSKSGNIGGNDAKRPSPVGKSPSEKQQPXXXXXXXXXXXXXXXXXXARRRTHNLTKGGRAYGSLSPTPPPPDAEEVKRRRSGSGPVRRESAPLYPAVLEKTKRLAARKDASLTADASRRGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTADVRQTTRIPPPLPPRPSVSLDANTAFPRGSSLSPGLAGGTSTGSPQQLAPENKAGGDQPAGEHESTAGKGVEAPRESQLENEKPQVSRSGGGGEAEIDALEVPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAGDDAQARDARGAPEWVVPSPVAKDRSQDSAAGSPRAREDDNGVVPVQPALTKGSAHEVSQDLAAGSVLGREGDPALAKDSAAGSSXXXXXXXPRAGEDSSVVTVQPALTKGSEHDLSKDSASVSVSDRDGDADLANDSAAGWSRDSAAGSPRPREEDSSVVPVQPALTKGSEHETSQDSAAGSVLSREGGTAAAGSSXXXXXXXXXXXXDNVVPARPAMAKGSAGTVSQDSAAGSMSGQEGDAAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVPLPMEPPPPIQTSSKTGASSLADTGVFDSCPPSTGASPSEPGSQRSLSVGTVPQFLSMPLVLAAREKASAAVAAWQKDRRNSPRPRPPVSPGPAALSQSSPLKSAFRFRKPSAAVEHDDEGPEITPPSAATLGGGSGRKLSAPPLSRTFSALSSAASHASPGSASRSASRTTRPPFVPTIELSPRASLPASPHAPGPRITDTAKFYRERANAAPAPAGDIGLLPPASKAYFGRPSGFSVHVLVASALSAADLGDRQQQHLE 946
BLAST of mRNA_Ecto-sp13_S_contig11860.1594.1 vs. uniprot
Match: A0A150FVH8_GONPE (MYND-type domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FVH8_GONPE) HSP 1 Score: 55.1 bits (131), Expect = 6.970e-5 Identity = 27/59 (45.76%), Postives = 31/59 (52.54%), Query Frame = 1
Query: 67 PRCDSCGKRDGEDAGGEGQPKVRLKLCARCRAVAYCGMECQKAGWKVHREVCVHYASAA 243
PRC + G+ D G LK CA CRAV YCG ECQ+A W HR C +AA
Sbjct: 115 PRCSNFGRAAEADLG--------LKQCAGCRAVRYCGAECQRAHWPEHRPACAEVKAAA 165 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11860.1594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11860.1594.1 >prot_Ecto-sp13_S_contig11860.1594.1 ID=prot_Ecto-sp13_S_contig11860.1594.1|Name=mRNA_Ecto-sp13_S_contig11860.1594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=978bp MSNRGKQFKALSPKKVSRRKRTPRCDSCGKRDGEDAGGEGQPKVRLKLCAback to top mRNA from alignment at Ecto-sp13_S_contig11860:3..3298- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11860.1594.1 ID=mRNA_Ecto-sp13_S_contig11860.1594.1|Name=mRNA_Ecto-sp13_S_contig11860.1594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11860:3..3298- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11860:3..3298- >mRNA_Ecto-sp13_S_contig11860.1594.1 ID=mRNA_Ecto-sp13_S_contig11860.1594.1|Name=mRNA_Ecto-sp13_S_contig11860.1594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2934bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11860:3..3298- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |