prot_Ecto-sp13_S_contig11839.1580.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11839.1580.1
Unique Nameprot_Ecto-sp13_S_contig11839.1580.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length163
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11839.1580.1 vs. uniprot
Match: D7FK87_ECTSI (Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK87_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.880e-50
Identity = 104/154 (67.53%), Postives = 105/154 (68.18%), Query Frame = 0 
Query:    3 MASLRLTVLWACCFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVSASVVSAREAVVELPPLGGDGVGYSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAVA-AGEAGDNAARELRFSTPEA 155
            MASLRLTVL ACCFS                                              +ASVVSAREAVVELPPLGGDGVGYSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAA A AGEAGDNAARELRFSTPEA
Sbjct:    1 MASLRLTVLGACCFSS--------------------------------------------AAASVVSAREAVVELPPLGGDGVGYSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAAAPAGEAGDNAARELRFSTPEA 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11839.1580.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK87_ECTSI1.880e-5067.53Similar to Tyrosyl-tRNA synthetase, cytoplasmic (T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 59..127
e-value: 5.7E-7
score: 29.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..162
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.742
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 59..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11839contigEcto-sp13_S_contig11839:1168..3073 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11839.1580.1mRNA_Ecto-sp13_S_contig11839.1580.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11839 930..3123 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11839.1580.1 ID=prot_Ecto-sp13_S_contig11839.1580.1|Name=mRNA_Ecto-sp13_S_contig11839.1580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MGMASLRLTVLWACCFSSAAGFFAAPLASGGAASARNTLPTTAGTAAAAS
TASGGGGAAPPMVSASVVSAREAVVELPPLGGDGVGYSVKWFEEDNPAIF
DQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAVAAGEAGDNAARELRF
STPEASRLYGHT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR036116FN3_sf