mRNA_Ecto-sp13_S_contig11839.1580.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11839.1580.1
Unique NamemRNA_Ecto-sp13_S_contig11839.1580.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11839.1580.1 vs. uniprot
Match: D7FK87_ECTSI (Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK87_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.050e-48
Identity = 104/154 (67.53%), Postives = 105/154 (68.18%), Query Frame = 3 
Query:   57 MASLRLTVLWACCFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVSASVVSAREAVVELPPLGGDGVGYSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAVA-AGEAGDNAARELRFSTPEA 515
            MASLRLTVL ACCFS                                              +ASVVSAREAVVELPPLGGDGVGYSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAA A AGEAGDNAARELRFSTPEA
Sbjct:    1 MASLRLTVLGACCFSS--------------------------------------------AAASVVSAREAVVELPPLGGDGVGYSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAAAPAGEAGDNAARELRFSTPEA 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11839.1580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK87_ECTSI1.050e-4867.53Similar to Tyrosyl-tRNA synthetase, cytoplasmic (T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11839contigEcto-sp13_S_contig11839:930..3123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score173.3
Seed ortholog evalue9.1e-41
Seed eggNOG ortholog2880.D7FK87
Preferred nameYARS
Model size777
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categorychloroplast
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
Exons3
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
EC6.1.1.1
Cds size489
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.934693-UTR-Ecto-sp13_S_contig11839:929..11671681462624.934693-UTR-Ecto-sp13_S_contig11839:929..1167Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11839 930..1167 -
1681462624.981217-UTR-Ecto-sp13_S_contig11839:3073..31231681462624.981217-UTR-Ecto-sp13_S_contig11839:3073..3123Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11839 3074..3123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.9484131-CDS-Ecto-sp13_S_contig11839:1167..13501681462624.9484131-CDS-Ecto-sp13_S_contig11839:1167..1350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11839 1168..1350 -
1681462624.9589288-CDS-Ecto-sp13_S_contig11839:2083..23281681462624.9589288-CDS-Ecto-sp13_S_contig11839:2083..2328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11839 2084..2328 -
1681462624.9698594-CDS-Ecto-sp13_S_contig11839:3012..30731681462624.9698594-CDS-Ecto-sp13_S_contig11839:3012..3073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11839 3013..3073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11839.1580.1prot_Ecto-sp13_S_contig11839.1580.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11839 1168..3073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11839.1580.1

>prot_Ecto-sp13_S_contig11839.1580.1 ID=prot_Ecto-sp13_S_contig11839.1580.1|Name=mRNA_Ecto-sp13_S_contig11839.1580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MGMASLRLTVLWACCFSSAAGFFAAPLASGGAASARNTLPTTAGTAAAAS
TASGGGGAAPPMVSASVVSAREAVVELPPLGGDGVGYSVKWFEEDNPAIF
DQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAVAAGEAGDNAARELRF
STPEASRLYGHT*
back to top

mRNA from alignment at Ecto-sp13_S_contig11839:930..3123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11839.1580.1 ID=mRNA_Ecto-sp13_S_contig11839.1580.1|Name=mRNA_Ecto-sp13_S_contig11839.1580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2194bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11839:930..3123- (Ectocarpus species13 EcNAP12_S_4_19m)
AATCTCAACCCGACCTTGCTTGCCTGCTGGGCTTCCTCTTCATTACTGCG
ATGGGCATGGCATCTCTCCGGCTCACAGTTCTGTGGGCTTGCTGTTTTTC
AAGCGCAGCTGGTGAGAGAGCAAGCCACATCCCTAGCGGCAGTAGTGTAG
GTCTCCCCATTTTTCACATGTGATGTGTTTACGGTCGACGCTGTAGGTCT
ACTTCTACCTGCTGCACGTTGTGCTTATGCCTGAATACCGCATTGACTTA
TCTACTCGTACCTGCAATTGACGTCGTCATTCCATGAGTTCTACGAAGCT
CTGGTGAGTACATCTTCGGATCACCACAACGAATGTATTGAGCACAGTCG
ATCTCAGCATGATGTAAGATACCACCCCTTTGTAAGCCGTTGTGGCCAAC
ACTTCTACCGAGGTGTGCGTGCAACATGTGTTTCCACCGCACCAATTGGC
GGTCGATGCTACAGCAGGATACCCCCAACAGGGCGGTGGTGGAGAATTCA
TATCGAGAGCTTTCCCGAGACGAATCGTTCAGTGTTGGCAATCGCGTTTG
CTCCCGAGGTCTACTATACCGAGCCCGAATGTTACACCATGTGACGTTTG
GATGCTCAAGGTATTCCCCCCCCTCCCAAAAGCATGTTGGCATGACACAC
GTTTTTTTCCTTGAGACATATGTGTCAGCCACAACGGAAGTTGCCGGTTT
CGGGTGCAACACGCGTGACAAAAGAAGAAGACGACCAACAGGCACGCACA
CAATTTTCCCACACCCACACTCTCCCGTTTGCTTCGTCCCCACAGGCTTT
TTCGCCGCCCCGCTCGCGTCCGGCGGTGCCGCGTCTGCCCGAAACACTCT
TCCTACCACTGCCGGTACCGCTGCCGCTGCCTCGACGGCCAGTGGTGGTG
GTGGTGCTGCGCCTCCGATGGTATCGGCGTCAGTTGTCTCGGCGAGAGAG
GCCGTCGTGGAGCTGCCTCCCCTCGGTGGTGATGGGGTAGGGTATTCCGT
GAAGTGGTTCGAAGAGGACAACCCCGCAATCTTCGATCAGGTGTGTGTGT
GTGTGTGTTTGCGTTTTGCAAGCTCACCCGACCAGCAAAGACACCAGGTT
CCGCGGGAAAAAACAATAGAGATGAATCGCGGAGTCCACGCAGATTTAAT
ATTTCAAACCAAGCAGGTGGATGGAAGTAAAAACATGTTAAGGTAGTACG
TTCTGTGAGTCTCTATTGAAACTGATACCGTACGAGTGGTGCCCATGCTC
TGGCAAGGGACCGGCCTCCGCTCCATGAAAACGATGCCAGTCACGCTCGT
CCAGGTCATGCGGGAGAGTATTTAGTCTACTGTAGTACCTTCGCCTTCGT
AGGCAAAGGCCAGGTGTCGTTGAGACTCGCGGCGGGCTGTCTCAGACCCG
TGCGGTTTCGGGATACGTCGTTTCGGCACTTTGTTCCAGCGGTATTCCAC
GCCCCGGTGGCGTGACTCTGCGAAGGAACTTACGTCAAACGATTCCGCAG
GAAACGAAGCCGTTGCACCTGGTGCTGCTAGTACTGGTGCTGCTGCTATC
GTTGCTTTTTCCATTGACCCATCTCATTAAGTTTCCCCGTTGTTACAAGT
CAGGCAAAAGTCTTCAAAACGACTAAAAGGGGCACCACCGCCCAGCGGGA
TGGAGGAGCATGGTGGGGGGGGCAATATTCTCGATAGGAAGGGTAAGCTT
GTGAGTGGGTGACGGCTTTCCCTGCCTCGTTTTCGTGGGCTCCCCTGTGC
GTCGTTTTTTACGGCGAGAGCAGGCGACGGCCTCGCTGCAATCCAGGCTA
GTTTTGTCGGACCTCTCTCCCGGAACAGAATACGTGGCGGTGGTGAGAAG
AACAGCGACAGCAGCAGCAGTGGCAGCGGGGGAGGCGGGCGACAACGCCG
CGAGGGAACTCCGCTTCTCCACACCAGAGGCGAGTCGGCTCTACGGGCAC
ACGTAGGCGAGGGTGTAGAGTGGTTGGTATCCTGCGTGTTGCGGCGGATA
GGCACAAGTGTTCGGGTGGCCACGCCAACAGCGGCGGCAGCGTGACCTAA
ATATGCCTTTATTTTCGGTAAGGTAGTGGGGCATGGTGGTGGTGACAACT
GCGGGAAAGGCGTTTGTGGCGCATTGGAAGTTTGCAGGTCTCTCCGCCCG
CCGAAACCATACCCGAAAAGAACCTGTGGATGACTTTACGAGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11839:930..3123-

>mRNA_Ecto-sp13_S_contig11839.1580.1 ID=mRNA_Ecto-sp13_S_contig11839.1580.1|Name=mRNA_Ecto-sp13_S_contig11839.1580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11839:930..3123- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCATGGCATCTCTCCGGCTCACAGTTCTGTGGGCTTGCTGTTTTTC
AAGCGCAGCTGGCTTTTTCGCCGCCCCGCTCGCGTCCGGCGGTGCCGCGT
CTGCCCGAAACACTCTTCCTACCACTGCCGGTACCGCTGCCGCTGCCTCG
ACGGCCAGTGGTGGTGGTGGTGCTGCGCCTCCGATGGTATCGGCGTCAGT
TGTCTCGGCGAGAGAGGCCGTCGTGGAGCTGCCTCCCCTCGGTGGTGATG
GGGTAGGGTATTCCGTGAAGTGGTTCGAAGAGGACAACCCCGCAATCTTC
GATCAGGCGACGGCCTCGCTGCAATCCAGGCTAGTTTTGTCGGACCTCTC
TCCCGGAACAGAATACGTGGCGGTGGTGAGAAGAACAGCGACAGCAGCAG
CAGTGGCAGCGGGGGAGGCGGGCGACAACGCCGCGAGGGAACTCCGCTTC
TCCACACCAGAGGCGAGTCGGCTCTACGGGCACACGTAG
back to top