prot_Ecto-sp13_S_contig11704.1473.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11704.1473.1
Unique Nameprot_Ecto-sp13_S_contig11704.1473.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length51
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11704.1473.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 5.350e-29
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 
Query:    1 RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD 51
            RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD
Sbjct:  230 RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD 280
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BLAST of mRNA_Ecto-sp13_S_contig11704.1473.1 vs. uniprot
Match: D7FUS9_ECTSI (DNA repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS9_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.200e-28
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 
Query:    1 RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD 51
            RRCDEKI KGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD
Sbjct:   16 RRCDEKIMKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11704.1473.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN56_9PHAE5.350e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUS9_ECTSI3.200e-2898.04DNA repair protein n=1 Tax=Ectocarpus siliculosus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001510Zinc finger, PARP-typePFAMPF00645zf-PARPcoord: 1..40
e-value: 8.3E-7
score: 29.8
IPR001510Zinc finger, PARP-typePROSITEPS50064PARP_ZN_FINGER_2coord: 1..51
score: 9.221
IPR036957Zinc finger, PARP-type superfamilyGENE3D3.30.1740.10coord: 1..51
e-value: 1.5E-7
score: 33.4
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 1..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11704contigEcto-sp13_S_contig11704:153..305 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11704.1473.1mRNA_Ecto-sp13_S_contig11704.1473.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11704 153..305 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11704.1473.1 ID=prot_Ecto-sp13_S_contig11704.1473.1|Name=mRNA_Ecto-sp13_S_contig11704.1473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDL
D
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001510Znf_PARP
IPR036957Znf_PARP_sf