mRNA_Ecto-sp13_S_contig11704.1473.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11704.1473.1
Unique NamemRNA_Ecto-sp13_S_contig11704.1473.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11704.1473.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 5.350e-29
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD 153
            RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD
Sbjct:  230 RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD 280
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BLAST of mRNA_Ecto-sp13_S_contig11704.1473.1 vs. uniprot
Match: D7FUS9_ECTSI (DNA repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS9_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.200e-28
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD 153
            RRCDEKI KGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD
Sbjct:   16 RRCDEKIMKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDLD 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11704.1473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN56_9PHAE5.350e-29100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUS9_ECTSI3.200e-2898.04DNA repair protein n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11704contigEcto-sp13_S_contig11704:153..305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score113.2
Seed ortholog evalue3.5e-23
Seed eggNOG ortholog2880.D7FUS9
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,KOG1002@2759
Cds size153
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.4455733-CDS-Ecto-sp13_S_contig11704:152..3051681462616.4455733-CDS-Ecto-sp13_S_contig11704:152..305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11704 153..305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11704.1473.1prot_Ecto-sp13_S_contig11704.1473.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11704 153..305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11704.1473.1

>prot_Ecto-sp13_S_contig11704.1473.1 ID=prot_Ecto-sp13_S_contig11704.1473.1|Name=mRNA_Ecto-sp13_S_contig11704.1473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
RRCDEKITKGALKIGVVTEGSWGPSTQWHHLMCTVFKVTTPEEVEGYGDL
D
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mRNA from alignment at Ecto-sp13_S_contig11704:153..305-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11704.1473.1 ID=mRNA_Ecto-sp13_S_contig11704.1473.1|Name=mRNA_Ecto-sp13_S_contig11704.1473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11704:153..305- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGTGCGACGAGAAGATCACGAAAGGCGCTCTCAAGATCGGAGTGGT
CACGGAGGGGAGCTGGGGCCCGTCGACACAATGGCACCACTTGATGTGCA
CCGTGTTCAAGGTCACCACGCCCGAAGAGGTGGAAGGCTACGGAGATCTC
GAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11704:153..305-

>mRNA_Ecto-sp13_S_contig11704.1473.1 ID=mRNA_Ecto-sp13_S_contig11704.1473.1|Name=mRNA_Ecto-sp13_S_contig11704.1473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11704:153..305- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGTGCGACGAGAAGATCACGAAAGGCGCTCTCAAGATCGGAGTGGT
CACGGAGGGGAGCTGGGGCCCGTCGACACAATGGCACCACTTGATGTGCA
CCGTGTTCAAGGTCACCACGCCCGAAGAGGTGGAAGGCTACGGAGATCTC
GAT
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