prot_Ecto-sp13_S_contig11653.1436.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11653.1436.1
Unique Nameprot_Ecto-sp13_S_contig11653.1436.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length188
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11653.1436.1 vs. uniprot
Match: A0A6H5L4X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X8_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 7.240e-43
Identity = 109/152 (71.71%), Postives = 116/152 (76.32%), Query Frame = 0 
Query:    1 MFRRRLRFLRGSQASVVLE---AAXXXXXXXVSVEEGRAAALEITPEGEATAAEWAGNDGPVGDLARAALQGSTRVVGPKGVAEAGTISPRDRDDRGHCSSXXXXXXXXXXXXXXXPSLRRLRQPPSEVVMRTPVGIRLGRRRRSREGNIKA 149
            MFRRRLR ++GS A VVLE   AA  X    VSVEEGR AAL +TPEGEAT AE AGNDG VGD  RAALQGS+RVVGPKGVAEAG I PRDRDDRGH S XXXXXXXXXX      S R LRQ P E  MR PVGIR+GRRRRSREG+I+A
Sbjct:  324 MFRRRLRSVKGSHAGVVLEEAVAAAAXAAGAVSVEEGRTAALGMTPEGEATIAEEAGNDGAVGDPVRAALQGSSRVVGPKGVAEAGAIFPRDRDDRGHSSXXXXXXXXXXX------SSRCLRQQPPEAAMRIPVGIRVGRRRRSREGDIEA 469
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BLAST of mRNA_Ecto-sp13_S_contig11653.1436.1 vs. uniprot
Match: D7G2H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H4_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 2.880e-38
Identity = 114/150 (76.00%), Postives = 118/150 (78.67%), Query Frame = 0 
Query:    1 MFRRRLRFLRGSQASVVLEAAXXXXXXXVSVEEGRAAALEITPEGEATAAEWAGNDGPVGDLARAALQGSTRVVGPKGVAEAGTISPRDRDDRGHCSSXXXXXXXXXXXXXXXPSLRRLRQPPSEVVMRTPVGIRLGRRR-RSREGNIKA 149
            MFRRRLR +RGSQASV LEAA    XXXV  EEGR     ITPEGEATAAE AGNDG VGD ARAALQGS RVV PKGVAEAG I PRDRDDRGHCSSXXXXXXXXXXXXXXX           +VVMRTP+GIRLGRRR RSREGNI+A
Sbjct:  301 MFRRRLRSVRGSQASVALEAAAAAAXXXV--EEGRXXXXXITPEGEATAAEGAGNDGAVGDPARAALQGS-RVVDPKGVAEAGAIFPRDRDDRGHCSSXXXXXXXXXXXXXXXXXXXX------DVVMRTPLGIRLGRRRWRSREGNIEA 441
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11653.1436.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4X8_9PHAE7.240e-4371.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2H4_ECTSI2.880e-3876.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..187
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11653contigEcto-sp13_S_contig11653:4295..4858 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11653.1436.1mRNA_Ecto-sp13_S_contig11653.1436.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11653 4086..4950 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11653.1436.1 ID=prot_Ecto-sp13_S_contig11653.1436.1|Name=mRNA_Ecto-sp13_S_contig11653.1436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
MFRRRLRFLRGSQASVVLEAAAAAAAAAVSVEEGRAAALEITPEGEATAA
EWAGNDGPVGDLARAALQGSTRVVGPKGVAEAGTISPRDRDDRGHCSSSS
SPSSSSSSSSAASPSLRRLRQPPSEVVMRTPVGIRLGRRRRSREGNIKAD
RRADAAADAGALVAGGIAGVGVGVGRGDGRGDGGPPP*
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