mRNA_Ecto-sp13_S_contig11653.1436.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11653.1436.1
Unique NamemRNA_Ecto-sp13_S_contig11653.1436.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11653.1436.1 vs. uniprot
Match: A0A6H5L4X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X8_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 3.250e-70
Identity = 160/223 (71.75%), Postives = 171/223 (76.68%), Query Frame = 3 
Query:    3 AEEGVSRCSSTAASIDVCGGAGSDGGGG--VATQATGGHAKAPSVDSGSRKRGSRTGIAGQGVAKKGGVGAMFRRRLRFLRGSQASVVLE---AAXXXXXXXVSVEEGRAAALEITPEGEATAAEWAGNDGPVGDLARAALQGSTRVVGPKGVAEAGTISPRDRDDRGHCSSXXXXXXXXXXXXXXXPSLRRLRQPPSEVVMRTPVGIRLGRRRRSREGNIKA 656
            AEEGVSRCSSTAAS+ V GGAG        VA QATGGHAKAPSVDSG  KRGSR G+AG+GVAK+  VGAMFRRRLR ++GS A VVLE   AA  X    VSVEEGR AAL +TPEGEAT AE AGNDG VGD  RAALQGS+RVVGPKGVAEAG I PRDRDDRGH S XXXXXXXXXX      S R LRQ P E  MR PVGIR+GRRRRSREG+I+A
Sbjct:  253 AEEGVSRCSSTAASVGVRGGAGXXXXXXXXVAAQATGGHAKAPSVDSGWCKRGSRRGVAGKGVAKESAVGAMFRRRLRSVKGSHAGVVLEEAVAAAAXAAGAVSVEEGRTAALGMTPEGEATIAEEAGNDGAVGDPVRAALQGSSRVVGPKGVAEAGAIFPRDRDDRGHSSXXXXXXXXXXX------SSRCLRQQPPEAAMRIPVGIRVGRRRRSREGDIEA 469
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BLAST of mRNA_Ecto-sp13_S_contig11653.1436.1 vs. uniprot
Match: D7G2H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H4_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.260e-53
Identity = 139/181 (76.80%), Postives = 146/181 (80.66%), Query Frame = 3 
Query:  117 KAPSVDSGSRKRGSRTGIAGQGVAKKGGVGAMFRRRLRFLRGSQASVVLEAAXXXXXXXVSVEEGRAAALEITPEGEATAAEWAGNDGPVGDLARAALQGSTRVVGPKGVAEAGTISPRDRDDRGHCSSXXXXXXXXXXXXXXXPSLRRLRQPPSEVVMRTPVGIRLGRRR-RSREGNIKA 656
            KAPSVDSG RKRGSR+GIAG+G+AK  GVGAMFRRRLR +RGSQASV LEAA    XXXV  EEGR     ITPEGEATAAE AGNDG VGD ARAALQGS RVV PKGVAEAG I PRDRDDRGHCSSXXXXXXXXXXXXXXX           +VVMRTP+GIRLGRRR RSREGNI+A
Sbjct:  270 KAPSVDSGWRKRGSRSGIAGKGLAKTSGVGAMFRRRLRSVRGSQASVALEAAAAAAXXXV--EEGRXXXXXITPEGEATAAEGAGNDGAVGDPARAALQGS-RVVDPKGVAEAGAIFPRDRDDRGHCSSXXXXXXXXXXXXXXXXXXXX------DVVMRTPLGIRLGRRRWRSREGNIEA 441
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11653.1436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4X8_9PHAE3.250e-7071.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2H4_ECTSI1.260e-5376.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11653contigEcto-sp13_S_contig11653:4086..4950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size865
Hectar predicted targeting categorysignal peptide
Exons1
Cds size564
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462613.5663624-UTR-Ecto-sp13_S_contig11653:4085..42941681462613.5663624-UTR-Ecto-sp13_S_contig11653:4085..4294Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11653 4086..4294 +
1681462613.5825574-UTR-Ecto-sp13_S_contig11653:4858..49501681462613.5825574-UTR-Ecto-sp13_S_contig11653:4858..4950Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11653 4859..4950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462613.574679-CDS-Ecto-sp13_S_contig11653:4294..48581681462613.574679-CDS-Ecto-sp13_S_contig11653:4294..4858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11653 4295..4858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11653.1436.1prot_Ecto-sp13_S_contig11653.1436.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11653 4295..4858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11653.1436.1

>prot_Ecto-sp13_S_contig11653.1436.1 ID=prot_Ecto-sp13_S_contig11653.1436.1|Name=mRNA_Ecto-sp13_S_contig11653.1436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
MFRRRLRFLRGSQASVVLEAAAAAAAAAVSVEEGRAAALEITPEGEATAA
EWAGNDGPVGDLARAALQGSTRVVGPKGVAEAGTISPRDRDDRGHCSSSS
SPSSSSSSSSAASPSLRRLRQPPSEVVMRTPVGIRLGRRRRSREGNIKAD
RRADAAADAGALVAGGIAGVGVGVGRGDGRGDGGPPP*
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mRNA from alignment at Ecto-sp13_S_contig11653:4086..4950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11653.1436.1 ID=mRNA_Ecto-sp13_S_contig11653.1436.1|Name=mRNA_Ecto-sp13_S_contig11653.1436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=865bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11653:4086..4950+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCCGAAGAAGGCGTCTCCCGTTGTAGTAGCACGGCCGCCAGTATTGAC
GTCTGCGGTGGTGCTGGGAGTGATGGTGGTGGTGGCGTTGCAACTCAGGC
TACAGGTGGCCATGCGAAGGCCCCCTCCGTCGATAGCGGCTCTCGCAAGA
GGGGAAGCCGCACTGGCATCGCTGGTCAGGGCGTGGCCAAAAAGGGCGGC
GTCGGGGCGATGTTCCGACGCCGGTTGCGCTTCTTGAGGGGAAGCCAAGC
CAGTGTTGTGTTGGAGGCAGCGGCGGCGGCGGCGGCGGCGGCGGTATCGG
TAGAGGAGGGACGGGCAGCGGCGTTGGAGATAACCCCGGAGGGAGAGGCT
ACCGCCGCAGAATGGGCGGGGAATGACGGCCCCGTTGGTGATCTCGCTCG
CGCTGCGCTGCAAGGCAGCACCCGCGTCGTTGGCCCCAAGGGCGTAGCGG
AGGCAGGGACTATCTCCCCCCGCGATCGCGACGACCGCGGCCACTGCTCG
TCGTCGTCGTCGCCGTCGTCTTCGTCGTCTTCTTCTTCCGCTGCCTCTCC
CTCGTTGCGTCGTCTGCGACAACCGCCATCGGAGGTGGTGATGCGAACTC
CTGTGGGGATCCGTTTGGGGCGGCGGCGGCGCTCCCGGGAGGGGAATATC
AAGGCCGATCGGAGGGCCGATGCCGCGGCCGATGCCGGTGCCCTTGTTGC
TGGCGGCATCGCTGGCGTCGGTGTGGGTGTAGGCCGAGGCGACGGCCGTG
GTGACGGTGGGCCTCCTCCTTGAGGGTGTCTTTATCCAAGGTTGAGTGCA
TATCCCTTCGGCTTCTCGCTTTTCGAAAGGTTATTCTTTTGCGTAGGCTA
GACTTTATGCATGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11653:4086..4950+

>mRNA_Ecto-sp13_S_contig11653.1436.1 ID=mRNA_Ecto-sp13_S_contig11653.1436.1|Name=mRNA_Ecto-sp13_S_contig11653.1436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11653:4086..4950+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCGACGCCGGTTGCGCTTCTTGAGGGGAAGCCAAGCCAGTGTTGT
GTTGGAGGCAGCGGCGGCGGCGGCGGCGGCGGCGGTATCGGTAGAGGAGG
GACGGGCAGCGGCGTTGGAGATAACCCCGGAGGGAGAGGCTACCGCCGCA
GAATGGGCGGGGAATGACGGCCCCGTTGGTGATCTCGCTCGCGCTGCGCT
GCAAGGCAGCACCCGCGTCGTTGGCCCCAAGGGCGTAGCGGAGGCAGGGA
CTATCTCCCCCCGCGATCGCGACGACCGCGGCCACTGCTCGTCGTCGTCG
TCGCCGTCGTCTTCGTCGTCTTCTTCTTCCGCTGCCTCTCCCTCGTTGCG
TCGTCTGCGACAACCGCCATCGGAGGTGGTGATGCGAACTCCTGTGGGGA
TCCGTTTGGGGCGGCGGCGGCGCTCCCGGGAGGGGAATATCAAGGCCGAT
CGGAGGGCCGATGCCGCGGCCGATGCCGGTGCCCTTGTTGCTGGCGGCAT
CGCTGGCGTCGGTGTGGGTGTAGGCCGAGGCGACGGCCGTGGTGACGGTG
GGCCTCCTCCTTGA
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