prot_Ecto-sp13_S_contig11576.1372.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11576.1372.1
Unique Nameprot_Ecto-sp13_S_contig11576.1372.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length136
Homology
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: A0A6H5JPR9_9PHAE (Aconitase_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPR9_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 1.920e-82
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0
Query:    1 MMWGFSTTATMVAAVSSSVSAFVVPMPTAGTTAVASRPGCKSPAGVAPRRAAEADAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPDVYTTRYVEEGSMAT 136
            MMWGF+TTATMVAAVSSSVSAF VP+PTAGTTAVASRPGCKS AGVAPRRAAEADAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNA+EYEKLGSYAMIGLPDVYTTRYVEEGSMAT
Sbjct:    1 MMWGFATTATMVAAVSSSVSAFFVPVPTAGTTAVASRPGCKSSAGVAPRRAAEADAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNANEYEKLGSYAMIGLPDVYTTRYVEEGSMAT 136          
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: B7ZGN7_9PHAE (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN7_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 4.290e-45
Identity = 92/135 (68.15%), Postives = 101/135 (74.81%), Query Frame = 0
Query:    2 MWGFSTTATMVAAVSSSVSAFVVPMPTAGTTAVASRPGCKSPAGVAPRRAAEADAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPDVYTTRYVEEGSMAT 136
            M GF+   TMVA+V+S   AFV P+  AG  A A+RP C+S   VA + AA  D     DPR KEMPK R+RP KYTG CFVVKDNIDTDQIIPAEYLTLVPS ADEYEKLGSYAMIGLP VY TR+VEEGSM T
Sbjct:    3 MLGFAVALTMVASVTSRAGAFVPPISAAG--AAATRPACQS--SVARQAAASDDM----DPREKEMPKFRERPTKYTGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPSVYKTRFVEEGSMKT 129          
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: W7SZS5_9STRA (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SZS5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.720e-26
Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 0
Query:   59 IDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPD-VYTTRYVEEGSMAT 136
            +DDPR+ EMPK R RP +Y G+ FV +DNIDTDQIIPAEYLTLVPS  DEYE+LGSYA+IGLP  +Y   YV+ G   T
Sbjct:   44 VDDPRLLEMPKFRPRPRQYRGKAFVARDNIDTDQIIPAEYLTLVPSKTDEYEQLGSYALIGLPQALYPVPYVQPGHTKT 122          
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: A0A7J7Q700_9CHLO (Small subunit of isopropylmalate dehydratase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q700_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 2.400e-25
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0
Query:   72 DRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPDVYTTRYVEEGSMAT 136
            D P    G CFV KDNIDTDQIIPAEYLTLVPS  DEYEKLGSYA+IGLPD YTT++VEEG M T
Sbjct:   31 DAPRIVRGTCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDEYTTKFVEEGEMKT 95          
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: A0A2J8A327_9CHLO (3-isopropylmalate dehydratase small subunit n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A327_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 1.010e-24
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 0
Query:   69 KNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPD-VYTTRYVEEGSMAT 136
            K    P   +G+C+V +DNIDTDQIIPAEYLTLVPS  DEYEKLGSYA+IGLPD  YTTRYV+EG M T
Sbjct:   32 KKEGEPRVISGKCYVTRDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDTYTTRYVQEGQMKT 100          
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: A8HYG8_CHLRE (Isopropylmalate dehydratase, small subunit n=4 Tax=Chlamydomonas TaxID=3052 RepID=A8HYG8_CHLRE)

HSP 1 Score: 101 bits (252), Expect = 3.770e-24
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = 0
Query:   74 PDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPD-VYTTRYVEEGSMAT 136
            P    G+CFV KDNIDTDQIIPAEYLTLVPS  DEYEKLGSYA+IGLPD  YTTRYV+EG M T
Sbjct:   33 PRVVRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDTYTTRYVKEGEMKT 96          
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: A0A4D9CY72_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY72_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.370e-24
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0
Query:   59 IDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPD-VYTTRYVEEGSMAT 136
            +DDPR+ EMPK R RP +Y G+ FV +DNIDTDQIIPAEYLTLVPS  DEYE+LGSYA+IGLP+ +Y   YV+ G   T
Sbjct:   44 VDDPRLLEMPKFRPRPRQYRGKAFVARDNIDTDQIIPAEYLTLVPSKTDEYEQLGSYALIGLPEALYPVPYVQPGHTKT 122          
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: A0A836BR91_9CHLO (Aconitase_C domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BR91_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 5.310e-24
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0
Query:   69 KNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPDV-YTTRYVEEGSMAT 136
            K  + P    G+CFV KDNIDTDQIIPAEYLTLVPS  DEYEKLGSYA+IGLPDV Y TRYV +GSM T
Sbjct:   28 KKPNEPRIIRGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDVEYPTRYVNDGSMKT 96          
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: A6XGU6_9CHLO (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A6XGU6_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 2.750e-23
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0
Query:   78 TGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPD-VYTTRYVEEGSMAT 136
            TG+CFV KDNIDTDQIIPAEYLTLVPS  DEYEKLGSYA+IGLPD +Y TR+V++G M T
Sbjct:    5 TGKCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDDLYKTRFVKDGKMKT 64          
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Match: UPI00053C5E2F (3-isopropylmalate dehydratase small subunit 3-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C5E2F)

HSP 1 Score: 99.4 bits (246), Expect = 6.660e-23
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0
Query:   77 YTGQCFVVKDNIDTDQIIPAEYLTLVPSNADEYEKLGSYAMIGLPDVYTTRYVEEGSMAT 136
            + G C+VV DNIDTDQIIP+EYLTLVPSN DEYEKLGSYAMIGLP  YTTR+VE G M T
Sbjct:   70 FHGLCYVVGDNIDTDQIIPSEYLTLVPSNPDEYEKLGSYAMIGLPASYTTRFVEPGEMKT 129          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11576.1372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPR9_9PHAE1.920e-8296.32Aconitase_C domain-containing protein n=2 Tax=Ecto... [more]
B7ZGN7_9PHAE4.290e-4568.153-isopropylmalate dehydratase (Fragment) n=1 Tax=L... [more]
W7SZS5_9STRA1.720e-2665.823-isopropylmalate dehydratase (Fragment) n=1 Tax=N... [more]
A0A7J7Q700_9CHLO2.400e-2576.92Small subunit of isopropylmalate dehydratase n=1 T... [more]
A0A2J8A327_9CHLO1.010e-2471.013-isopropylmalate dehydratase small subunit n=1 Ta... [more]
A8HYG8_CHLRE3.770e-2478.13Isopropylmalate dehydratase, small subunit n=4 Tax... [more]
A0A4D9CY72_9STRA4.370e-2465.82Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836BR91_9CHLO5.310e-2473.91Aconitase_C domain-containing protein n=1 Tax=Edap... [more]
A6XGU6_9CHLO2.750e-2378.333-isopropylmalate dehydratase (Fragment) n=1 Tax=P... [more]
UPI00053C5E2F6.660e-2378.333-isopropylmalate dehydratase small subunit 3-like... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015928Aconitase/3-isopropylmalate dehydratase, swivelGENE3D3.20.19.10coord: 75..135
e-value: 1.6E-7
score: 33.0
NoneNo IPR availablePANTHERPTHR43345FAMILY NOT NAMEDcoord: 74..135
NoneNo IPR availablePANTHERPTHR43345:SF23-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATEDcoord: 74..135
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..136
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.702
NoneNo IPR availableSUPERFAMILY52016LeuD/IlvD-likecoord: 58..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11576contigEcto-sp13_S_contig11576:3344..5362 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11576.1372.1mRNA_Ecto-sp13_S_contig11576.1372.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11576 3344..5362 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11576.1372.1 ID=prot_Ecto-sp13_S_contig11576.1372.1|Name=mRNA_Ecto-sp13_S_contig11576.1372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MMWGFSTTATMVAAVSSSVSAFVVPMPTAGTTAVASRPGCKSPAGVAPRR
AAEADAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLT
LVPSNADEYEKLGSYAMIGLPDVYTTRYVEEGSMAT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015928Aconitase/3IPM_dehydase_swvl