prot_Ecto-sp13_S_contig11539.1344.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11539.1344.1
Unique Nameprot_Ecto-sp13_S_contig11539.1344.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length285
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11539.1344.1 vs. uniprot
Match: D7FTW6_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW6_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 9.400e-96
Identity = 190/200 (95.00%), Postives = 191/200 (95.50%), Query Frame = 0 
Query:    1 MRSRSLTELELERTAGANGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQALQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGGVGSGGRSTQAHFR 200
            MRSRSLTELELERTAGA+GGA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   APTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQ LQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGG VGSG RSTQAHFR
Sbjct:  326 MRSRSLTELELERTAGASGGASSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQPLQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGAVGSGSRSTQAHFR 525
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BLAST of mRNA_Ecto-sp13_S_contig11539.1344.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.980e-17
Identity = 71/94 (75.53%), Postives = 71/94 (75.53%), Query Frame = 0 
Query:    1 MRSRSLTELELERTAGANGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHT 94
            MRSRSLTELELERTAGANGGA           XXXXXXXXXXXXXXXX          PTTRKPRS SNVDALFSSSTG SGGGIENGSPPRHT
Sbjct:  634 MRSRSLTELELERTAGANGGANSRGGGKPRNSXXXXXXXXXXXXXXXXGSSGEGGEAVPTTRKPRSASNVDALFSSSTGESGGGIENGSPPRHT 727
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11539.1344.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTW6_ECTSI9.400e-9695.00HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5KNV0_9PHAE5.980e-1775.53DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 103..180
e-value: 5.7E-6
score: 28.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11539contigEcto-sp13_S_contig11539:1193..4301 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11539.1344.1mRNA_Ecto-sp13_S_contig11539.1344.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11539 373..4977 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11539.1344.1 ID=prot_Ecto-sp13_S_contig11539.1344.1|Name=mRNA_Ecto-sp13_S_contig11539.1344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp
MRSRSLTELELERTAGANGGASSRGGGKPRNSRENQHHHEHEASREEEGS
SGDGGEAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGD
GLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQA
LQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGGVGSGGRSTQAHFR
MAVGPEEGKSGFASGRGRPIVVADSSPTEVLRRPRGSSMGGADSKVFVPS
AAASVAAEAAAAAAAPAPAEAVAAPSPQQFEDAD*
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