mRNA_Ecto-sp13_S_contig11539.1344.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11539.1344.1
Unique NamemRNA_Ecto-sp13_S_contig11539.1344.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11539.1344.1 vs. uniprot
Match: D7FTW6_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW6_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 2.610e-137
Identity = 255/266 (95.86%), Postives = 258/266 (96.99%), Query Frame = 1 
Query:    1 KAVNELTDRKSWRGGLRVSLANGVTVEKALAKLKAASNKKAKQEQKQRVNSRSPVDRGQKNVRDGQMRSRSLTELELERTAGANGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQALQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGGVGSGGRSTQAHFR 798
            +AVNELTDRKSWRGGLRVSLANGVTVEKALAKLKAASNKKAKQEQKQRVNSRSPVDRGQ+NVRDGQMRSRSLTELELERTAGA+GGA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQ LQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGG VGSG RSTQAHFR
Sbjct:  260 RAVNELTDRKSWRGGLRVSLANGVTVEKALAKLKAASNKKAKQEQKQRVNSRSPVDRGQRNVRDGQMRSRSLTELELERTAGASGGASSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQPLQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGAVGSGSRSTQAHFR 525
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BLAST of mRNA_Ecto-sp13_S_contig11539.1344.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.360e-26
Identity = 89/113 (78.76%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:  142 RVNSRSPVDRGQKNVRDGQMRSRSLTELELERTAGANGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHT 480
            +V SRSPVDRGQKNVRDGQMRSRSLTELELERTAGANGGA           XXXXXXXXXXXXXXXX        A PTTRKPRS SNVDALFSSSTG SGGGIENGSPPRHT
Sbjct:  615 KVTSRSPVDRGQKNVRDGQMRSRSLTELELERTAGANGGANSRGGGKPRNSXXXXXXXXXXXXXXXXGSSGEGGEAVPTTRKPRSASNVDALFSSSTGESGGGIENGSPPRHT 727
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11539.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTW6_ECTSI2.610e-13795.86HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5KNV0_9PHAE4.360e-2678.76DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11539contigEcto-sp13_S_contig11539:373..4977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score304.3
Seed ortholog evalue6e-80
Seed eggNOG ortholog2880.D7FTW6
Preferred nameLARP6
Model size1873
KEGG koko:K15191,ko:K18733
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006417,GO:0008092,GO:0008150,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010712,GO:0010714,GO:0017022,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032965,GO:0032967,GO:0032991,GO:0034248,GO:0034250,GO:0035613,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0097159,GO:1901363,GO:1902415,GO:1902416,GO:1905214,GO:1905216,GO:1990825,GO:1990904,GO:2000112
Exons5
EggNOG free text desc.RNA processing
EggNOG OGsCOG5193@1,KOG1855@2759
Ec32 ortholog descriptionRNA-binding protein Lupus La
Ec32 orthologEc-12_002800.1
Cds size855
COG Functional cat.JO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11539.1344.1prot_Ecto-sp13_S_contig11539.1344.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11539 1193..4301 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462605.741315-UTR-Ecto-sp13_S_contig11539:372..11921681462605.741315-UTR-Ecto-sp13_S_contig11539:372..1192Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11539 373..1192 -
1681462605.7925394-UTR-Ecto-sp13_S_contig11539:4301..43561681462605.7925394-UTR-Ecto-sp13_S_contig11539:4301..4356Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11539 4302..4356 -
1681462605.8021364-UTR-Ecto-sp13_S_contig11539:4834..49771681462605.8021364-UTR-Ecto-sp13_S_contig11539:4834..4977Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11539 4835..4977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462605.754435-CDS-Ecto-sp13_S_contig11539:1192..14481681462605.754435-CDS-Ecto-sp13_S_contig11539:1192..1448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11539 1193..1448 -
1681462605.7641776-CDS-Ecto-sp13_S_contig11539:2501..26711681462605.7641776-CDS-Ecto-sp13_S_contig11539:2501..2671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11539 2502..2671 -
1681462605.7735674-CDS-Ecto-sp13_S_contig11539:2946..30911681462605.7735674-CDS-Ecto-sp13_S_contig11539:2946..3091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11539 2947..3091 -
1681462605.7828422-CDS-Ecto-sp13_S_contig11539:4017..43011681462605.7828422-CDS-Ecto-sp13_S_contig11539:4017..4301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11539 4018..4301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11539.1344.1

>prot_Ecto-sp13_S_contig11539.1344.1 ID=prot_Ecto-sp13_S_contig11539.1344.1|Name=mRNA_Ecto-sp13_S_contig11539.1344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp
MRSRSLTELELERTAGANGGASSRGGGKPRNSRENQHHHEHEASREEEGS
SGDGGEAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGD
GLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQA
LQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGGVGSGGRSTQAHFR
MAVGPEEGKSGFASGRGRPIVVADSSPTEVLRRPRGSSMGGADSKVFVPS
AAASVAAEAAAAAAAPAPAEAVAAPSPQQFEDAD*
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mRNA from alignment at Ecto-sp13_S_contig11539:373..4977-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11539.1344.1 ID=mRNA_Ecto-sp13_S_contig11539.1344.1|Name=mRNA_Ecto-sp13_S_contig11539.1344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11539:373..4977- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTGTGAACGAGCTTACCGACAGGAAAAGTTGGCGGGGGGGGTTGCG
GGTGTCGCTGGCGAACGGAGTGACGGTGGAAAAGGCCCTGGCTAAGCTGA
AAGCGGCGTCCAACAAGAAGGCCAAGCAGGAACAGAAGCAAAGGTGGGGC
CGTGTTTCTGTCCGATGTGGCTCGTGCACGCGAGCGCGATGCGCGGGGGT
GAAGTTGTTGCTAGACAGGCGCGCCCGGCGATGGGGGGTGGCGGGATGAC
AGTCCTTGGCGCGTCTTCAATGGGCAGATTGTTTGTCTTTCAGGCGTATT
TCCGAGTGGAAGATGGGGAGAGTCAACTGAAATCGCTGGGGTTTTCACCG
AGAGCCTGTGATACAAGGTTTTTCGTTGTGGGTTACTACTCGAAACTTGG
GAGTTGGCGCGTTCAACTGTGTGGCCATCAAGCTGCTGGTTGCCGCTGAT
TCAGCCTTTGACACCCCCCGCCTGCGCCCTGTTGTGATAAGGATGCGAGG
TCAATGGTCTAACGACTACGGCATGCACGACGTTGAGTACACCCTCCCCC
CCTCCCCCCCCCCCGCCTGCGCCCTGTTGTGATGACTTGCCTTTCATTTG
GCGACGATAATGTTGTCGAAGAGTAAACTCGAGATCGCCCGTCGACCGCG
GCCAAAAGAATGTCCGCGACGGGCAGATGCGCTCCCGCTCCCTGACGGAG
CTGGAGCTCGAGCGAACCGCGGGCGCGAATGGCGGGGCAAGCAGCCGGGG
CGGAGGGAAACCTCGGAACTCCCGGGAGAACCAGCACCATCATGAACACG
AAGCCTCACGAGAAGAAGAGGGTAGCAGCGGGGACGGGGGGGAAGCGGCT
CCAACGACGCGCAAGCCTCGGTCCGTGTCTAACGTCGACGCCCTTTTCAG
CAGCAGCACCGGCGGGAGCGGCGGAGGGATTGAGAACGGATCCCCACCCC
GCCATACCATGTGCGTTGCGCTGCATTTCTGTTGTCGGGTCTTTTGTTTC
ATGTGCGAGTGGGACAGCTTATCGAGATGCTTGGTGCGGGACGGCATTGA
GGGTGTGTCTTGTCACAGAGGAAGGCGACCTGAAATCGCAACTGGAACAG
TAGGTTGCGATGTTCGGGTGTGCCTCGTGTCTGTCTGCGGCCGCTTCGAA
ACCCAGAAGTCGGGAATGGAACACCGCAGAACAACCACGTTTGCGCCGAA
AGGACCGGAAATGCCGATGGCAATGACAGAAACCGTGACCGCGAGGGTCA
CAGGGCGTTTCCCGGACAACGAATGGTCTCGGACGTCGACAACGAATGGT
CGCGGACGTCGGCCAATGTCAGGCGGGTATGAGTTCCTTTGGCTCGCCAC
GACGTGCCGAAAACTCAGCGAGCAATGCGCGATGGCGTTTGCGTCGGCCT
GGAATATTGAGGGCCAATACGACTGCCGGCACTCCACGTTGGTCGTTGTT
TTTCCATCGGATCTGGCTGCGAGGGCGGTCTTTGTCCGCGCCTACAAACT
GAAAACCATGCATGCACAGAAGGCACAGCAGGTGTAGCACTGAATGGAAT
ACCCAATCGAAGGCAATGCTAGAGGCAAGTGATCGGTGTGCTGCGATGGG
CGTGCCTACGTTTCCTCCGCCACTTGGATGGATGCCTTGACTCTTGGTGC
CGATAGTGGCGACTGGGGAGTGGGGACTGGCGATATGTGTGTTGGTTTGT
CCAGTGTCTCCCTCACCCCCCCCCCTCGCTCCCCTCAGTCTCCCGCGTGG
TGCAGAGCCACGCGCGCAGCCTTGGGGTGCCAGGACGCCACCCCTCCCCA
CCCTTCATCGTGTCCGTTGTTTCGTGCGAGGTAACCCTTTTCGTCGTGTC
GTTTGGTGACCTGTTGTCTCGTTTCCCGCTCCGAAGGGGCAGCGCTGGTG
ATGGCCTCCCGCGGAAGGGCGTGGTGCAGACGCTGTCTTCGGAGGGATGG
TCGTGGATCAAGAAGGATGGCCAAGGTTCCCGCAAGAGCGGCAACCGCAT
CCCCTTCGTGATGGGGGATGTTGTGATGAAGGTGATGGCGTCTTGTCATG
TTTTTGTGTGGAGGGAGGGGGGCGCAAGTGATGGATGGAAGAACGGAGGA
TAGTATCGAGGTGGCTATTTGCCCCGTTTGCGCTAGCAGTTATTCCAACT
TGATCGGGACATCTTAGTATCGTGGGTAAGATCGTAGGCATGCCAAAGCG
ACGAGGATTTGGGCGCGTCAATCGAGGGAGACTACCCCAGCAATGCCGCT
CTGGTTCCGCGCATGCCAACATGCCCCCCACAACACACACAAACGGCAAT
TGACAGGACGGCGAGCAGCGGCAGGCCTTGCAAAAGGGCGACCACGTGGA
GTACCGCGTCTGGAAAGACACGGAAGGCAGGTCGATGGCCGTAAGAGTTG
AGCGGGCCAAGGAGAGACCGCGGCCGGCTGGAGGCGGGGTGGGCAGTGGC
GGCCGTTCCACCCAGGCACATTTTCGGTGAGTGCAGCCATCGAGGGTGCG
CAGAGAGAGGGGGCGTTGGTTGCGTTGCCAGAAGGGGGGACCTGAAGGGG
GGACCTTAGGTTGGGGGCCAGGCAACTCTACCCGACTCTTGATGTGGAAG
CGGCTCATGTGTTTCTATCGTGTATTCCCAGCAGGCAAGGCACCGGCACG
AGGTTAAGGACTCATGGGTATAGAATAACGAGCCCTTGCCAACACTCGAA
TTCGTTGGCCGTGTTGCCGATGTTGGTGTGTACCAACAAGTGCTGAAGCG
ACGTCCTCCTGTTGCGCGAAAAGAAGTGCCACAACCACACCCATACGACC
ATGTGTTAAGGTTGGTTGATGGAACACACCACGGAATCGTGCGGGAGCAC
AGTAGTGCAGATGTTGCGGTCTTCGCTGGACTCAAGAATCTTGCATGCCA
CTTTGGTGTTCTTGTTGACGGGCCCAGGGAAGGAGGTGGGCGTGGCCGTC
AGAAAGACGGGCGCCTGCAAACCTCTTGGGTTCGCGAGGAAACGTGTCTC
GTTTCAGCTCGTGGGTGTTTCTGCAGACGTGGCGGGCTGCTGTCATTTTT
TTTTGTTTGTCGTGTTGCCCTTGGTAGTATTGGCCAATGCGGGGGCAGCA
GCTGCAGCAGCAGCAGCAGCAGCAGCAGCAATAACAAGGACTACTATCAT
AATGCAGGACGCAGACCAACGCGACAACCGAGTATGAAGAGGCGATGCCA
TCCTGCAACGAGCTTCGTCGCGATTCCAAGCAATGTCTTTGCTTCTGCTG
GGTTGTGGTAGTGCAAGAACTTACCATTGTTTCCCCGCCACTAGAAGAAA
TTGTCCGTTACGGTACTCAACTGATATGATTTGCATCCACGAAGGTAGAA
GTTAATCACTGCTGGTACAAATTTGTCGCGATGAAGTCGGCAACAACCGA
CAGAGCTGACTGGAAATATAAAGCGACACCCGCGTATGATCAGTTGACTG
TCATCGTAACACCAACGTTTTCTGTCCCACTCCGCCCGAAATCGCTTTGT
TCCACGTATAATGCTGCCGGGCAACACAGGATGGCCGTCGGTCCGGAGGA
AGGCAAGAGCGGCTTCGCGTCCGGGAGAGGGCGACCCATCGTGGTTGCCG
ATTCTTCGCCCACTGAGGTTCTGCGCCGGCCGCGGGGCTCCAGCATGGGC
GGTGCGGACAGTAAGGTGTTCGTACCATCGGCGGCGGCCTCGGTAGCAGC
AGAAGCAGCGGCTGCTGCGGCGGCGCCGGCGCCGGCGGAGGCGGTGGCAG
CGCCTTCGCCGCAGCAGTTCGAGGATGCCGATTGAGCATGCGGCGGTTTT
CTTGGACCCAAGAATATGAAACTGCTTTTTTTAACGCTAGGCGAAACACT
TATGTAGCATGATAATTGAAAGGTGCCGTTTAACAATGCCATCCGCACTG
TACCATGAGTGCAGCTTGAAAGGCGGGGAAATGTGTGCTTAATAGACGGT
ACCTGACGCGCCGCAGGCTTCTTGTGTGCGGCCAAGGTTTCGATGTCGCT
TGGTGTCTATGCTCGTTCGCTTTGGTTTGGTTTTAGTTGTTCGTGTTAGA
GTCTGGTGGGAGAGATTGAAGGATGGTTGGTTGTGCGTGAGACAAGGAAG
GCGAGTGCGATCGGATGTTGTTTGCGAAGTTGGTTTGTGGCGCGACCATG
GTTCTGGCCGTTTCTTCCGTGTGTTCAGTCGTGTATGTTTTGGCTTGTCG
TTGCTGGTACGTCGTGCATTTGGTGAATGTGCACGAGAAGAGAGCTCTTT
TCGTCTTGCCTTCCTCATTTCTACAAGCCCACGGTTGTTTTCATCCGGCT
GTGTTGCGACACTGCAACACGAGACCAGCTTTGAGGATCCCCGGGAGGGC
TTGACCGTTAATTTTTTTCGCGATGGGTATGCTCCCGTAAAATCTCAAGG
TTGCACGGGGCGGTTCTTGTGGTCAGTGTTCTGCTCTTTCAAGAACCCTG
AGTCTTGATTAATTGTGAGGGTATTGCTTGTGAGCAGGCCGGCATTCTTC
CTGATAAATGTAGTCTGATGCTTGTGCGATAATTCTAGCCAGTCCGTGCG
ATACCCGCCTGCTGTCTATTCAAGTGATAGCCAATGATTTTCGGCCTCAC
CAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11539:373..4977-

>mRNA_Ecto-sp13_S_contig11539.1344.1 ID=mRNA_Ecto-sp13_S_contig11539.1344.1|Name=mRNA_Ecto-sp13_S_contig11539.1344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11539:373..4977- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCTCCCGCTCCCTGACGGAGCTGGAGCTCGAGCGAACCGCGGGCGC
GAATGGCGGGGCAAGCAGCCGGGGCGGAGGGAAACCTCGGAACTCCCGGG
AGAACCAGCACCATCATGAACACGAAGCCTCACGAGAAGAAGAGGGTAGC
AGCGGGGACGGGGGGGAAGCGGCTCCAACGACGCGCAAGCCTCGGTCCGT
GTCTAACGTCGACGCCCTTTTCAGCAGCAGCACCGGCGGGAGCGGCGGAG
GGATTGAGAACGGATCCCCACCCCGCCATACCATGGGCAGCGCTGGTGAT
GGCCTCCCGCGGAAGGGCGTGGTGCAGACGCTGTCTTCGGAGGGATGGTC
GTGGATCAAGAAGGATGGCCAAGGTTCCCGCAAGAGCGGCAACCGCATCC
CCTTCGTGATGGGGGATGTTGTGATGAAGGACGGCGAGCAGCGGCAGGCC
TTGCAAAAGGGCGACCACGTGGAGTACCGCGTCTGGAAAGACACGGAAGG
CAGGTCGATGGCCGTAAGAGTTGAGCGGGCCAAGGAGAGACCGCGGCCGG
CTGGAGGCGGGGTGGGCAGTGGCGGCCGTTCCACCCAGGCACATTTTCGG
ATGGCCGTCGGTCCGGAGGAAGGCAAGAGCGGCTTCGCGTCCGGGAGAGG
GCGACCCATCGTGGTTGCCGATTCTTCGCCCACTGAGGTTCTGCGCCGGC
CGCGGGGCTCCAGCATGGGCGGTGCGGACAGTAAGGTGTTCGTACCATCG
GCGGCGGCCTCGGTAGCAGCAGAAGCAGCGGCTGCTGCGGCGGCGCCGGC
GCCGGCGGAGGCGGTGGCAGCGCCTTCGCCGCAGCAGTTCGAGGATGCCG
ATTGA
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