prot_Ecto-sp13_S_contig1147.1290.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1147.1290.1
Unique Name	prot_Ecto-sp13_S_contig1147.1290.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	137

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A453FVP7_AEGTS (Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453FVP7_AEGTS)

HSP 1 Score: 209 bits (531), Expect = 1.640e-67
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 0

Query:   10 LAPLAPSTSQHTNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            L P  P +    +  LSS+S+QA MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 LPPTNPRSKTPKSPFLSSYSEQAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 128

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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: R0FQR2_9BRAS (Histone H4 n=1 Tax=Capsella rubella TaxID=81985 RepID=R0FQR2_9BRAS)

HSP 1 Score: 203 bits (517), Expect = 4.440e-65
Identity = 112/138 (81.16%), Postives = 119/138 (86.23%), Query Frame = 0

Query:    4 SQDYLCLAPLAPSTSQHTN-----QTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            S DY+   PL+  TS   N     +  S FS++  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   14 SYDYITNTPLSHFTSHLNNFNSFRKAKSKFSEK--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 149

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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 202 bits (514), Expect = 5.810e-65
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 0

Query:   25 LSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            +SS    +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   14 VSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: UPI001E1CAA61 (uncharacterized protein LOC109746046 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CAA61)

HSP 1 Score: 206 bits (525), Expect = 1.430e-64
Identity = 112/136 (82.35%), Postives = 117/136 (86.03%), Query Frame = 0

Query:   12 PLAPSTSQHTNQTLSSF-----------SQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            P APS+++HTN   SS            S  A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:  139 PFAPSSNRHTNHHHSSNPTFFLAARAKGSSSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 274

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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: UPI0018996A9E (histone H4-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI0018996A9E)

HSP 1 Score: 201 bits (512), Expect = 2.400e-64
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 0

Query:   10 LAPLAPSTSQHTNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            + P AP  +     T S  +  A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 VGPRAPGNTAFAFLTRSEAAATAEMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 147

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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: UPI00167F827B (histone H3.1t-like n=3 Tax=Euteleostomi TaxID=117571 RepID=UPI00167F827B)

HSP 1 Score: 204 bits (518), Expect = 3.400e-64
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 0

Query:   21 TNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            TN +LS    Q NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:  108 TNLSLSLARTQFNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 223

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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A2P5DRN5_PARAD (Histone H4 (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5DRN5_PARAD)

HSP 1 Score: 200 bits (509), Expect = 3.590e-64
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 0

Query:   29 SQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            S++A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   20 SRRAKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 127

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A453J6R2_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J6R2_AEGTS)

HSP 1 Score: 200 bits (509), Expect = 4.810e-64
Identity = 105/116 (90.52%), Postives = 108/116 (93.10%), Query Frame = 0

Query:   21 TNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            +NQ      QQ  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 SNQIPQRRPQQPAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A452ZB17_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZB17_AEGTS)

HSP 1 Score: 200 bits (508), Expect = 4.930e-64
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 0

Query:   20 HTNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            H + + +     A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   10 HISSSAARRGSSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126

[Close]

BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A2I4GCX1_JUGRE (Histone H4 n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4GCX1_JUGRE)

HSP 1 Score: 200 bits (508), Expect = 5.090e-64
Identity = 107/122 (87.70%), Postives = 110/122 (90.16%), Query Frame = 0

Query:   20 HTNQTLSSF-----SQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
            +TNQ    F     S  A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 YTNQRNPKFETLDLSLSAEMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 127

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A453FVP7_AEGTS	1.640e-67	86.61	Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=...	[more]
R0FQR2_9BRAS	4.440e-65	81.16	Histone H4 n=1 Tax=Capsella rubella TaxID=81985 Re...	[more]
A0A3L6V663_9STRA	5.810e-65	94.64	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
UPI001E1CAA61	1.430e-64	82.35	uncharacterized protein LOC109746046 n=1 Tax=Aegil...	[more]
UPI0018996A9E	2.400e-64	84.25	histone H4-like n=1 Tax=Dermacentor silvarum TaxID...	[more]
UPI00167F827B	3.400e-64	92.24	histone H3.1t-like n=3 Tax=Euteleostomi TaxID=1175...	[more]
A0A2P5DRN5_PARAD	3.590e-64	95.37	Histone H4 (Fragment) n=1 Tax=Parasponia andersoni...	[more]
A0A453J6R2_AEGTS	4.810e-64	90.52	Histone H4 n=2 Tax=Aegilops tauschii subsp. strang...	[more]
A0A452ZB17_AEGTS	4.930e-64	88.03	Histone H4 n=2 Tax=Aegilops tauschii subsp. strang...	[more]
A0A2I4GCX1_JUGRE	5.090e-64	87.70	Histone H4 n=1 Tax=Juglans regia TaxID=51240 RepID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 110..122 score: 90.05 coord: 38..49 score: 95.59 coord: 122..133 score: 97.79 coord: 73..93 score: 93.56 coord: 95..109 score: 91.96 coord: 53..72 score: 93.38
IPR001951	Histone H4	SMART	SM00417	h44	coord: 49..123 e-value: 1.8E-29 score: 113.9
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 35..136 e-value: 6.2E-60 score: 201.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 20..133
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 70..129 e-value: 4.5E-8 score: 33.2
None	No IPR available	PANTHER	PTHR10484:SF171		coord: 21..136
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 21..136
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 48..52

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1147	contig	Ecto-sp13_S_contig1147:2064..2474 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1147.1290.1	mRNA_Ecto-sp13_S_contig1147.1290.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1147 2064..2474 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1147.1290.1 ID=prot_Ecto-sp13_S_contig1147.1290.1|Name=mRNA_Ecto-sp13_S_contig1147.1290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
ARTSQDYLCLAPLAPSTSQHTNQTLSSFSQQANMSGRGKGGKGLGKGGAK
RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI
RDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001951	Histone_H4
IPR009072	Histone-fold
IPR035425	CENP-T/H4_C
IPR019809	Histone_H4_CS