mRNA_Ecto-sp13_S_contig1147.1290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1147.1290.1
Unique NamemRNA_Ecto-sp13_S_contig1147.1290.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A453FVP7_AEGTS (Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453FVP7_AEGTS)

HSP 1 Score: 209 bits (531), Expect = 1.640e-67
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 1 
Query:   28 LAPLAPSTSQHTNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            L P  P +    +  LSS+S+QA MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 LPPTNPRSKTPKSPFLSSYSEQAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 128
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: R0FQR2_9BRAS (Histone H4 n=1 Tax=Capsella rubella TaxID=81985 RepID=R0FQR2_9BRAS)

HSP 1 Score: 203 bits (517), Expect = 4.440e-65
Identity = 112/138 (81.16%), Postives = 119/138 (86.23%), Query Frame = 1 
Query:   10 SQDYLCLAPLAPSTSQHTN-----QTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            S DY+   PL+  TS   N     +  S FS++  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   14 SYDYITNTPLSHFTSHLNNFNSFRKAKSKFSEK--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 149
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 202 bits (514), Expect = 5.810e-65
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1 
Query:   73 LSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            +SS    +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   14 VSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: UPI001E1CAA61 (uncharacterized protein LOC109746046 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CAA61)

HSP 1 Score: 206 bits (525), Expect = 1.430e-64
Identity = 112/136 (82.35%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:   34 PLAPSTSQHTNQTLSSF-----------SQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            P APS+++HTN   SS            S  A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:  139 PFAPSSNRHTNHHHSSNPTFFLAARAKGSSSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 274
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: UPI0018996A9E (histone H4-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI0018996A9E)

HSP 1 Score: 201 bits (512), Expect = 2.400e-64
Identity = 107/127 (84.25%), Postives = 112/127 (88.19%), Query Frame = 1 
Query:   28 LAPLAPSTSQHTNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            + P AP  +     T S  +  A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 VGPRAPGNTAFAFLTRSEAAATAEMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 147
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: UPI00167F827B (histone H3.1t-like n=3 Tax=Euteleostomi TaxID=117571 RepID=UPI00167F827B)

HSP 1 Score: 204 bits (518), Expect = 3.400e-64
Identity = 107/116 (92.24%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:   61 TNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            TN +LS    Q NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:  108 TNLSLSLARTQFNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 223
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A2P5DRN5_PARAD (Histone H4 (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5DRN5_PARAD)

HSP 1 Score: 200 bits (509), Expect = 3.590e-64
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:   85 SQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            S++A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   20 SRRAKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 127
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A453J6R2_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J6R2_AEGTS)

HSP 1 Score: 200 bits (509), Expect = 4.810e-64
Identity = 105/116 (90.52%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:   61 TNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            +NQ      QQ  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 SNQIPQRRPQQPAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A452ZB17_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZB17_AEGTS)

HSP 1 Score: 200 bits (508), Expect = 4.930e-64
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:   58 HTNQTLSSFSQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            H + + +     A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   10 HISSSAARRGSSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126
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BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Match: A0A2I4GCX1_JUGRE (Histone H4 n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4GCX1_JUGRE)

HSP 1 Score: 200 bits (508), Expect = 5.090e-64
Identity = 107/122 (87.70%), Postives = 110/122 (90.16%), Query Frame = 1 
Query:   58 HTNQTLSSF-----SQQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 408
            +TNQ    F     S  A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 YTNQRNPKFETLDLSLSAEMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1147.1290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453FVP7_AEGTS1.640e-6786.61Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=... [more]
R0FQR2_9BRAS4.440e-6581.16Histone H4 n=1 Tax=Capsella rubella TaxID=81985 Re... [more]
A0A3L6V663_9STRA5.810e-6594.64Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
UPI001E1CAA611.430e-6482.35uncharacterized protein LOC109746046 n=1 Tax=Aegil... [more]
UPI0018996A9E2.400e-6484.25histone H4-like n=1 Tax=Dermacentor silvarum TaxID... [more]
UPI00167F827B3.400e-6492.24histone H3.1t-like n=3 Tax=Euteleostomi TaxID=1175... [more]
A0A2P5DRN5_PARAD3.590e-6495.37Histone H4 (Fragment) n=1 Tax=Parasponia andersoni... [more]
A0A453J6R2_AEGTS4.810e-6490.52Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A452ZB17_AEGTS4.930e-6488.03Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A2I4GCX1_JUGRE5.090e-6487.70Histone H4 n=1 Tax=Juglans regia TaxID=51240 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1147contigEcto-sp13_S_contig1147:2064..2474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start0
Seed ortholog score207.2
Seed ortholog evalue4.8e-51
Seed eggNOG ortholog51511.ENSCSAVP00000017227
Model size411
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045087,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0051707,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0098542,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs3A1HI@33154,3BQAA@33208,3D789@33213,48EQW@7711,COG2036@1,KOG1744@1,KOG1744@2759,KOG3467@2759
Cds size411
COG Functional cat.B
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462601.407066-CDS-Ecto-sp13_S_contig1147:2063..24741681462601.407066-CDS-Ecto-sp13_S_contig1147:2063..2474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1147 2064..2474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1147.1290.1prot_Ecto-sp13_S_contig1147.1290.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1147 2064..2474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1147.1290.1

>prot_Ecto-sp13_S_contig1147.1290.1 ID=prot_Ecto-sp13_S_contig1147.1290.1|Name=mRNA_Ecto-sp13_S_contig1147.1290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
ARTSQDYLCLAPLAPSTSQHTNQTLSSFSQQANMSGRGKGGKGLGKGGAK
RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI
RDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*
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mRNA from alignment at Ecto-sp13_S_contig1147:2064..2474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1147.1290.1 ID=mRNA_Ecto-sp13_S_contig1147.1290.1|Name=mRNA_Ecto-sp13_S_contig1147.1290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1147:2064..2474- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCGGACGTCACAGGACTACCTTTGCCTCGCTCCTCTCGCACCTTCGAC
CTCACAACACACCAACCAAACTCTCTCATCCTTCTCTCAACAAGCAAACA
TGTCTGGACGCGGCAAGGGCGGTAAGGGTCTGGGCAAGGGTGGTGCCAAG
CGCCACCGCAAGGTACTCCGCGACAACATCCAGGGCATCACCAAGCCCGC
GATCCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGCATCTCGGGACTCA
TCTACGAGGAGACCCGTGGCGTGCTCAAGGTGTTCCTCGAGAACGTCATC
CGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTGACAGC
CATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGTT
TCGGCGGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1147:2064..2474-

>mRNA_Ecto-sp13_S_contig1147.1290.1 ID=mRNA_Ecto-sp13_S_contig1147.1290.1|Name=mRNA_Ecto-sp13_S_contig1147.1290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1147:2064..2474- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCGGACGTCACAGGACTACCTTTGCCTCGCTCCTCTCGCACCTTCGAC
CTCACAACACACCAACCAAACTCTCTCATCCTTCTCTCAACAAGCAAACA
TGTCTGGACGCGGCAAGGGCGGTAAGGGTCTGGGCAAGGGTGGTGCCAAG
CGCCACCGCAAGGTACTCCGCGACAACATCCAGGGCATCACCAAGCCCGC
GATCCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGCATCTCGGGACTCA
TCTACGAGGAGACCCGTGGCGTGCTCAAGGTGTTCCTCGAGAACGTCATC
CGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTGACAGC
CATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGTT
TCGGCGGCTAA
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