prot_Ecto-sp13_S_contig1130.1157.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1130.1157.1
Unique Name	prot_Ecto-sp13_S_contig1130.1157.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	379

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1130.1157.1 vs. uniprot
Match: D8LJV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV6_ECTSI)

HSP 1 Score: 518 bits (1334), Expect = 9.670e-182
Identity = 275/312 (88.14%), Postives = 277/312 (88.78%), Query Frame = 0

Query:   73 STSGGSGRFPSHDRESFARTLNDEELDEVWKGLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSGVFPKLTANVLERHDQLADDDGSGGDESGGAA------NVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLLAAIVSYGVLVLWVAHLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHRHCKPLNTDDAQTQQRXXXXXXXXSAPHACALPAHTLLLLAVVVCLGLHASAFLFCENDMLLVFEEETLDPLCDDSSLTLPLILDAIVLSVASLKASSLCWAWVLN 378
            STSGGSGRFPSHDRESFARTLN+EELDEVWKGLGEGVSQRGCGSEVGVG DLADTTPPSPNGTGVSG FPKLTANVLERHDQLADD                  NVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLL AIVSYGVLVLWV HLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHR CKPLN DDAQTQ+R        SAPHACALPAHTLLLLAVVVCLGLHASA LFCE DMLLVFEEETLDPLCDDSSL LPLILDAIVLSVASLKASSLCWAWVLN
Sbjct:   75 STSGGSGRFPSHDRESFARTLNNEELDEVWKGLGEGVSQRGCGSEVGVGFDLADTTPPSPNGTGVSGAFPKLTANVLERHDQLADDXXXXXXXXXXXXXXXXXXNVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLLGAIVSYGVLVLWVGHLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHRRCKPLNADDAQTQRRQRGRER--SAPHACALPAHTLLLLAVVVCLGLHASALLFCEKDMLLVFEEETLDPLCDDSSLALPLILDAIVLSVASLKASSLCWAWVLN 384

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BLAST of mRNA_Ecto-sp13_S_contig1130.1157.1 vs. uniprot
Match: A0A6H5JGU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU1_9PHAE)

HSP 1 Score: 526 bits (1356), Expect = 2.770e-180
Identity = 277/311 (89.07%), Postives = 281/311 (90.35%), Query Frame = 0

Query:   72 GSTSGGSGRFPSHDRESFARTLNDEELDEVWKGLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSGVFPKLTANVLERHDQLADDDGSGGDESGG----AANVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLLAAIVSYGVLVLWVAHLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHRHCKPLNTDDAQTQQRXXXXXXXXSAPHACALPAHTLLLLAVVVCLGLHASAFLFCENDMLLVFEEETLDPLCDDSSLTLPLILDAIVLSVASLKASSLCWAWVLN 378
            GSTSGGSGRFPSHDRESFARTLNDEELDEVW GLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSG FPKLTANVLERHDQLADD              AANVVPIPK+LMERSAEDMENGTSSKKSSGNG+GNQPASGVQQQEKTLL AI SYGVLVLWVAHLVFNVLLLWRVVADEQVWALCF+PGVLGILLSVN CRKSHRHCKPLNTDDAQTQQR        SAPHAC+LP HTLLLLAVVVCLGLHASAFLFCE DMLLVFEEETLDPLCDDSSLTLPLILD IVLSVASLKASSLCWAWVLN
Sbjct:  403 GSTSGGSGRFPSHDRESFARTLNDEELDEVWNGLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSGAFPKLTANVLERHDQLADDXXXXXXXXXXXXXXAANVVPIPKQLMERSAEDMENGTSSKKSSGNGSGNQPASGVQQQEKTLLGAIASYGVLVLWVAHLVFNVLLLWRVVADEQVWALCFVPGVLGILLSVNRCRKSHRHCKPLNTDDAQTQQRQQGLGR--SAPHACSLPVHTLLLLAVVVCLGLHASAFLFCEKDMLLVFEEETLDPLCDDSSLTLPLILDGIVLSVASLKASSLCWAWVLN 711

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1130.1157.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1130.1157.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LJV6_ECTSI	9.670e-182	88.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JGU1_9PHAE	2.770e-180	89.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 354..377
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 216..243
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 269..300
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 328..353
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..215
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 301..327
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 378..378
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 249..268
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 244..248
None	No IPR available	TMHMM	TMhelix		coord: 216..238
None	No IPR available	TMHMM	TMhelix		coord: 248..265
None	No IPR available	TMHMM	TMhelix		coord: 300..322
None	No IPR available	TMHMM	TMhelix		coord: 355..377

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1130	contig	Ecto-sp13_S_contig1130:4514..7201 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1130.1157.1	mRNA_Ecto-sp13_S_contig1130.1157.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1130 4501..7556 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1130.1157.1 ID=prot_Ecto-sp13_S_contig1130.1157.1|Name=mRNA_Ecto-sp13_S_contig1130.1157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=379bp
MSLVGDDEQELPPPHNNNGDKASPRGGGTAGSTPQRACWGGGLPPTCGPA
AARAAAAAAAAATTAGARGGAGSTSGGSGRFPSHDRESFARTLNDEELDE
VWKGLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSGVFPKLTANVLE
RHDQLADDDGSGGDESGGAANVVPIPKKLMERSAEDMENGTSSKKSSGNG
NGNQPASGVQQQEKTLLAAIVSYGVLVLWVAHLVFNVLLLWRVVADEQVW
ALCFLPGVLGILLSVNSCRKSHRHCKPLNTDDAQTQQRQRRRQRRRSAPH
ACALPAHTLLLLAVVVCLGLHASAFLFCENDMLLVFEEETLDPLCDDSSL
TLPLILDAIVLSVASLKASSLCWAWVLN*