mRNA_Ecto-sp13_S_contig1130.1157.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1130.1157.1
Unique NamemRNA_Ecto-sp13_S_contig1130.1157.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1130.1157.1 vs. uniprot
Match: D8LJV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV6_ECTSI)

HSP 1 Score: 518 bits (1335), Expect = 6.580e-180
Identity = 275/312 (88.14%), Postives = 277/312 (88.78%), Query Frame = 2 
Query:  230 STSGGSGRFPSHDRESFARTLNDEELDEVWKGLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSGVFPKLTANVLERHDQLADDDGSGGDESGGAA------NVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLLAAIVSYGVLVLWVAHLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHRHCKPLNTDDAQTQQRXXXXXXXXSAPHACALPAHTLLLLAVVVCLGLHASAFLFCENDMLLVFEEETLDPLCDDSSLTLPLILDAIVLSVASLKASSLCWAWVLN 1147
            STSGGSGRFPSHDRESFARTLN+EELDEVWKGLGEGVSQRGCGSEVGVG DLADTTPPSPNGTGVSG FPKLTANVLERHDQLADD                  NVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLL AIVSYGVLVLWV HLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHR CKPLN DDAQTQ+R        SAPHACALPAHTLLLLAVVVCLGLHASA LFCE DMLLVFEEETLDPLCDDSSL LPLILDAIVLSVASLKASSLCWAWVLN
Sbjct:   75 STSGGSGRFPSHDRESFARTLNNEELDEVWKGLGEGVSQRGCGSEVGVGFDLADTTPPSPNGTGVSGAFPKLTANVLERHDQLADDXXXXXXXXXXXXXXXXXXNVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLLGAIVSYGVLVLWVGHLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHRRCKPLNADDAQTQRRQRGRER--SAPHACALPAHTLLLLAVVVCLGLHASALLFCEKDMLLVFEEETLDPLCDDSSLALPLILDAIVLSVASLKASSLCWAWVLN 384
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BLAST of mRNA_Ecto-sp13_S_contig1130.1157.1 vs. uniprot
Match: A0A6H5JGU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU1_9PHAE)

HSP 1 Score: 527 bits (1357), Expect = 1.920e-178
Identity = 277/311 (89.07%), Postives = 281/311 (90.35%), Query Frame = 2 
Query:  227 GSTSGGSGRFPSHDRESFARTLNDEELDEVWKGLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSGVFPKLTANVLERHDQLADDDGSGGDESGG----AANVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLLAAIVSYGVLVLWVAHLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHRHCKPLNTDDAQTQQRXXXXXXXXSAPHACALPAHTLLLLAVVVCLGLHASAFLFCENDMLLVFEEETLDPLCDDSSLTLPLILDAIVLSVASLKASSLCWAWVLN 1147
            GSTSGGSGRFPSHDRESFARTLNDEELDEVW GLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSG FPKLTANVLERHDQLADD              AANVVPIPK+LMERSAEDMENGTSSKKSSGNG+GNQPASGVQQQEKTLL AI SYGVLVLWVAHLVFNVLLLWRVVADEQVWALCF+PGVLGILLSVN CRKSHRHCKPLNTDDAQTQQR        SAPHAC+LP HTLLLLAVVVCLGLHASAFLFCE DMLLVFEEETLDPLCDDSSLTLPLILD IVLSVASLKASSLCWAWVLN
Sbjct:  403 GSTSGGSGRFPSHDRESFARTLNDEELDEVWNGLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSGAFPKLTANVLERHDQLADDXXXXXXXXXXXXXXAANVVPIPKQLMERSAEDMENGTSSKKSSGNGSGNQPASGVQQQEKTLLGAIASYGVLVLWVAHLVFNVLLLWRVVADEQVWALCFVPGVLGILLSVNRCRKSHRHCKPLNTDDAQTQQRQQGLGR--SAPHACSLPVHTLLLLAVVVCLGLHASAFLFCEKDMLLVFEEETLDPLCDDSSLTLPLILDGIVLSVASLKASSLCWAWVLN 711
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1130.1157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJV6_ECTSI6.580e-18088.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGU1_9PHAE1.920e-17889.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1130contigEcto-sp13_S_contig1130:4501..7556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1505
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009830.1
Cds size1137
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462591.0641754-UTR-Ecto-sp13_S_contig1130:4500..45131681462591.0641754-UTR-Ecto-sp13_S_contig1130:4500..4513Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1130 4501..4513 +
1681462591.096223-UTR-Ecto-sp13_S_contig1130:7201..75561681462591.096223-UTR-Ecto-sp13_S_contig1130:7201..7556Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1130 7202..7556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462591.0725865-CDS-Ecto-sp13_S_contig1130:4513..52321681462591.0725865-CDS-Ecto-sp13_S_contig1130:4513..5232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1130 4514..5232 +
1681462591.080326-CDS-Ecto-sp13_S_contig1130:6253..65211681462591.080326-CDS-Ecto-sp13_S_contig1130:6253..6521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1130 6254..6521 +
1681462591.0882878-CDS-Ecto-sp13_S_contig1130:7051..72011681462591.0882878-CDS-Ecto-sp13_S_contig1130:7051..7201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1130 7052..7201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1130.1157.1prot_Ecto-sp13_S_contig1130.1157.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1130 4514..7201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1130.1157.1

>prot_Ecto-sp13_S_contig1130.1157.1 ID=prot_Ecto-sp13_S_contig1130.1157.1|Name=mRNA_Ecto-sp13_S_contig1130.1157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=379bp
MSLVGDDEQELPPPHNNNGDKASPRGGGTAGSTPQRACWGGGLPPTCGPA
AARAAAAAAAAATTAGARGGAGSTSGGSGRFPSHDRESFARTLNDEELDE
VWKGLGEGVSQRGCGSEVGVGVDLADTTPPSPNGTGVSGVFPKLTANVLE
RHDQLADDDGSGGDESGGAANVVPIPKKLMERSAEDMENGTSSKKSSGNG
NGNQPASGVQQQEKTLLAAIVSYGVLVLWVAHLVFNVLLLWRVVADEQVW
ALCFLPGVLGILLSVNSCRKSHRHCKPLNTDDAQTQQRQRRRQRRRSAPH
ACALPAHTLLLLAVVVCLGLHASAFLFCENDMLLVFEEETLDPLCDDSSL
TLPLILDAIVLSVASLKASSLCWAWVLN*
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mRNA from alignment at Ecto-sp13_S_contig1130:4501..7556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1130.1157.1 ID=mRNA_Ecto-sp13_S_contig1130.1157.1|Name=mRNA_Ecto-sp13_S_contig1130.1157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1130:4501..7556+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGCACCAGACATGAGCCTGGTTGGAGACGACGAGCAAGAGCTGCCTC
CTCCGCACAACAACAACGGCGACAAAGCCTCGCCACGCGGCGGCGGAACG
GCCGGGAGCACACCCCAGCGAGCCTGCTGGGGGGGCGGCCTTCCACCTAC
GTGCGGGCCGGCGGCGGCTCGGGCGGCAGCGGCAGCGGCGGCAGCGGCAA
CAACAGCAGGAGCGCGGGGAGGGGCGGGGTCGACGTCGGGCGGCAGCGGC
CGATTCCCTTCCCACGACCGCGAGAGCTTCGCGCGCACCCTGAATGACGA
GGAGCTGGACGAGGTGTGGAAGGGACTCGGGGAAGGGGTGAGCCAGAGGG
GCTGCGGGTCGGAGGTCGGGGTGGGCGTCGACCTCGCGGACACCACGCCG
CCGAGCCCGAACGGAACGGGGGTCTCGGGCGTTTTCCCCAAACTCACCGC
CAACGTCCTCGAGCGACACGACCAGCTCGCGGACGACGACGGCAGCGGCG
GCGACGAGAGCGGGGGGGCGGCAAACGTCGTGCCCATCCCGAAGAAGTTG
ATGGAGAGGTCGGCGGAGGACATGGAGAACGGGACCTCCTCCAAGAAGAG
CAGCGGCAACGGCAACGGCAACCAGCCCGCTAGTGGCGTGCAGCAGCAGG
AGAAGACGCTGCTGGCAGCGATCGTGTCGTACGGCGTCCTGGTCCTGTGG
GTGGCGCACCTCGTGTTCAATGTCTTGTTACTGTGAGTTGTAGTTGCCGT
GGCTGCCTTTTGTTTTCGGGTTGCACCATGATGATGAGCAAATGAACAAA
GCCCGTTATTCGTAAGCGTACGTATGTTGCCCCTTGGATCTCTCTCCGCT
TTACTTCTACCGAGTACGCATATATTTCTTGCCAAAAGATCTTTTGAAGT
TTGAAGCCAGCCTACCCTTCTCAACGTCGTCCTGACTCAGATGATCCGTC
GAAAGTCATCCTCCAACCTTGAAATAGCATGTGTTGGGAAGGGGTCTCGG
ATTGCAGTTGATTGTGAGTCACTCAATTTGTGCCTTTGATTTATGTGTAA
GTGCGTGGCAAGCAGCACCTTAAACTGAAATTTAACCTAACCTGAAATTT
CTCTCACGCAATCGTTCTTGGCAGGAGCTTTTGTTTTCGACTTTGACTTG
TGTGTGTTGGCCACAGCAGCAGAGCTACGTAGGTCTTGCCGGGCTGGTGC
GTCGCTGCGTACCTCCGCATCTGGATTGTAGCCAAACCCGTTCCTTTCAT
AACAGCCGTGCTCAGTTAGGACTGCCTCCAAGCTAGCTCGAAACGGAACG
CACGATTAATTCCGATGAATGCCCCCATTCCCTTGTTTCAGCATCTGCAG
TTTCCCGGCACGGGCGCGGTTACAAAATAGGTCTCTGTCGTAAAATGAAA
CTGATGCGCCGTTGAATTTTCAACTTTGGTACGCCAGAAGGTAGGCGACA
GGGTGGGGGGAGCGGGGCGCACAAACCGGGCAGTGTTGTCAGCAGTTGTT
CTTATGCATCCCCCCCCCCACAAATCCCGTCTTGGGTGGGTGTATGCACA
TGTGCCCTCAGGTGCTGGGTTTCTTTCTCCGACCAAGAAACGCTTATATT
TTCTAAAAGCGTGTACACCCGCCCGAACACATCTAGGCCACAAACAACAT
GTGGATTTGACTGAACCAATGTTGTGCTACTCCTCACTAATGTTGTGCGA
CCCAACCCCTCCCGCCCCCTTCCAATGATGTCGGGCTGTTGCTGCTGTCC
CAGGTGGCGTGTCGTTGCTGATGAGCAAGTCTGGGCCCTCTGCTTCCTCC
CGGGGGTGCTGGGCATCCTCTTGTCGGTCAACAGCTGCCGGAAGAGCCAT
CGCCACTGCAAGCCGTTGAACACCGACGACGCGCAGACGCAGCAGCGGCA
GCGGCGGCGGCAGCGGCGGCGGAGCGCGCCACACGCGTGCGCTCTTCCCG
CCCACACGCTGCTCCTCTTGGCGGTGGTGGTGTGCCTCGGCTTGCACGCG
TCTGCCTTTCTCTTCTGCGAGGTACACTTCGCCTTCTAGTCTTACCGGTG
TTTCCGGTTCTTTTTGTCTGCGAATATATTTGGTGGTGGTGTTGTTGTTT
GTCCGCATCAGAAAGCCGTTCCGGTCTCCTCTCAGTACCTACGAACATCC
GTGCTTGCAGTCTCAACATTGAAAAATCCGTTCCGGTCTCCTATCAGCAC
CTTCGAATATCCTTACTCTTGTGTGTGTGTTGTTTGGCACACCTGCTGTA
GAAGGGCCGAGGCCACCCACCCAATCGCATGAGGGGGGCGGGGGGCGAGG
GGGACTCGCGAGTATATGCAGCGTTGTTCTTTGATTTTGTTGCGGGCTAG
GGAACTTTTACTCAACTTCCAGGCTGTCGACTCCGATGACGCGATTGAAA
CCAGCGCGTTACGAGTGCCAGATCAGCCAGCGTAACAAAACGCCTTGATA
AATACGAAAACCTCCTCGCTTGTGGTCTGTCCGCCCCATCCCCTTAAACC
CCCCCCCCCTTCCCCTTGTTTTTTTTTGTCTTGTCTTTTGCCTCGATTCA
GAACGACATGTTGCTGGTATTCGAGGAGGAGACGCTGGACCCTCTCTGCG
ACGACAGCTCGTTGACGCTCCCCCTTATCCTGGACGCGATTGTTCTTTCG
GTGGCCAGCCTCAAGGCCAGCAGCTTGTGCTGGGCGTGGGTCCTGAACTA
AATAAATATCCAGGAAGAGGGTGGGGCCTTGGCCTCGAAGTGTTGTCCAT
TCCTAGGCCCTTGAGTGTCTTGGTTCTGATCTTGTCTTAAAAGCCCCCCA
AGCCTTCCATACCAAGCCCTGGATGTCTCTGTTCTGATTTGTCTGAAGCC
CGTCCTCGAGCCTTTGGGACTGACTGACTGGTGGGGGTAACGAGTCGCTA
GTAGTGCGCTTGCTTCTTCGTCGATGTGATGTTGTTTTGCTGACCCGCGC
GGGGGGCGCCAGCGAGAAGAGAGCTACGATTAAATAGAACTCCTTTCGAT
GCGTTTCGCTCTCCTCCTCGTTCCTCCTTGTATGCGCGTGCGCGCCTTGT
GTGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1130:4501..7556+

>mRNA_Ecto-sp13_S_contig1130.1157.1 ID=mRNA_Ecto-sp13_S_contig1130.1157.1|Name=mRNA_Ecto-sp13_S_contig1130.1157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1130:4501..7556+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCTGGTTGGAGACGACGAGCAAGAGCTGCCTCCTCCGCACAACAA
CAACGGCGACAAAGCCTCGCCACGCGGCGGCGGAACGGCCGGGAGCACAC
CCCAGCGAGCCTGCTGGGGGGGCGGCCTTCCACCTACGTGCGGGCCGGCG
GCGGCTCGGGCGGCAGCGGCAGCGGCGGCAGCGGCAACAACAGCAGGAGC
GCGGGGAGGGGCGGGGTCGACGTCGGGCGGCAGCGGCCGATTCCCTTCCC
ACGACCGCGAGAGCTTCGCGCGCACCCTGAATGACGAGGAGCTGGACGAG
GTGTGGAAGGGACTCGGGGAAGGGGTGAGCCAGAGGGGCTGCGGGTCGGA
GGTCGGGGTGGGCGTCGACCTCGCGGACACCACGCCGCCGAGCCCGAACG
GAACGGGGGTCTCGGGCGTTTTCCCCAAACTCACCGCCAACGTCCTCGAG
CGACACGACCAGCTCGCGGACGACGACGGCAGCGGCGGCGACGAGAGCGG
GGGGGCGGCAAACGTCGTGCCCATCCCGAAGAAGTTGATGGAGAGGTCGG
CGGAGGACATGGAGAACGGGACCTCCTCCAAGAAGAGCAGCGGCAACGGC
AACGGCAACCAGCCCGCTAGTGGCGTGCAGCAGCAGGAGAAGACGCTGCT
GGCAGCGATCGTGTCGTACGGCGTCCTGGTCCTGTGGGTGGCGCACCTCG
TGTTCAATGTCTTGTTACTGTGGCGTGTCGTTGCTGATGAGCAAGTCTGG
GCCCTCTGCTTCCTCCCGGGGGTGCTGGGCATCCTCTTGTCGGTCAACAG
CTGCCGGAAGAGCCATCGCCACTGCAAGCCGTTGAACACCGACGACGCGC
AGACGCAGCAGCGGCAGCGGCGGCGGCAGCGGCGGCGGAGCGCGCCACAC
GCGTGCGCTCTTCCCGCCCACACGCTGCTCCTCTTGGCGGTGGTGGTGTG
CCTCGGCTTGCACGCGTCTGCCTTTCTCTTCTGCGAGAACGACATGTTGC
TGGTATTCGAGGAGGAGACGCTGGACCCTCTCTGCGACGACAGCTCGTTG
ACGCTCCCCCTTATCCTGGACGCGATTGTTCTTTCGGTGGCCAGCCTCAA
GGCCAGCAGCTTGTGCTGGGCGTGGGTCCTGAACTAA
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