prot_Ecto-sp13_S_contig11245.1108.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11245.1108.1
Unique Nameprot_Ecto-sp13_S_contig11245.1108.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length142
Homology
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 2.660e-74
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 0
Query:    1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 142
            TSFLPAERTAREGKVTRLSTPLAEAG GGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK    +G  ++  E
Sbjct:  952 TSFLPAERTAREGKVTRLSTPLAEAGNGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSE 1093          
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 4.140e-72
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0
Query:    1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 129
            TSFLPAERTAREGKVTRLSTPLAEAGKG SSGSSR+GGRRKAQA LRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK
Sbjct:  861 TSFLPAERTAREGKVTRLSTPLAEAGKGSSSGSSRKGGRRKAQASLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 989          
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A6A0A349_HAELA (DNA repair endonuclease UVH1 (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A349_HAELA)

HSP 1 Score: 133 bits (335), Expect = 6.910e-38
Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 0
Query:   36 RGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFI 134
            RGG  KAQ P +VVVD+REF S LP +LHQQGFELVPL I VGDYVL+P +CVERK+L DL  S++SGRLY+Q EAM KHYK PVLLIEF  D  RPF+
Sbjct:    9 RGGAAKAQ-PRKVVVDMREFMSSLPAVLHQQGFELVPLTIEVGDYVLSPTMCVERKALPDLVSSLASGRLYSQAEAMCKHYKTPVLLIEFEGD--RPFL 104          
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: UPI001F5D44C3 (DNA repair endonuclease UVH1 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D44C3)

HSP 1 Score: 137 bits (344), Expect = 1.140e-34
Identity = 63/106 (59.43%), Postives = 84/106 (79.25%), Query Frame = 0
Query:   37 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 142
            GGR+  +  ++V+VD+REF S LPN+LHQ+G  ++P+ + VGDYVL+P ICVERKS+SDLFQS +SGRLYNQVE M+++YK+PVLLIEF+ DK   F    EV D+
Sbjct:  747 GGRKPTEKEMQVIVDMREFMSSLPNVLHQKGIRIIPVTLEVGDYVLSPLICVERKSISDLFQSFASGRLYNQVETMIRYYKIPVLLIEFSQDKSFSFQSASEVGDD 852          
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A3S3NAZ6_9MAGN (DNA repair endonuclease UVH1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NAZ6_9MAGN)

HSP 1 Score: 130 bits (327), Expect = 1.730e-34
Identity = 59/106 (55.66%), Postives = 82/106 (77.36%), Query Frame = 0
Query:   37 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 142
            GGR+ A+   +V+VD+REF S LPN+LHQ+G  ++P+ + VGDYVL+P ICVERKS++DLF S +SGRLYNQVE M ++Y++PVLLIEF+ DK   F    ++ D+
Sbjct:   49 GGRKAAERETQVIVDIREFMSSLPNVLHQKGMRIIPVTLEVGDYVLSPLICVERKSIADLFSSFASGRLYNQVETMARYYRIPVLLIEFSQDKSFSFQSASDIGDD 154          
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A1Y1I3K2_KLENI (Structure-specific endonuclease ERCC1-XPF n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3K2_KLENI)

HSP 1 Score: 136 bits (342), Expect = 2.150e-34
Identity = 63/104 (60.58%), Postives = 84/104 (80.77%), Query Frame = 0
Query:   26 GKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 129
            G GG+  S+R+ G R+    ++VVVD+REF S LP++LHQQG ++VP+ + VGDY+L+P++CVERKSL+DLFQS  SGRLYNQ EAM ++YK PVLLIEF+ DK
Sbjct:  955 GPGGTGISTRKAGGRQKDRAMQVVVDMREFNSSLPSVLHQQGMKIVPVTLEVGDYILSPEVCVERKSLADLFQSFGSGRLYNQAEAMTRYYKTPVLLIEFDQDK 1058          
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A8J4VB27_9ROSI (ERCC4 domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VB27_9ROSI)

HSP 1 Score: 129 bits (324), Expect = 3.510e-34
Identity = 56/106 (52.83%), Postives = 83/106 (78.30%), Query Frame = 0
Query:   37 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 142
            GGR++ +  ++V+VD+REF S LPN+LHQ+G  ++P+ + VGDY+++P ICVERKS+ DLF S +SGRLY+QVE M+++YK+PVLLIEF+ DK   F    ++ D+
Sbjct:   35 GGRKEIEREMQVIVDMREFMSSLPNILHQRGMHIIPVTLEVGDYIISPLICVERKSIQDLFMSFTSGRLYHQVETMVRYYKIPVLLIEFSQDKSFSFQSASDIGDD 140          
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: UPI000B8CC7E5 (DNA repair endonuclease UVH1-like isoform X3 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CC7E5)

HSP 1 Score: 127 bits (319), Expect = 4.900e-34
Identity = 55/106 (51.89%), Postives = 84/106 (79.25%), Query Frame = 0
Query:   37 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 142
            GGR++A+  ++V+VD+REF S LPN+LH +G  ++P+ + VGDY+L+P +CVERKS+ DLF S +SGRLY+QVE+M+++Y++PVLLIEF+ DK   F    ++ D+
Sbjct:   41 GGRKEAEKEMQVIVDVREFMSSLPNMLHLKGMRIIPVTLEVGDYILSPLLCVERKSIQDLFSSFTSGRLYHQVESMVRYYRIPVLLIEFSQDKSFSFQSASDIGDD 146          
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A5J9WL85_9POAL (ERCC4 domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WL85_9POAL)

HSP 1 Score: 135 bits (339), Expect = 5.360e-34
Identity = 62/106 (58.49%), Postives = 84/106 (79.25%), Query Frame = 0
Query:   37 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 142
            GGR+     ++V+VD+REF S LPN+LHQ+G ++VP+ + VGDYVL+P ICVERKS++DLFQS +SGRLYNQVE M+++YK+PVLLIEF+ DK   F    E+ D+
Sbjct:  750 GGRKAPDKEMQVIVDMREFMSSLPNVLHQKGIQIVPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQVETMVRYYKIPVLLIEFSQDKSFSFQSASEIGDD 855          
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A8J5W2E0_ZIZPA (ERCC4 domain-containing protein (Fragment) n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5W2E0_ZIZPA)

HSP 1 Score: 135 bits (339), Expect = 5.590e-34
Identity = 59/106 (55.66%), Postives = 85/106 (80.19%), Query Frame = 0
Query:   37 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 142
            GGR+ ++  ++V+VD+REF S LPN+LHQ+G  ++P+ + +GDYVL+P ICVERKS++DLFQS +SGRLYNQ+E M+++YK+PVLLIEF+ DK   F    E+ D+
Sbjct:  582 GGRKPSEKEMQVIVDMREFMSSLPNVLHQKGIRIIPITLEIGDYVLSPLICVERKSIADLFQSFASGRLYNQIETMVRYYKIPVLLIEFSQDKSFSFQSASEIGDD 687          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEA6_9PHAE2.660e-7491.55ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FH45_ECTSI4.140e-7297.67ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6A0A349_HAELA6.910e-3869.70DNA repair endonuclease UVH1 (Fragment) n=1 Tax=Ha... [more]
UPI001F5D44C31.140e-3459.43DNA repair endonuclease UVH1 n=1 Tax=Lolium rigidu... [more]
A0A3S3NAZ6_9MAGN1.730e-3455.66DNA repair endonuclease UVH1 n=1 Tax=Cinnamomum mi... [more]
A0A1Y1I3K2_KLENI2.150e-3460.58Structure-specific endonuclease ERCC1-XPF n=1 Tax=... [more]
A0A8J4VB27_9ROSI3.510e-3452.83ERCC4 domain-containing protein n=1 Tax=Castanea m... [more]
UPI000B8CC7E54.900e-3451.89DNA repair endonuclease UVH1-like isoform X3 n=1 T... [more]
A0A5J9WL85_9POAL5.360e-3458.49ERCC4 domain-containing protein n=1 Tax=Eragrostis... [more]
A0A8J5W2E0_ZIZPA5.590e-3455.66ERCC4 domain-containing protein (Fragment) n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006166ERCC4 domainSMARTSM00891ERCC4_2coord: 47..127
e-value: 1.2E-20
score: 84.6
IPR006166ERCC4 domainPFAMPF02732ERCC4coord: 50..126
e-value: 3.5E-15
score: 56.6
NoneNo IPR availableGENE3D3.40.50.10130coord: 43..139
e-value: 6.0E-34
score: 118.8
NoneNo IPR availablePANTHERPTHR10150DNA REPAIR ENDONUCLEASE XPFcoord: 30..129
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 45..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11245contigEcto-sp13_S_contig11245:4109..5339 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11245.1108.1mRNA_Ecto-sp13_S_contig11245.1108.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11245 4109..5339 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11245.1108.1 ID=prot_Ecto-sp13_S_contig11245.1108.1|Name=mRNA_Ecto-sp13_S_contig11245.1108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVV
DLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSM
SSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006166ERCC4_domain
IPR011335Restrct_endonuc-II-like