mRNA_Ecto-sp13_S_contig11245.1108.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE) HSP 1 Score: 249 bits (637), Expect = 2.660e-74 Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 1
Query: 1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 426
TSFLPAERTAREGKVTRLSTPLAEAG GGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK +G ++ E
Sbjct: 952 TSFLPAERTAREGKVTRLSTPLAEAGNGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGSGDLTSE 1093
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI) HSP 1 Score: 243 bits (620), Expect = 4.140e-72 Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 1
Query: 1 TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 387
TSFLPAERTAREGKVTRLSTPLAEAGKG SSGSSR+GGRRKAQA LRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK
Sbjct: 861 TSFLPAERTAREGKVTRLSTPLAEAGKGSSSGSSRKGGRRKAQASLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 989
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A6A0A349_HAELA (DNA repair endonuclease UVH1 (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A349_HAELA) HSP 1 Score: 133 bits (335), Expect = 6.910e-38 Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 1
Query: 106 RGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFI 402
RGG KAQ P +VVVD+REF S LP +LHQQGFELVPL I VGDYVL+P +CVERK+L DL S++SGRLY+Q EAM KHYK PVLLIEF D RPF+
Sbjct: 9 RGGAAKAQ-PRKVVVDMREFMSSLPAVLHQQGFELVPLTIEVGDYVLSPTMCVERKALPDLVSSLASGRLYSQAEAMCKHYKTPVLLIEFEGD--RPFL 104
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: UPI001F5D44C3 (DNA repair endonuclease UVH1 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D44C3) HSP 1 Score: 137 bits (344), Expect = 1.140e-34 Identity = 63/106 (59.43%), Postives = 84/106 (79.25%), Query Frame = 1
Query: 109 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 426
GGR+ + ++V+VD+REF S LPN+LHQ+G ++P+ + VGDYVL+P ICVERKS+SDLFQS +SGRLYNQVE M+++YK+PVLLIEF+ DK F EV D+
Sbjct: 747 GGRKPTEKEMQVIVDMREFMSSLPNVLHQKGIRIIPVTLEVGDYVLSPLICVERKSISDLFQSFASGRLYNQVETMIRYYKIPVLLIEFSQDKSFSFQSASEVGDD 852
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A3S3NAZ6_9MAGN (DNA repair endonuclease UVH1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NAZ6_9MAGN) HSP 1 Score: 130 bits (327), Expect = 1.730e-34 Identity = 59/106 (55.66%), Postives = 82/106 (77.36%), Query Frame = 1
Query: 109 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 426
GGR+ A+ +V+VD+REF S LPN+LHQ+G ++P+ + VGDYVL+P ICVERKS++DLF S +SGRLYNQVE M ++Y++PVLLIEF+ DK F ++ D+
Sbjct: 49 GGRKAAERETQVIVDIREFMSSLPNVLHQKGMRIIPVTLEVGDYVLSPLICVERKSIADLFSSFASGRLYNQVETMARYYRIPVLLIEFSQDKSFSFQSASDIGDD 154
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A1Y1I3K2_KLENI (Structure-specific endonuclease ERCC1-XPF n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3K2_KLENI) HSP 1 Score: 136 bits (342), Expect = 2.150e-34 Identity = 63/104 (60.58%), Postives = 84/104 (80.77%), Query Frame = 1
Query: 76 GKGGSSGSSRRGGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 387
G GG+ S+R+ G R+ ++VVVD+REF S LP++LHQQG ++VP+ + VGDY+L+P++CVERKSL+DLFQS SGRLYNQ EAM ++YK PVLLIEF+ DK
Sbjct: 955 GPGGTGISTRKAGGRQKDRAMQVVVDMREFNSSLPSVLHQQGMKIVPVTLEVGDYILSPEVCVERKSLADLFQSFGSGRLYNQAEAMTRYYKTPVLLIEFDQDK 1058
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A8J4VB27_9ROSI (ERCC4 domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VB27_9ROSI) HSP 1 Score: 129 bits (324), Expect = 3.510e-34 Identity = 56/106 (52.83%), Postives = 83/106 (78.30%), Query Frame = 1
Query: 109 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 426
GGR++ + ++V+VD+REF S LPN+LHQ+G ++P+ + VGDY+++P ICVERKS+ DLF S +SGRLY+QVE M+++YK+PVLLIEF+ DK F ++ D+
Sbjct: 35 GGRKEIEREMQVIVDMREFMSSLPNILHQRGMHIIPVTLEVGDYIISPLICVERKSIQDLFMSFTSGRLYHQVETMVRYYKIPVLLIEFSQDKSFSFQSASDIGDD 140
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: UPI000B8CC7E5 (DNA repair endonuclease UVH1-like isoform X3 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CC7E5) HSP 1 Score: 127 bits (319), Expect = 4.900e-34 Identity = 55/106 (51.89%), Postives = 84/106 (79.25%), Query Frame = 1
Query: 109 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 426
GGR++A+ ++V+VD+REF S LPN+LH +G ++P+ + VGDY+L+P +CVERKS+ DLF S +SGRLY+QVE+M+++Y++PVLLIEF+ DK F ++ D+
Sbjct: 41 GGRKEAEKEMQVIVDVREFMSSLPNMLHLKGMRIIPVTLEVGDYILSPLLCVERKSIQDLFSSFTSGRLYHQVESMVRYYRIPVLLIEFSQDKSFSFQSASDIGDD 146
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A5J9WL85_9POAL (ERCC4 domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WL85_9POAL) HSP 1 Score: 135 bits (339), Expect = 5.360e-34 Identity = 62/106 (58.49%), Postives = 84/106 (79.25%), Query Frame = 1
Query: 109 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 426
GGR+ ++V+VD+REF S LPN+LHQ+G ++VP+ + VGDYVL+P ICVERKS++DLFQS +SGRLYNQVE M+++YK+PVLLIEF+ DK F E+ D+
Sbjct: 750 GGRKAPDKEMQVIVDMREFMSSLPNVLHQKGIQIVPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQVETMVRYYKIPVLLIEFSQDKSFSFQSASEIGDD 855
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Match: A0A8J5W2E0_ZIZPA (ERCC4 domain-containing protein (Fragment) n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5W2E0_ZIZPA) HSP 1 Score: 135 bits (339), Expect = 5.590e-34 Identity = 59/106 (55.66%), Postives = 85/106 (80.19%), Query Frame = 1
Query: 109 GGRRKAQAPLRVVVDLREFRSVLPNLLHQQGFELVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKVRPFIGWPEVVDE 426
GGR+ ++ ++V+VD+REF S LPN+LHQ+G ++P+ + +GDYVL+P ICVERKS++DLFQS +SGRLYNQ+E M+++YK+PVLLIEF+ DK F E+ D+
Sbjct: 582 GGRKPSEKEMQVIVDMREFMSSLPNVLHQKGIRIIPITLEIGDYVLSPLICVERKSIADLFQSFASGRLYNQIETMVRYYKIPVLLIEFSQDKSFSFQSASEIGDD 687 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11245.1108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11245.1108.1 >prot_Ecto-sp13_S_contig11245.1108.1 ID=prot_Ecto-sp13_S_contig11245.1108.1|Name=mRNA_Ecto-sp13_S_contig11245.1108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp TSFLPAERTAREGKVTRLSTPLAEAGKGGSSGSSRRGGRRKAQAPLRVVVback to top mRNA from alignment at Ecto-sp13_S_contig11245:4109..5339- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11245.1108.1 ID=mRNA_Ecto-sp13_S_contig11245.1108.1|Name=mRNA_Ecto-sp13_S_contig11245.1108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11245:4109..5339- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11245:4109..5339- >mRNA_Ecto-sp13_S_contig11245.1108.1 ID=mRNA_Ecto-sp13_S_contig11245.1108.1|Name=mRNA_Ecto-sp13_S_contig11245.1108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11245:4109..5339- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |