prot_Ecto-sp13_S_contig1118.1039.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1118.1039.1
Unique Nameprot_Ecto-sp13_S_contig1118.1039.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length271
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1118.1039.1 vs. uniprot
Match: A0A835YWC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.560e-13
Identity = 74/234 (31.62%), Postives = 97/234 (41.45%), Query Frame = 0 
Query:   34 REYETTHKTAFSAPRIVSRGSSSHTGWSNAFWKQRRADPVANPGLLNMTQACTMQQAMRDRPVDDRAFGSLVGR----TRPIASLMNRAPEAETTTRAAFGVPKRACRTGHRGLHVPKAPPGGRVESRTEMEDTFPDDRGAILRKGSYRPVGERFMQGEEPAQSTEAQRSWVYSHDPVVKYHDEGVPLARPPKGLSLDVGEGPRA-ATANNKRSRSITLEREPATEKGTSVWID 262
            R Y TT+ T          G  S T  S A  K    D V     ++M Q  +M + +R RPV D  F S V      TRP     ++     T  + A G+            H+P+        SRT           A     S+RP+GER+    +P  +T AQRSW+YS DPVVKY  EGVP          D G      A  + +R RSIT   +P   +G +VW D
Sbjct:   34 RSYVTTYSTQSKTC-----GQGSPTPCSRAA-KLEAIDSVG----VDMVQHHSMTEVLRPRPVVDAGFNSAVAGEMQGTRPQGGAQSKVFCTTTMAQQAGGIQGDG--------HMPEQ------TSRTAC--------AAAAGTRSHRPLGERYNADADPHCNTAAQRSWLYSLDPVVKYQQEGVPALEEGPCWVGDAGNALALHADGSARRVRSITARNDPMVTQGVTVWND 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1118.1039.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YWC0_9STRA1.560e-1331.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 11..12
NoneNo IPR availableCOILSCoilCoilcoord: 30..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1118contigEcto-sp13_S_contig1118:5921..11558 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1118.1039.1mRNA_Ecto-sp13_S_contig1118.1039.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1118 5372..11620 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1118.1039.1 ID=prot_Ecto-sp13_S_contig1118.1039.1|Name=mRNA_Ecto-sp13_S_contig1118.1039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
MALRTYGSDTLNXXXXXXXXXXXXXXXXXLRATREYETTHKTAFSAPRIV
SRGSSSHTGWSNAFWKQRRADPVANPGLLNMTQACTMQQAMRDRPVDDRA
FGSLVGRTRPIASLMNRAPEAETTTRAAFGVPKRACRTGHRGLHVPKAPP
GGRVESRTEMEDTFPDDRGAILRKGSYRPVGERFMQGEEPAQSTEAQRSW
VYSHDPVVKYHDEGVPLARPPKGLSLDVGEGPRAATANNKRSRSITLERE
PATEKGTSVWIDWHIAPGEA*
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