|
|
Homology
BLAST of mRNA_Ecto-sp13_S_contig1118.1039.1 vs. uniprot
Match: A0A835YWC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC0_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 9.550e-13 Identity = 74/234 (31.62%), Postives = 97/234 (41.45%), Query Frame = 3
Query: 162 REYETTHKTAFSAPRIVSRGSSSHTGWSNAFWKQRRADPVANPGLLNMTQACTMQQAMRDRPVDDRAFGSLVGR----TRPIASLMNRAPEAETTTRAAFGVPKRACRTGHRGLHVPKAPPGGRVESRTEMEDTFPDDRGAILRKGSYRPVGERFMQGEEPAQSTEAQRSWVYSHDPVVKYHDEGVPLARPPKGLSLDVGEGPRA-ATANNKRSRSITLEREPATEKGTSVWID 848
R Y TT+ T G S T S A K D V ++M Q +M + +R RPV D F S V TRP ++ T + A G+ H+P+ SRT A S+RP+GER+ +P +T AQRSW+YS DPVVKY EGVP D G A + +R RSIT +P +G +VW D
Sbjct: 34 RSYVTTYSTQSKTC-----GQGSPTPCSRAA-KLEAIDSVG----VDMVQHHSMTEVLRPRPVVDAGFNSAVAGEMQGTRPQGGAQSKVFCTTTMAQQAGGIQGDG--------HMPEQ------TSRTAC--------AAAAGTRSHRPLGERYNADADPHCNTAAQRSWLYSLDPVVKYQQEGVPALEEGPCWVGDAGNALALHADGSARRVRSITARNDPMVTQGVTVWND 235
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1424 |
| Exons | 9 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-23_003595.1 |
| Cds size | 813 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462581.920775-UTR-Ecto-sp13_S_contig1118:5371..5920 | 1681462581.920775-UTR-Ecto-sp13_S_contig1118:5371..5920 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1118 5372..5920 - |
| 1681462582.0316906-UTR-Ecto-sp13_S_contig1118:11558..11620 | 1681462582.0316906-UTR-Ecto-sp13_S_contig1118:11558..11620 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1118 11559..11620 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462581.9306176-CDS-Ecto-sp13_S_contig1118:5920..6026 | 1681462581.9306176-CDS-Ecto-sp13_S_contig1118:5920..6026 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1118 5921..6026 - |
| 1681462581.9402947-CDS-Ecto-sp13_S_contig1118:6641..6789 | 1681462581.9402947-CDS-Ecto-sp13_S_contig1118:6641..6789 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1118 6642..6789 - |
| 1681462581.9491932-CDS-Ecto-sp13_S_contig1118:7510..7643 | 1681462581.9491932-CDS-Ecto-sp13_S_contig1118:7510..7643 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1118 7511..7643 - |
| 1681462581.9598722-CDS-Ecto-sp13_S_contig1118:8170..8262 | 1681462581.9598722-CDS-Ecto-sp13_S_contig1118:8170..8262 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1118 8171..8262 - |
| 1681462581.9704132-CDS-Ecto-sp13_S_contig1118:8684..8737 | 1681462581.9704132-CDS-Ecto-sp13_S_contig1118:8684..8737 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1118 8685..8737 - |
| 1681462581.9815776-CDS-Ecto-sp13_S_contig1118:9142..9216 | 1681462581.9815776-CDS-Ecto-sp13_S_contig1118:9142..9216 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1118 9143..9216 - |
| 1681462581.9934773-CDS-Ecto-sp13_S_contig1118:9965..10073 | 1681462581.9934773-CDS-Ecto-sp13_S_contig1118:9965..10073 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1118 9966..10073 - |
| 1681462582.0055387-CDS-Ecto-sp13_S_contig1118:10419..10481 | 1681462582.0055387-CDS-Ecto-sp13_S_contig1118:10419..10481 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1118 10420..10481 - |
| 1681462582.0204973-CDS-Ecto-sp13_S_contig1118:11521..11558 | 1681462582.0204973-CDS-Ecto-sp13_S_contig1118:11521..11558 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1118 11522..11558 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1118.1039.1 >prot_Ecto-sp13_S_contig1118.1039.1 ID=prot_Ecto-sp13_S_contig1118.1039.1|Name=mRNA_Ecto-sp13_S_contig1118.1039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
MALRTYGSDTLNXXXXXXXXXXXXXXXXXLRATREYETTHKTAFSAPRIV SRGSSSHTGWSNAFWKQRRADPVANPGLLNMTQACTMQQAMRDRPVDDRA FGSLVGRTRPIASLMNRAPEAETTTRAAFGVPKRACRTGHRGLHVPKAPP GGRVESRTEMEDTFPDDRGAILRKGSYRPVGERFMQGEEPAQSTEAQRSW VYSHDPVVKYHDEGVPLARPPKGLSLDVGEGPRAATANNKRSRSITLERE PATEKGTSVWIDWHIAPGEA* back to topmRNA from alignment at Ecto-sp13_S_contig1118:5372..11620- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1118.1039.1 ID=mRNA_Ecto-sp13_S_contig1118.1039.1|Name=mRNA_Ecto-sp13_S_contig1118.1039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1118:5372..11620- (Ectocarpus species13 EcNAP12_S_4_19m) GTACTGCGTATGCTAGGCTGCATTGCTTCGCGGCAGCCTTGCAGCAGTGG
AGCTCGCAAGTGATGGCTCTCCGGACCTACGGAAGTGACACCCTCAACGG
TGCGTGTAGCTTCCGTCTTTCCCCGTGTGGCACCGTCACAAACGAACGGC
GGCAGTTCACTTCGACGAGTGAACTACTGCTGAACACTGTACACCCACCC
ACCGTACAGACACGACGGCTGTGCAGAGCTAGCAGTCTGCGTGTTATGTA
TTTTCGGCCACATTAAGTTACACGACAGCTGTGCAGAGCTAGCAGTCTGC
GTGTTAAGAATTTTCGGGCACATTCAGTGATGGCAAGGGCTGTATGTGCA
GAGTACGGCGGTGCGTACATGTTTTGACGACCGCTGGGAGGTTCAAGGCA
ACAACACCGCACGGTCTGTCATTGATTGCCGTCAACGGTTGTTAGCCGCC
TAGACTAAATATTTTATTTTTTTCGTCGTCAAATGAGTAGGACAGCGTAG
TGATACCGACGCAGGCCGGGGAAAGGGGCACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTAGGGCCAC
CGTTGGCTAACCTTTCAGGTCGTGGGAGGAGGCACTCTTGCAAGGGCCGT
GTTGCGGATGCTGCTGCTCGCAATTTGGGGTGTGCAACCCCTGCAACAAA
CAATTTTGCCCGAACCCAGACTGATAATGTTGTCAGAATGGGAGGGCAAC
AGATTTGCGTCTATGTCTCTTCCACGACCTCTACAGTACATACTGTTCGA
AAGTACCGCCATTGCGCAATGAAAGGCTAGGGGTGCAGACGTGTGTCATC
CACATGCTATTGATGACACCACCAGATCCTTGTGCTGCTTATGCCCGCGA
TTTTCCCGTCGTCAACACCGCCCTTTTGAATACTGCTACCCTTCTAGCGG
GAGTATGAAACAACTCACAAGACAGCGTTTTCGGCGCCGCGAATTGTGTC
CCGGGGGTCATCGAGCCATACTGGCTGGAGCAATGCCTTTTGGAAGCAAC
GACGGGTAAGTAACCCATGTCATAGGTTTCGTGGCCACGCATTCCCGACG
TAGGTTAGCGTTATGCGGAAACAAACAATTTCATATCGTGGCGCCCCCGG
CCTGCTTTCCCCCCGAACTTCAAGTACGACAGCAGTGATATTTTCGTATC
TTTGGATAAGATGTAGCGCTTCTGGCGGCACGGATTCCCACCCGAGCTGT
AAGGTTCCCTCAAACCTGAGTCTCGGTGTTGCGGTTGCTATAAGCGAGAC
GCCTCGATGGCAGAGCAGTTACATTCCATAACAACGGCACCAAGTACAGG
AGGTGTACCTGAGGGCGAAGGGTCATGTACCATAGTGATCCACCTCGTAC
CTCGTGCCCCTCATGTCAGTCGTTGTGGGAACGGTGATGTAGGCCGTCGT
GTATCACATGCCGTAGAGATGGGTAATCCTTCGAAGGGAATTCCAACTTC
TCCATGAGATGCATTTGCCCGGGAGTTCGTTGAATAGAGCCTCGCATAGG
TCTTCTTTTGGGTGGACTCGATGCCTGCCTCAGCCGAAGCGCTGAAAGTG
AAAAAAATCGTCGTGCGAGCTATCGCCTGTAGACCGCACCCCGCAGAATC
TCGCAGTACCACTCTCGTCCAAGTTTTCTGTCCACATGCAGCACCTCCCC
CCCCCGATACTCGCAGATTATCTCTGCCCTCTGCCGCAAGTGCGTTTCGC
GGTCTTTTGCCGACGCTACCCTCTGATACTCTTGTCTTCTGGCGTTGCCA
TCAGGCAGATCCCGTCGCCAATCCTGGACTGCTGAACATGACGCAAGCCT
GCACGATGCAGCAGGCCATGCGCGACAGGTGATGCCGCGATTCACGCCAA
CGAGCAAAAAATACGCCGCGGCGGAACAAGAGTTGACACCCCCGGCTGAA
GTGCCGCTTTCCTAGGAAATTACAGTTTGACGTACCGACTACCTTTCGGA
AACCTCCGGCTCCTGAACGCGGCGGACGATAGCTTCACCATGGTCGTGAC
AACGGCCACATAGGCTTTATTTCGCCCGTGTGTAGTGCATCTCAAATGCT
GGCTTCAAGGAGAGGACGTTTGACCTCCTGTTAACCAGCCTTTGTTTTTG
GCGGCGAGTACTCCAGCAAGTACAGAAAAGGTCAAGTTGGCATGCCTGTT
GCAGGACATTGCTTTCGTCCACAGTACGTTCGTTGATACGTCCTGACCAT
TGCCCATCTATCCCCCACCCCCCCCTTCTCCAGACCAGTCGACGATCGAG
CTTTCGGCTCCCTGGTAGGCAGAACCCGGCCTATCGGTGAGCATGGCAAC
ACCAACGACGGCTTTGGTGGATCAGCGCCCCCACCTTGTCTGGCCTCTGC
ACGAAAATCACTAACGCACTCCCTGCCCAGGAACGTAGAGAGTTGGCCGT
CGACGTCGGGGTTGTGTCGTAGCACCTAGCAACAGATGTCTTAGCCCGGT
GGTTACGGGAGGTGACAAAAGTGCAAGGCCTTGGCATGCCACCCCTCAAG
TCTTTGCCTGCAGCCGCGCTCAGCTCCTCCAGCGAGAAAGAAACGATGTC
CAGGTTTGATCGTCTAGCGAAGTAAGCCTTTCGCCTTCCGCCCTCGTCGT
CGTCGTCCGGTAAGCATGAAGTAGCATGCTCGATGCATGCATACAGAGAT
TTCTCCCCGTGTCTTACGTCCGCTCACCACGCCTTTCCCCTCCCGTCTGC
CCGGCAAGCCTCTCTGATGAATCGAGCACCTGAGGCGGAAACGACGACGC
GCGCGGCGTTCGGAGTGCCGAAGCGCGCATGCAGGACGGGACACAGAGGG
GTAAGCGAGCGGCCTGCACAGAGAAAGAAAAAGGGCCCGCACGGCAAAAC
GGCCGTAGCCAGCAGCTGAGGAGTACGTGAGAAGAGGCAAAGCAGAAGAT
CGACTTTCACGTCGCTCGTTACAGGAATTGGTTGGGAGCCTTACGAAACA
CCGAAGCGTGCCTAGACTCTGCGTTGCTCAGGAGGGCGCTTTCTTCCGAT
GAAAACGAAAGCACGCGTGGAAGGGGCCCACATAGTGAACGCCGAGGACA
GTGCTGTTGGCCGGGAAAGCTCGACTGTACACGTGTCTAGGAAGAAAGCC
CTGACTGTAACGTGTATCTCGACTACGGACACAGCAACACTTCCCCGACC
GCCATGATCGTACGCCGTTTGCGCGGAATCACGCTGTAGTACCTGGCAAG
TCATTGCTGACGTCGTAGTCGTAGTCGTCGTCGTCATTGTTTATGCGCAG
CTGATTACAGTTTGTGCCCCTGAAGAAACCCTGTTGCCAGCGTCGTGGCT
TACTGTTGCATTCCACGTGCGTGGCAGCTACACGTACCAAAAGCCCCTCC
AGGTGGACGGGTAGAGTCGAGGACAGAAATGGAGGACACCTTCCCTGACG
ACCGAGGCGCCATACTGAGGAAAGGCAGCTACCGGCCAGTCGGCGAGAGA
TTCATGCAAGGTACAGCATTCCTGCGTAGTCGGCGAAAGGTGCATGAGAG
GTGCAGCAGTCCTGTGTAGTCGGCGAGAGATCCATGCAAGGTGTGCATGA
GTGCTTCGTAGAATCATTGGAAAATGGACCAAAACACTTACGGTTATAGT
CGTCAGTCGTGTTGCCGCGGGGGAAGATCGCCATGTCAAAAATATAGAAC
CTTTTATCTCGTGGTGATGGGATATTGATCAAAGGTCCGTATGCACTCCA
GAAAGGAGGGGATACGAGAGACAGATGCTTCCGAACCCTCTTCTTAGGTC
CACGAGGCCGAGAGAGAGAGTCGGCATCCACGGGAAAAATGCGAAACTCA
CGTCCGAAATTCTCCCGAAACAGATGAAGACTATCCCCCTAACGTCTGGT
ACCTCCATGCTCCCTACCGCTTCGACCCACCATACACGTTGTCAAGAACG
TTTTAGCATTAGTGGGGGACCGACTGGTGTAATAAAAGAAAAATGTTCGA
AGCTTTACGACGGGAAACGTGGGATTCCGGTTGGGCTCCAGGGCGAACTC
GGCCCCCAGGTGGGATTGGGTGTGGTTGACGGAGAGATTCCACCCGCAAG
GATTGAGGTTTCAGCGCCATCAGGTGCAACCCCCCGATCGTGTTTCAACC
AATCGTCAAGCGTAAGTGCCCCCCTCCCCCCCCCCCGATGCGTTCGCCGT
TGCGTGCTTCGGTCACGCGCACGCGGCACAGGCGAAGAACCCGCCCAGAG
CACGGAGGCCCAGCGCTCGTGGGTGTACTCGCACGACCCAGTAGTCAAGT
ACCACGACGAAGGAGTGCCGCTCGCGCGCCCTCCCAAGGGGCTCAGCCTT
GACGTTGGAGAAGGGCCTAGAGCCGCAACGTAAGCGGGGAGGGTAGGGTT
TTGGTTCGATGAACGCCGATGCCCTTTGGAAAAGTGAAGGCGGCTCTCAT
AGTACCATTCCGCACATGCTGAACCGGCGTGTGTTGTACGCTGCAAAAGC
GGTTGGATGAAAGAGTTTAGGATACACCACGAAAACCGCACTCCGTAAGT
CAGCGAGTGTAGTTAAGGCTGGCTTTAGTGAAGACGTTGGGCGTTTGAGT
GTGGATTAGTATTTGTTTGTTTGATGTCGGTCGCCGCTATTCTGTCGCAA
GGACCTCTCGTTGTTGGGCGTTCGTTTACTCACGTTCATTTCTGACAGCG
ATTTCTCACCTTACGACCACGAGCCATTGGGATTGACCTGTAGCAACAAA
ACCGTTGAGGCGGCGACCCATTGGGATGGACCTGTAGCGAAAAACCGTTG
ACGATGATACGTTGTCGCACCGCCCCACAAATCTCGCTCTTTGTCGGCAG
TGCCGGTCCCAGGATGCAATCCCCACCCTCCAAAAACGCTTCCACCACCC
GCAAGCCCAAACCGTTGCCCCCATGTGCCTCAGGGAGGGCAGACAGAGAC
AAACTAATGATATCATGTGTTGGCCTTGTGTGCACCGTCCACAGAGCAAA
CAACAAGCGTTCCCGGAGCATTACCCTGGAGCGCGAGCCCGCCACCGAGA
AGGGGACCAGCGTGTGGATCGACTGGCACATCGCCCCTGGGGAAGCGTAG
AGCGCCGTGGGTGCCGCAAGCGGCATAAACACCACGACCAAGAGGCAAAC
AACTCCGTTGCGCGACACACAAAAAGCAACAACAGCTACAGTAGTGCAGT
GTCGTAAGTCCAAGGCGGCAGTGTAGACCCGTAGTGTCTGGCCTGGACGT
TTAAAGCGCCGATGGTTTCGTGGCGAAGTTTGTAGACTGATGTCGAGCCC
ACGACGCCAACGTTGACAACAAAACATGTGTGGTAAAATTTAAAGGACTA
CCGTAAATGGCAGAGGGATGGCACCGATCGGGGAGATGGCTCCGGGATGC
AGGCATCACACAACACCGCCGAGCACCAGAAGGCCCGCTGTGTGTATTTT
ATTGTGCATGGCACTGGTCGTAGAGATCGAACCGGGGTTGAGAAATGAAA
AACGAGGAAGACATATCAGAAAAAGCTACAGTGTCTTGCCATCGCTCCAC
CCTTTAGTCTGTGGTACTGCTGTGTAATCTACTGCATACAGTGTACGGGT
GCATGCTACAGTACTGCTGTAGGCTGTTGTCTTTCGCCGATTCCCAGTC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1118:5372..11620- >mRNA_Ecto-sp13_S_contig1118.1039.1 ID=mRNA_Ecto-sp13_S_contig1118.1039.1|Name=mRNA_Ecto-sp13_S_contig1118.1039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1118:5372..11620- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGCTCTCCGGACCTACGGAAGTGACACCCTCAACGNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTAGGGCCACCC GGGAGTATGAAACAACTCACAAGACAGCGTTTTCGGCGCCGCGAATTGTG TCCCGGGGGTCATCGAGCCATACTGGCTGGAGCAATGCCTTTTGGAAGCA ACGACGGGCAGATCCCGTCGCCAATCCTGGACTGCTGAACATGACGCAAG CCTGCACGATGCAGCAGGCCATGCGCGACAGACCAGTCGACGATCGAGCT TTCGGCTCCCTGGTAGGCAGAACCCGGCCTATCGCCTCTCTGATGAATCG AGCACCTGAGGCGGAAACGACGACGCGCGCGGCGTTCGGAGTGCCGAAGC GCGCATGCAGGACGGGACACAGAGGGCTACACGTACCAAAAGCCCCTCCA GGTGGACGGGTAGAGTCGAGGACAGAAATGGAGGACACCTTCCCTGACGA CCGAGGCGCCATACTGAGGAAAGGCAGCTACCGGCCAGTCGGCGAGAGAT TCATGCAAGGCGAAGAACCCGCCCAGAGCACGGAGGCCCAGCGCTCGTGG GTGTACTCGCACGACCCAGTAGTCAAGTACCACGACGAAGGAGTGCCGCT CGCGCGCCCTCCCAAGGGGCTCAGCCTTGACGTTGGAGAAGGGCCTAGAG CCGCAACAGCAAACAACAAGCGTTCCCGGAGCATTACCCTGGAGCGCGAG CCCGCCACCGAGAAGGGGACCAGCGTGTGGATCGACTGGCACATCGCCCC TGGGGAAGCGTAG back to top
|