prot_Ecto-sp13_S_contig11136.995.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig11136.995.1
Unique Name	prot_Ecto-sp13_S_contig11136.995.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	161

Homology

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BLAST of mRNA_Ecto-sp13_S_contig11136.995.1 vs. uniprot
Match: A0A6H5KCQ6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ6_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 6.450e-83
Identity = 147/161 (91.30%), Postives = 149/161 (92.55%), Query Frame = 0

Query:    1 MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATGXXXXXXXXXXLAWAGRVLRSNGSPMLVPALLGVSFNVGVAPVATTWLWLRGMAGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVASAALAAKAASVTGGNEG 161
            MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATGXXXXXXXXXX AWAGR+LRSNGSPMLVPALLGVSFNVGVAPVATTWLWLRG+AGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVA           TGGNEG
Sbjct:  609 MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATGXXXXXXXXXXXAWAGRMLRSNGSPMLVPALLGVSFNVGVAPVATTWLWLRGVAGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVAXXXXXXXXXXXTGGNEG 769

[Close]

BLAST of mRNA_Ecto-sp13_S_contig11136.995.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 7.220e-77
Identity = 142/161 (88.20%), Postives = 144/161 (89.44%), Query Frame = 0

Query:    1 MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATGXXXXXXXXXXLAWAGRVLRSNGSPMLVPALLGVSFNVGVAPVATTWLWLRGMAGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVASAALAAKAASVTGGNEG 161
            MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAAT XXXXXXXXX LAWAGRVLRSNGS MLVPALLGVSFNVGVAPVATTWLWLRG+AGIW+QGHGTME SDRNEIEASRAHRRGSYVGPPASPLAGV             GGNEG
Sbjct:  931 MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATXXXXXXXXXXTLAWAGRVLRSNGSLMLVPALLGVSFNVGVAPVATTWLWLRGVAGIWKQGHGTMETSDRNEIEASRAHRRGSYVGPPASPLAGVXXXXXXXXXXXXXGGNEG 1091

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig11136.995.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig11136.995.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KCQ6_9PHAE	6.450e-83	91.30	Ion_trans domain-containing protein n=1 Tax=Ectoca...	[more]
D8LM43_ECTSI	7.220e-77	88.20	Ankyrin repeat Transient receptor potential channe...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 100..161
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 75..99
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 56..74
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..30
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 31..55
None	No IPR available	TMHMM	TMhelix		coord: 77..99
None	No IPR available	TMHMM	TMhelix		coord: 35..57

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig11136	contig	Ecto-sp13_S_contig11136:142..836 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig11136.995.1	mRNA_Ecto-sp13_S_contig11136.995.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig11136 142..836 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig11136.995.1 ID=prot_Ecto-sp13_S_contig11136.995.1|Name=mRNA_Ecto-sp13_S_contig11136.995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATG
VLWAVSLPLTLAWAGRVLRSNGSPMLVPALLGVSFNVGVAPVATTWLWLR
GMAGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVASAALAA
KAASVTGGNEG