mRNA_Ecto-sp13_S_contig11136.995.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11136.995.1
Unique NamemRNA_Ecto-sp13_S_contig11136.995.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11136.995.1 vs. uniprot
Match: A0A6H5KCQ6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ6_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 6.450e-83
Identity = 147/161 (91.30%), Postives = 149/161 (92.55%), Query Frame = 1 
Query:    1 MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATGXXXXXXXXXXLAWAGRVLRSNGSPMLVPALLGVSFNVGVAPVATTWLWLRGMAGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVASAALAAKAASVTGGNEG 483
            MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATGXXXXXXXXXX AWAGR+LRSNGSPMLVPALLGVSFNVGVAPVATTWLWLRG+AGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVA           TGGNEG
Sbjct:  609 MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATGXXXXXXXXXXXAWAGRMLRSNGSPMLVPALLGVSFNVGVAPVATTWLWLRGVAGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVAXXXXXXXXXXXTGGNEG 769
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BLAST of mRNA_Ecto-sp13_S_contig11136.995.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 7.220e-77
Identity = 142/161 (88.20%), Postives = 144/161 (89.44%), Query Frame = 1 
Query:    1 MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATGXXXXXXXXXXLAWAGRVLRSNGSPMLVPALLGVSFNVGVAPVATTWLWLRGMAGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVASAALAAKAASVTGGNEG 483
            MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAAT XXXXXXXXX LAWAGRVLRSNGS MLVPALLGVSFNVGVAPVATTWLWLRG+AGIW+QGHGTME SDRNEIEASRAHRRGSYVGPPASPLAGV             GGNEG
Sbjct:  931 MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATXXXXXXXXXXTLAWAGRVLRSNGSLMLVPALLGVSFNVGVAPVATTWLWLRGVAGIWKQGHGTMETSDRNEIEASRAHRRGSYVGPPASPLAGVXXXXXXXXXXXXXGGNEG 1091
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11136.995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCQ6_9PHAE6.450e-8391.30Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LM43_ECTSI7.220e-7788.20Ankyrin repeat Transient receptor potential channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11136contigEcto-sp13_S_contig11136:142..836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score260.4
Seed ortholog evalue5.6e-67
Seed eggNOG ortholog2880.D8LM43
Model size484
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Cds size483
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462578.8056755-CDS-Ecto-sp13_S_contig11136:141..4831681462578.8056755-CDS-Ecto-sp13_S_contig11136:141..483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11136 142..483 +
1681462578.8161197-CDS-Ecto-sp13_S_contig11136:695..8361681462578.8161197-CDS-Ecto-sp13_S_contig11136:695..836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11136 696..836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11136.995.1prot_Ecto-sp13_S_contig11136.995.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11136 142..836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11136.995.1

>prot_Ecto-sp13_S_contig11136.995.1 ID=prot_Ecto-sp13_S_contig11136.995.1|Name=mRNA_Ecto-sp13_S_contig11136.995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MRLDSLPSPLNVPQELISCVLWRHKERAKEVFARAVFWLVSGPIAIAATG
VLWAVSLPLTLAWAGRVLRSNGSPMLVPALLGVSFNVGVAPVATTWLWLR
GMAGIWQQGHGTMEMSDRNEIEASRAHRRGSYVGPPASPLAGVASAALAA
KAASVTGGNEG
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mRNA from alignment at Ecto-sp13_S_contig11136:142..836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11136.995.1 ID=mRNA_Ecto-sp13_S_contig11136.995.1|Name=mRNA_Ecto-sp13_S_contig11136.995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=695bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11136:142..836+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCTCGATTCTCTGCCTTCGCCGCTTAACGTTCCCCAGGAACTGAT
CTCGTGCGTCCTCTGGCGACACAAGGAGAGGGCGAAAGAAGTCTTCGCCC
GAGCGGTGTTCTGGCTCGTGTCCGGGCCGATAGCAATAGCCGCTACGGGA
GTCCTCTGGGCCGTGTCGTTGCCGCTGACGCTAGCCTGGGCCGGTCGCGT
GCTTCGATCGAACGGTTCCCCGATGCTAGTCCCGGCCCTGCTCGGGGTTT
CCTTCAACGTGGGAGTGGCGCCCGTCGCCACGACCTGGCTCTGGCTACGA
GGCATGGCGGGAATCTGGCAGCAAGGACATGGGACCATGGAGGTGATGAA
AATGGCACGGAGGATGGGTGTGCGGGGTGATTTGTATCCGGAAATATATG
CTACGTCGGATATTTATCTATGGCGATGATATGCAAGACAGCTGTCGCTT
CGCTCATGCTGAGCCGTAGACCGTAAGGAGGACAGGGAACCGATCCATAT
GCCCACCCAATCGTGAGACGACATCTGGCGGGTTCACGCAACGCACGAAA
ACAGATGAGCGATCGCAACGAGATCGAGGCGTCGAGGGCGCACCGAAGAG
GGAGCTACGTCGGTCCTCCGGCCTCGCCGCTTGCCGGGGTAGCCTCGGCA
GCCCTCGCTGCCAAAGCAGCGAGCGTCACCGGGGGCAACGAAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11136:142..836+

>mRNA_Ecto-sp13_S_contig11136.995.1 ID=mRNA_Ecto-sp13_S_contig11136.995.1|Name=mRNA_Ecto-sp13_S_contig11136.995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11136:142..836+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCTCGATTCTCTGCCTTCGCCGCTTAACGTTCCCCAGGAACTGAT
CTCGTGCGTCCTCTGGCGACACAAGGAGAGGGCGAAAGAAGTCTTCGCCC
GAGCGGTGTTCTGGCTCGTGTCCGGGCCGATAGCAATAGCCGCTACGGGA
GTCCTCTGGGCCGTGTCGTTGCCGCTGACGCTAGCCTGGGCCGGTCGCGT
GCTTCGATCGAACGGTTCCCCGATGCTAGTCCCGGCCCTGCTCGGGGTTT
CCTTCAACGTGGGAGTGGCGCCCGTCGCCACGACCTGGCTCTGGCTACGA
GGCATGGCGGGAATCTGGCAGCAAGGACATGGGACCATGGAGATGAGCGA
TCGCAACGAGATCGAGGCGTCGAGGGCGCACCGAAGAGGGAGCTACGTCG
GTCCTCCGGCCTCGCCGCTTGCCGGGGTAGCCTCGGCAGCCCTCGCTGCC
AAAGCAGCGAGCGTCACCGGGGGCAACGAAGGG
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