prot_Ecto-sp13_S_contig11086.948.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11086.948.1
Unique Nameprot_Ecto-sp13_S_contig11086.948.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length272
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11086.948.1 vs. uniprot
Match: A0A6H5KHE3_9PHAE (VASt domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE3_9PHAE)

HSP 1 Score: 447 bits (1151), Expect = 2.090e-147
Identity = 256/272 (94.12%), Postives = 262/272 (96.32%), Query Frame = 0 
Query:    1 VDASEWQQTTNEGEGGGGAAGSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIRPAADDEGSGSGGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFNMAFLQGMREHLESEGSRGIKRCPSLRDALLSVGSGRRISIDRSLSGRSLLSPFADSEDGXXXXXXXXTGDALLSSNRKVEFGSAKAARSFEPYLPAIRVLSILFILYISLFWVRYQMR 272
            VDASEWQQTT EGEGGGGA GSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIRPAADDEGSGS GKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFN+AFLQGMREHLESEG+RGIKRCPSLRDALLSVGSGRRISIDRSLSGRSLLSPFADSEDGXXXXXXXX GDA LS+NR  + G AKAARSF+ YLPA+RVLSILFILYISLFWVRYQMR
Sbjct:  630 VDASEWQQTTEEGEGGGGATGSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIRPAADDEGSGSAGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFNIAFLQGMREHLESEGARGIKRCPSLRDALLSVGSGRRISIDRSLSGRSLLSPFADSEDGXXXXXXXX-GDAFLSTNRNHD-GFAKAARSFDRYLPAVRVLSILFILYISLFWVRYQMR 899
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BLAST of mRNA_Ecto-sp13_S_contig11086.948.1 vs. uniprot
Match: D8LMW1_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW1_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 1.030e-123
Identity = 207/234 (88.46%), Postives = 211/234 (90.17%), Query Frame = 0 
Query:    1 VDASEWQQTTNEGEGGGGAAGSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIRPAADDEGSGSGGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFNMAFLQGMREHLESEGSRGIKRCPSLRDALLSVGSGRRISIDRSLSGRSLLSPFADSEDGXXXXXXXXTGDALLSSNRKVE 234
            VDA EWQ TT EGEGGGGAAGSTK  XXX            VTRAIRFKTPLHITFMSSPGHVRTLKRQRSR FGGQGCIVETQTTVEDRIPL+DNFHVEDRWIIRPAADDEGSG+GGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFN+AFLQGMREHLESEG+RGIKRCPSLRDALLSVGSGRRIS DRSLSGRSLLSPFADSEDGXXXXXXX TGD LLS NR VE
Sbjct:  636 VDAGEWQHTTKEGEGGGGAAGSTKGDXXXLRGPRPPGGGG-VTRAIRFKTPLHITFMSSPGHVRTLKRQRSRVFGGQGCIVETQTTVEDRIPLNDNFHVEDRWIIRPAADDEGSGTGGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFNIAFLQGMREHLESEGARGIKRCPSLRDALLSVGSGRRISRDRSLSGRSLLSPFADSEDGXXXXXXX-TGDVLLSLNRNVE 867
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11086.948.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHE3_9PHAE2.090e-14794.12VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LMW1_ECTSI1.030e-12388.46VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031968VASt domainPFAMPF16016VAStcoord: 3..147
e-value: 3.1E-18
score: 66.7
IPR031968VASt domainPROSITEPS51778VASTcoord: 1..169
score: 18.953
NoneNo IPR availablePANTHERPTHR47666FAMILY NOT NAMEDcoord: 41..167
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 268..272
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 247..267
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..246
NoneNo IPR availableTMHMMTMhelixcoord: 248..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11086contigEcto-sp13_S_contig11086:50..5390 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11086.948.1mRNA_Ecto-sp13_S_contig11086.948.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11086 50..5392 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11086.948.1 ID=prot_Ecto-sp13_S_contig11086.948.1|Name=mRNA_Ecto-sp13_S_contig11086.948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
VDASEWQQTTNEGEGGGGAAGSTKGDGGGGLRGPGPPGGGGVTRAIRFKT
PLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVE
DRWIIRPAADDEGSGSGGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADV
KSFNMAFLQGMREHLESEGSRGIKRCPSLRDALLSVGSGRRISIDRSLSG
RSLLSPFADSEDGDGGGGGGGTGDALLSSNRKVEFGSAKAARSFEPYLPA
IRVLSILFILYISLFWVRYQMR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031968VASt