mRNA_Ecto-sp13_S_contig11086.948.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11086.948.1
Unique NamemRNA_Ecto-sp13_S_contig11086.948.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11086.948.1 vs. uniprot
Match: A0A6H5KHE3_9PHAE (VASt domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE3_9PHAE)

HSP 1 Score: 447 bits (1151), Expect = 2.090e-147
Identity = 256/272 (94.12%), Postives = 262/272 (96.32%), Query Frame = 1 
Query:    1 VDASEWQQTTNEGEGGGGAAGSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIRPAADDEGSGSGGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFNMAFLQGMREHLESEGSRGIKRCPSLRDALLSVGSGRRISIDRSLSGRSLLSPFADSEDGXXXXXXXXTGDALLSSNRKVEFGSAKAARSFEPYLPAIRVLSILFILYISLFWVRYQMR 816
            VDASEWQQTT EGEGGGGA GSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIRPAADDEGSGS GKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFN+AFLQGMREHLESEG+RGIKRCPSLRDALLSVGSGRRISIDRSLSGRSLLSPFADSEDGXXXXXXXX GDA LS+NR  + G AKAARSF+ YLPA+RVLSILFILYISLFWVRYQMR
Sbjct:  630 VDASEWQQTTEEGEGGGGATGSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIRPAADDEGSGSAGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFNIAFLQGMREHLESEGARGIKRCPSLRDALLSVGSGRRISIDRSLSGRSLLSPFADSEDGXXXXXXXX-GDAFLSTNRNHD-GFAKAARSFDRYLPAVRVLSILFILYISLFWVRYQMR 899
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BLAST of mRNA_Ecto-sp13_S_contig11086.948.1 vs. uniprot
Match: D8LMW1_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW1_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 1.030e-123
Identity = 207/234 (88.46%), Postives = 211/234 (90.17%), Query Frame = 1 
Query:    1 VDASEWQQTTNEGEGGGGAAGSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDRWIIRPAADDEGSGSGGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFNMAFLQGMREHLESEGSRGIKRCPSLRDALLSVGSGRRISIDRSLSGRSLLSPFADSEDGXXXXXXXXTGDALLSSNRKVE 702
            VDA EWQ TT EGEGGGGAAGSTK  XXX            VTRAIRFKTPLHITFMSSPGHVRTLKRQRSR FGGQGCIVETQTTVEDRIPL+DNFHVEDRWIIRPAADDEGSG+GGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFN+AFLQGMREHLESEG+RGIKRCPSLRDALLSVGSGRRIS DRSLSGRSLLSPFADSEDGXXXXXXX TGD LLS NR VE
Sbjct:  636 VDAGEWQHTTKEGEGGGGAAGSTKGDXXXLRGPRPPGGGG-VTRAIRFKTPLHITFMSSPGHVRTLKRQRSRVFGGQGCIVETQTTVEDRIPLNDNFHVEDRWIIRPAADDEGSGTGGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADVKSFNIAFLQGMREHLESEGARGIKRCPSLRDALLSVGSGRRISRDRSLSGRSLLSPFADSEDGXXXXXXX-TGDVLLSLNRNVE 867
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11086.948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHE3_9PHAE2.090e-14794.12VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LMW1_ECTSI1.030e-12388.46VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11086contigEcto-sp13_S_contig11086:50..5392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score387.1
Seed ortholog evalue6.7e-105
Seed eggNOG ortholog2880.D8LMW1
Model size820
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
Cds size816
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462575.2905939-CDS-Ecto-sp13_S_contig11086:49..2081681462575.2905939-CDS-Ecto-sp13_S_contig11086:49..208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11086 50..208 +
1681462575.3007038-CDS-Ecto-sp13_S_contig11086:681..8271681462575.3007038-CDS-Ecto-sp13_S_contig11086:681..827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11086 682..827 +
1681462575.3091967-CDS-Ecto-sp13_S_contig11086:1393..15651681462575.3091967-CDS-Ecto-sp13_S_contig11086:1393..1565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11086 1394..1565 +
1681462575.3190396-CDS-Ecto-sp13_S_contig11086:4514..47391681462575.3190396-CDS-Ecto-sp13_S_contig11086:4514..4739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11086 4515..4739 +
1681462575.3286514-CDS-Ecto-sp13_S_contig11086:5276..53901681462575.3286514-CDS-Ecto-sp13_S_contig11086:5276..5390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11086 5277..5390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11086.948.1prot_Ecto-sp13_S_contig11086.948.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11086 50..5390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11086.948.1

>prot_Ecto-sp13_S_contig11086.948.1 ID=prot_Ecto-sp13_S_contig11086.948.1|Name=mRNA_Ecto-sp13_S_contig11086.948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
VDASEWQQTTNEGEGGGGAAGSTKGDGGGGLRGPGPPGGGGVTRAIRFKT
PLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVE
DRWIIRPAADDEGSGSGGKPRCTATVTWRCVWHKFTVIKGLIEGKCRADV
KSFNMAFLQGMREHLESEGSRGIKRCPSLRDALLSVGSGRRISIDRSLSG
RSLLSPFADSEDGDGGGGGGGTGDALLSSNRKVEFGSAKAARSFEPYLPA
IRVLSILFILYISLFWVRYQMR
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mRNA from alignment at Ecto-sp13_S_contig11086:50..5392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11086.948.1 ID=mRNA_Ecto-sp13_S_contig11086.948.1|Name=mRNA_Ecto-sp13_S_contig11086.948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5343bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11086:50..5392+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGACGCTAGTGAATGGCAGCAGACGACAAACGAAGGAGAAGGAGGGGG
AGGAGCCGCGGGTTCAACGAAAGGAGATGGAGGGGGCGGTCTGCGGGGCC
CCGGTCCGCCCGGAGGGGGGGGCGTAACTCGCGCCATCCGGTTTAAGACG
CCCCTGCATGTGAGGCGAATACCTCTGTAAAAACGCTTTGCGGGGAGGTA
GACGTTGCGTGCCTCGTGACCTTTTTTTGTTTGTTTTTGTCGTGTCTTTT
CCCCGCAAGGTCGGCCGACCCCATGTACGGTGTTCATCGATGACCCGAAA
CCATCCCCATCACCGCCCATTCTACGCACCCTTTTTTCTCTGTCGCTTGT
GTACAGTGCAGAGTGGCGTGCTTCTCTCCCGCTCCCTTTTGCTGAATCGC
TCGTACTACAGTAAACCGGACTATTGCCGCTTGGAGGTTGCATTTGCAAA
GGAGATGGGGTGGCCTTGATGGTCTTTGCCTGGTGCAGCAACAACAGCAG
CAGCAACGATCTCGCGCTGTCAAACCAAAATGTTGTCTTGCTCCTCTTTT
GTCCGAAACGTAGTTGTCCCGCCTTAGTTCCTTTGACGACAGCGATCACA
ACCCCCCACCTCCGGCCCCCCCGGTTTTCCAGATCACTTTCATGAGCAGC
CCGGGACACGTGCGCACGCTGAAGCGGCAGCGGTCTCGCTTTTTCGGGGG
CCAGGGCTGCATCGTCGAGACGCAAACCACGGTAGAGGACCGCATCCCGT
TAAGCGACAACTTCCACGTCGAAGACCGGTACGTGCGAAATGCCATCCTG
CATACAAATGCGCGAATAACGTGTTTATGGTTGGGTCTGCTGGCATCTAT
CTGATCGGGGGGAAAATGGGGCGTGCCTGTGTTTTTGTTGTTGCTGCTGT
TGTTTCGTTGTTCATGTCTTCACACTTACAGAATGGTGTGGTTTCGATTG
TGCACCTTCTTGGTTCGTTACTAGTCTTGAAGCGAAAGAACTGACGTTCC
ATCATGGCAAGGTGACCCATTATTCAAGTACCAATGGCAGACCACAATTG
AGTTGTATCATGTTGCCAAATTGTGTAATGTGTGTGTGTGTGTGTTTTTT
TTTTTCTTATTAGCATCGACCGCTTGATGTACTGGCCATTGAAAAGACGT
CAGTCTCAGTGCGGTGGAGAACACGAAATGCTTCTATGCACCATTATCTG
GGATCCTGTGACCAAGTGTCATGGGGGAGTCAACGCTACTCTCCGGATTC
AAGACAGATACATGCCGTACCAAAATGTGTATGTGTGTATGTGTATGTGT
ATGTGTTTGTGTGTTTTTTTTTCTTCCTTTCTACGGGGAAAAAGGTGGAT
CATTCGACCAGCGGCGGACGACGAAGGCAGCGGCAGCGGCGGCAAGCCGC
GCTGCACCGCGACGGTGACCTGGCGGTGCGTATGGCACAAGTTTACGGTA
ATCAAGGGGCTCATCGAGGGCAAGTGCCGCGCCGACGTGAAGTCGTTCAA
CATGGCATTCCTGCAGGTGAGGTGGCAAGATTGCTTTGAACCCTTGTGGA
CTGTGTGTGTGTCGTCGTCGCAGCAAGACGAAGATTACATGATTTTTTTT
TTTCCGTCATTTATTGTGTTTTATAGGACGAGCAAGTAAAAAATTACTGA
AGTCGTTCAACATCGCCTCCCTGGAGGTGCGGCTAGAGAATAAACAACAA
CGCAAAATGTAAAAAATCGAGCGCAAAAGTTAAAACAAAAGTGGTAACTT
ATTAAAAATCGGGAACAAAAGGGAGATGTTTAACATAAAGTACCATGGCT
TTTGCTTGATTTTTTTATTCCCCGAGCGGACCAAGGCTTGGCTACTGGTC
GGCCTCAGTCGTGTGTCTCAAGGTGTGGGGAAAAAAATGAAATGTAGAAA
GTATTCACCGAAATAAAACACGGAGAATTTACATGATTGTTGTGATTTTT
GAGAATATCCCACGAGATCGAGGCGTCGTTGGTTTGACCTAATGAAAGGA
ACTGGTGAGCACAGTTCGCACACGAAGGAGAGTAGAGTGTATGGACGTCA
TGATGCCCGCGATATTGCTATGGACAAGCCACCAAGAAGATGGGCGAAGA
AACGGCCTTCCAAACCGTAGTGGCGGAGGATGACGTTTGGCGCTCTCGAT
GAGGCACATAGTGATACAGCCAGCTCACCAGGCGTTCACCGTCCTTGACT
CGAGACGACGTGACAAGGGGAGGCTGGTACGGAGAGGAGCGGGGCGAGCG
ATGCGAAGGAGGAGGTGCCAGACGCTGAGCCCAACACGCAGGGACAGGGT
TTCGGAGCGGGCAAATCTCTCACACCCGACAAGGAGGCGGGGTTGACAGA
TGTGCACCGGGGGTTGGTGGTGGGAATGAAGGAACAACCGTCCGCTACGG
CTTTGTTTTCCGGACCGCCGGAGCAACCGACTCCAACTCCGCCTGCGACG
GCGAGGTTGGATTGGCAGCGAAAGAGTTGGACGGGATATTGGAGGGACAT
ACAACGGTTGCATGTCCTTCATTCCCACCACCAACCCCTGGTGCGCATCT
GTGAACTCAGCGTCCGGCATCTCCTCCGTCACGTCGATCGCCCCCCTCCT
CTCCGTACGAGCGTCATCCCCTTCGTCTCGTCGTCTCGAGTCACGGATGG
TGAACGCCCGGTGGCCATATCACTTTTGTACCGCCAAAGGTCTCCCCCAC
CACGATGTGGAAGACCGTCGTTTCCGCCATCGACTGAAACGTCGACGCCT
CGTCGTCATAGATGCGGTGTGCGCGTCGGCGGCGGAGTGGTACTCAGTCA
TCCTTGTCTTGCCGGAACAGGTTTTGTCCATCCTGGGGTGTGCCACACCC
TTGGCGAGGGGAGGACCGGGGGCGGCACAAGTTAAAAATTACGACAATCG
AGAACAACGATTGACACAACAATTAAGTACAATATCGGGGGAAAAGACAA
CATAAAGGGGAGAGATTTGACATGATTGATTGTCCATGTGGTCGAGTCCG
CCACGTCAGGGACTGTCCCTTAGGAGTAGAGCCCATTCGTCACAGTTTTT
TTTTTTTGTTGTTAACTCCCCTAGAGGACCAAGGCTTGACTGCTGGTTGG
CCTCGGTCGTGTTCCTCGAGGGGTGGAAAAGAGAACATAGCATATGTATC
GGGAAAAAAAACAGGGGAGAGAATTCACATGGTGGTCAGGGGAGAGAATT
CACATGGTGGTGGTGGTATGATTTTTGTGAAATTCCCAAGGGGACCGAGG
GTTAGCGCTAGTTAGTTGGGCCTACGTTGTTGCTTGATTGGGGTTCTTTA
CAACTGCTGAGCATAGTAGAGTAGGTGGACGTCATGATGCCCGCGATATG
GCTGTGGACAAGCCGCCAAGAAGCGGCGTCGGCGGTTCAACGACCTTCCA
AGTCGGGGTGAGGGGGAAGGGAAAGGGGGGGGCTGTTTGGCGCTCTCGAT
GAGGTAATCGTGATATCTCCCACCAGGCGTTCACCATCCGTGACTCGAGA
CGACGCTACGAAGGGGATGATGGTACGGAGGAGGGGGGCGATCGACGCGA
AGGAGGAGATGCCGGACGCTTGAGCTAAGCGCGCAGAGACAGGATTGGGA
TCTCTCACGCACGACAGGCAGGCGGGGTTCATGCGCACCGTCGGGGGTGG
TGGGAATGCAGGAACAACCGTCGACCACGGCATATTCTCCGATTCCAGGA
GTAGTAGACGGCAACGCTGTCTTCGACGGCGAGGTTGGATTAGCAGCGGA
AAATCTGGACGCGATTTCGGAGGGACATGCGACGGTTGTATGTCCCTCCA
ACACCGCCTCCGTTTCTTCCGCTGCTAATCCGACCTTGCTGTAGGAGACA
CAGTTGGTGTCCGTTGCTCATGACTCTGAGATAATGTCGTGACCAACCGC
TGTTCCCGCATTCCCACCACCCCCTGATGGTGCGCATCTTTCAACCCCGC
CTACTTGTCTTGCGTGAGAGCTTTCCGGCTCCCAATCCTGTGCCATGCGT
ATTGGGCTCAGCATCCGTCATGTCCTTGTTCGCATTGATCCCCCCCCTCC
TCTTCCGTACCAGCATCATTCCCTTCGTCTCGAGTCACGGATGGTGAACA
GCAGAGCAGCCGACCCAGGTCTTATGTCTTGGTCTTGGTTCGCACGCGCT
TATTCCCACCCTCTTGTGTCCTTCAACTCCCCCCCCAACAAAAAATAGAA
AAAACACGCGCGATACTGCTGCTGCCGTACACCCACCGCACCGAAAGGGA
ATTCGGGAGCATCGCTTTTTGTGATCCTCCCCTGTCTTTCACCGCCCCCT
TATATCAATCCCACAAGCGATACTACACCTGCCGTACAGCCACCACACCA
GAAAGGGAACACGGGAGCATCGCCAATTTCACCCCCCTGGGTCCTTTCAC
ACACACACACCCATCCCCGCACACGCAAACGCTCACGCTGCCGTACACCT
ACCACAACCGAAAAGGGAATGCGGGAGCACCTGGAATCCGAGGGGTCCCG
TGGAATCAAGCGTTGCCCCAGCTTACGGGATGCTCTCTTGTCGGTCGGGT
CCGGGAGGAGGATTTCGATAGACAGGTCCCTCTCCGGCCGAAGCCTGCTG
TCGCCGTTCGCGGATTCGGAGGATGGAGATGGCGGCGGGGGCGGAGGGGG
GACGGGGGACGCATTGTTGTCGTCGAACCGGAAGGTCGAGGTGAGTTTTG
CCCGAGCTGAGGTAGTGAAATTTGAAAAATGTTTTTGCGGCGCTTTGTTC
GGTCCCTTGTCGTCGATTGCTTGTTGTTGCTGCTTTTGATATCGTTGCCA
CTGAAAACGAGCAGGAGCGAGGGAGTGAGTTTGTCGTATTTTTTGCGGCG
CCGTGTTTCTTGGGTCCGTTGTGATTTGCTTCTTGTTGTTGGTGTTGTTG
TTGGCGTGATGGTTGTCGACGCCGCTGAAAACGGGCATCGGCGAGGGAGT
GAAATTGTCGTATTTTTTTGCGGCACCCGTGTTGTTTGTTCGGTCCCGTG
TGATTGCTTGTTTGGTGCTGTTGGTATCGTGCCGCTGAAAACGAGCCAGG
AGGAGGAAGCTCCCACGCACCTAGGCCAAGTTGTAGAGCCGCGCTTCCGA
TTTCTGGCTCACGCGATAGCCCACCCCACTCCCGCATTCTTCCCTTCCAC
GTTGTATCTAACGTTTCCAAGTCCCTCCCGCCCCGCCCCCCTCTCATTTT
ATTCGTCAACGGGGCCCCGCCGCGCAGTTCGGGTCCGCAAAAGCGGCGCG
ATCGTTCGAACCATACCTGCCGGCGATACGGGTGCTGTCAATCTTGTTCA
TCCTGTACATCTCGCTGTTCTGGGTGCGGTATCAGATGCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11086:50..5392+

>mRNA_Ecto-sp13_S_contig11086.948.1 ID=mRNA_Ecto-sp13_S_contig11086.948.1|Name=mRNA_Ecto-sp13_S_contig11086.948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11086:50..5392+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGACGCTAGTGAATGGCAGCAGACGACAAACGAAGGAGAAGGAGGGGG
AGGAGCCGCGGGTTCAACGAAAGGAGATGGAGGGGGCGGTCTGCGGGGCC
CCGGTCCGCCCGGAGGGGGGGGCGTAACTCGCGCCATCCGGTTTAAGACG
CCCCTGCATATCACTTTCATGAGCAGCCCGGGACACGTGCGCACGCTGAA
GCGGCAGCGGTCTCGCTTTTTCGGGGGCCAGGGCTGCATCGTCGAGACGC
AAACCACGGTAGAGGACCGCATCCCGTTAAGCGACAACTTCCACGTCGAA
GACCGGTGGATCATTCGACCAGCGGCGGACGACGAAGGCAGCGGCAGCGG
CGGCAAGCCGCGCTGCACCGCGACGGTGACCTGGCGGTGCGTATGGCACA
AGTTTACGGTAATCAAGGGGCTCATCGAGGGCAAGTGCCGCGCCGACGTG
AAGTCGTTCAACATGGCATTCCTGCAGGGAATGCGGGAGCACCTGGAATC
CGAGGGGTCCCGTGGAATCAAGCGTTGCCCCAGCTTACGGGATGCTCTCT
TGTCGGTCGGGTCCGGGAGGAGGATTTCGATAGACAGGTCCCTCTCCGGC
CGAAGCCTGCTGTCGCCGTTCGCGGATTCGGAGGATGGAGATGGCGGCGG
GGGCGGAGGGGGGACGGGGGACGCATTGTTGTCGTCGAACCGGAAGGTCG
AGTTCGGGTCCGCAAAAGCGGCGCGATCGTTCGAACCATACCTGCCGGCG
ATACGGGTGCTGTCAATCTTGTTCATCCTGTACATCTCGCTGTTCTGGGT
GCGGTATCAGATGCGG
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