prot_Ecto-sp13_S_contig11053.925.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11053.925.1
Unique Nameprot_Ecto-sp13_S_contig11053.925.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length95
Homology
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.300e-54
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0
Query:    5 CDEQGNGRPFERPRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR 95
            CDEQGN RPFERPRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR
Sbjct:  867 CDEQGNSRPFERPRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR 957          
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.170e-46
Identity = 84/100 (84.00%), Postives = 84/100 (84.00%), Query Frame = 0
Query:   12 RPFERP----------------RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR 95
            RPFERP                RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR
Sbjct:  948 RPFERPSPPFPESLPRLLLAETRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR 1047          
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.480e-18
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0
Query:   26 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSEL 85
            L   +AP+C  H +  +LL V+K+G N+GR+FYACS PRGE CDFFMW EDNP LV +EL
Sbjct:  696 LLKEVAPKCTHHLQTARLLRVKKSGANRGRRFYACSFPRGEECDFFMWVEDNPILVAAEL 755          
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A482SRV8_9ARCH (RecQ family ATP-dependent DNA helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRV8_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 3.250e-15
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0
Query:   26 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALV 81
            L  +LAP CP H    KLLTV+KTG NKGR+FYAC  P  + C+FF+WAEDNP L+
Sbjct:  125 LLEQLAPLCPGHSMPAKLLTVKKTGGNKGRRFYACCFPADQRCNFFLWAEDNPDLL 180          
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A7S4MYJ9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYJ9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.460e-12
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0
Query:   32 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETG 91
            PRC +H R  +LLTVRK T  N+GRKFYACSLPRGE CD F W ED        L    +G
Sbjct:  111 PRCARHGRPCRLLTVRKNTRGNRGRKFYACSLPRGEQCDHFQWEEDTGNAARRALLKSSSG 171          
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A448ZEN4_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEN4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.910e-12
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0
Query:   30 LAPRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAED 76
            +AP+C +HQR  KL+ VRK T  NKGR+FYACS+PRGE CD F WA+D
Sbjct:  610 VAPKCARHQRPCKLIKVRKNTSGNKGREFYACSMPRGEQCDHFQWADD 657          
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A7S4AC91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC91_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.250e-12
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:   28 LRLAPRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAED 76
            +  AP+C +HQR  KL+ V+KT   N+GR+FYACS+PRGE CD F WA+D
Sbjct:   63 IAAAPKCARHQRPCKLIKVKKTTSGNRGREFYACSMPRGEQCDHFQWADD 112          
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A7S2Q2M5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2M5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.470e-11
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0
Query:   32 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAED 76
            P C +HQR  KLLTV+K T  NKGRKFY CS+PRGE CDFF W ED
Sbjct:  630 PMCTRHQRPCKLLTVKKNTKGNKGRKFYVCSMPRGEQCDFFKWEED 675          
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: K0T7M4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T7M4_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 9.550e-11
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   32 PRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAED 76
            P C +HQR  KLLTV+K    NKGRKF+ CS+PRGE CDFF W ED
Sbjct:  551 PLCTRHQRPCKLLTVKKNNKGNKGRKFFVCSMPRGEQCDFFKWEED 596          
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A6S8XWW2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XWW2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.270e-10
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 0
Query:   32 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAED 76
            P CP+H R  KLL V+K T  NKGRKFYACS+P+GE CDFF W +D
Sbjct:  502 PVCPRHSRPCKLLIVKKNTTGNKGRKFYACSMPQGERCDFFQWEDD 547          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8A0_ECTSI1.300e-5498.90DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE2.170e-4684.00DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
W7TAC7_9STRA3.480e-1860.00DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A482SRV8_9ARCH3.250e-1560.71RecQ family ATP-dependent DNA helicase n=1 Tax=arc... [more]
A0A7S4MYJ9_9STRA6.460e-1255.74Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A448ZEN4_9STRA7.910e-1264.58DNA helicase n=1 Tax=Pseudo-nitzschia multistriata... [more]
A0A7S4AC91_9STRA8.250e-1258.00Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S2Q2M5_9STRA1.470e-1169.57Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0T7M4_THAOC9.550e-1165.22Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6S8XWW2_9STRA1.270e-1065.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010666Zinc finger, GRF-typePFAMPF06839zf-GRFcoord: 33..76
e-value: 3.9E-16
score: 58.8
NoneNo IPR availablePANTHERPTHR22993FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASEcoord: 30..77
NoneNo IPR availablePANTHERPTHR22993:SF10ENDONUCLEASE 8-LIKE 3coord: 30..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11053contigEcto-sp13_S_contig11053:4150..5367 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11053.925.1mRNA_Ecto-sp13_S_contig11053.925.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11053 4150..5368 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11053.925.1 ID=prot_Ecto-sp13_S_contig11053.925.1|Name=mRNA_Ecto-sp13_S_contig11053.925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
GGGGCDEQGNGRPFERPRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTG
LNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010666Znf_GRF