mRNA_Ecto-sp13_S_contig11053.925.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11053.925.1
Unique NamemRNA_Ecto-sp13_S_contig11053.925.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.300e-54
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:   13 CDEQGNGRPFERPRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR 285
            CDEQGN RPFERPRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR
Sbjct:  867 CDEQGNSRPFERPRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR 957
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.170e-46
Identity = 84/100 (84.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:   34 RPFERP----------------RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR 285
            RPFERP                RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR
Sbjct:  948 RPFERPSPPFPESLPRLLLAETRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR 1047
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.480e-18
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   76 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSEL 255
            L   +AP+C  H +  +LL V+K+G N+GR+FYACS PRGE CDFFMW EDNP LV +EL
Sbjct:  696 LLKEVAPKCTHHLQTARLLRVKKSGANRGRRFYACSFPRGEECDFFMWVEDNPILVAAEL 755
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A482SRV8_9ARCH (RecQ family ATP-dependent DNA helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRV8_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 3.250e-15
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   76 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALV 243
            L  +LAP CP H    KLLTV+KTG NKGR+FYAC  P  + C+FF+WAEDNP L+
Sbjct:  125 LLEQLAPLCPGHSMPAKLLTVKKTGGNKGRRFYACCFPADQRCNFFLWAEDNPDLL 180
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A7S4MYJ9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYJ9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.460e-12
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   94 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETG 273
            PRC +H R  +LLTVRK T  N+GRKFYACSLPRGE CD F W ED        L    +G
Sbjct:  111 PRCARHGRPCRLLTVRKNTRGNRGRKFYACSLPRGEQCDHFQWEEDTGNAARRALLKSSSG 171
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A448ZEN4_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEN4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.910e-12
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   88 LAPRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAED 228
            +AP+C +HQR  KL+ VRK T  NKGR+FYACS+PRGE CD F WA+D
Sbjct:  610 VAPKCARHQRPCKLIKVRKNTSGNKGREFYACSMPRGEQCDHFQWADD 657
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A7S4AC91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC91_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.250e-12
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   82 LRLAPRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAED 228
            +  AP+C +HQR  KL+ V+KT   N+GR+FYACS+PRGE CD F WA+D
Sbjct:   63 IAAAPKCARHQRPCKLIKVKKTTSGNRGREFYACSMPRGEQCDHFQWADD 112
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A7S2Q2M5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2M5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.470e-11
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   94 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAED 228
            P C +HQR  KLLTV+K T  NKGRKFY CS+PRGE CDFF W ED
Sbjct:  630 PMCTRHQRPCKLLTVKKNTKGNKGRKFYVCSMPRGEQCDFFKWEED 675
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: K0T7M4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T7M4_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 9.550e-11
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   94 PRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAED 228
            P C +HQR  KLLTV+K    NKGRKF+ CS+PRGE CDFF W ED
Sbjct:  551 PLCTRHQRPCKLLTVKKNNKGNKGRKFFVCSMPRGEQCDFFKWEED 596
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BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Match: A0A6S8XWW2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XWW2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.270e-10
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   94 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAED 228
            P CP+H R  KLL V+K T  NKGRKFYACS+P+GE CDFF W +D
Sbjct:  502 PVCPRHSRPCKLLIVKKNTTGNKGRKFYACSMPQGERCDFFQWEDD 547
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11053.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8A0_ECTSI1.300e-5498.90DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE2.170e-4684.00DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
W7TAC7_9STRA3.480e-1860.00DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A482SRV8_9ARCH3.250e-1560.71RecQ family ATP-dependent DNA helicase n=1 Tax=arc... [more]
A0A7S4MYJ9_9STRA6.460e-1255.74Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A448ZEN4_9STRA7.910e-1264.58DNA helicase n=1 Tax=Pseudo-nitzschia multistriata... [more]
A0A7S4AC91_9STRA8.250e-1258.00Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S2Q2M5_9STRA1.470e-1169.57Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0T7M4_THAOC9.550e-1165.22Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A6S8XWW2_9STRA1.270e-1065.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11053contigEcto-sp13_S_contig11053:4150..5368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score193.4
Seed ortholog evalue5e-47
Seed eggNOG ortholog2880.D7G8A0
Model size288
KEGG koko:K10730,ko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
Cds size285
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462573.322921-CDS-Ecto-sp13_S_contig11053:4149..42021681462573.322921-CDS-Ecto-sp13_S_contig11053:4149..4202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11053 4150..4202 +
1681462573.345404-CDS-Ecto-sp13_S_contig11053:4615..47551681462573.345404-CDS-Ecto-sp13_S_contig11053:4615..4755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11053 4616..4755 +
1681462573.3546615-CDS-Ecto-sp13_S_contig11053:5275..53671681462573.3546615-CDS-Ecto-sp13_S_contig11053:5275..5367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11053 5276..5367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11053.925.1prot_Ecto-sp13_S_contig11053.925.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11053 4150..5367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11053.925.1

>prot_Ecto-sp13_S_contig11053.925.1 ID=prot_Ecto-sp13_S_contig11053.925.1|Name=mRNA_Ecto-sp13_S_contig11053.925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
GGGGCDEQGNGRPFERPRNAREEEELFLRLAPRCPQHQRAGKLLTVRKTG
LNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWR
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mRNA from alignment at Ecto-sp13_S_contig11053:4150..5368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11053.925.1 ID=mRNA_Ecto-sp13_S_contig11053.925.1|Name=mRNA_Ecto-sp13_S_contig11053.925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11053:4150..5368+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGGGCGGCTGCGACGAGCAGGGAAACGGCCGGCCCTTCGAGCGTCC
TAGGTCAGTGCGTATGGACGTCATCTGTGTTTGGCGTTGGCACGATTGGT
CAGGAGCAAGAGGGATTGTGAGGAGGATTCTGCTCGACATGCACGTTTGC
AGCGTATGGCGAAAAAAAGCTCCGGTTCTTCTCCGCGTCTTGCCGCGACG
TGTCAAGGTTTGTGCGGCGGTTTGTCAATGTCCACCTCTAGAGCAGACCT
GTTTATCTCGGCCTCTCTGTCTGTCCATCTATCTTCCTGTTTTCTGTTTT
ATTTCGTGCACACGCTCTTCTTGTTTGTCTCTGTTTCGCAAACAAAATCG
TTAATTCCTTTTCGTTCTTTACCTTTTTTTCATCCTTTTTGTGAAATAAC
ATTCGTGACCTATTTTAGTCCCCGGTTCCCTAAGTCTCTCCCGCGCCTGC
TGCTCGCCGAGACCAGAAACGCGAGGGAAGAAGAGGAGCTCTTCCTTCGG
CTGGCGCCGAGGTGTCCACAACACCAGCGTGCGGGGAAACTCTTGACGGT
TCGAAAGACCGGCCTCAACAAAGGGAGGAAGTTCTACGCCTGCAGCCTTC
CCCGAGGTGGGAATGTATAGGAGTCGTCCTGGTACGGCTTCAGGAGGTAG
ACAACCTCTCGTAAAAATGCTTTGTACCAGAAAAAAGGAACGGGATCTCG
AAACCATAAAGCGAGTAACTCCAAGGGATTTTTCGTGGACAACTTATTTC
GCGCGACTCCATCACACCCTGCTGCATGACAGCACATACGGTATCAAGAT
GCCGTCGTTCAACATGGCTGGCAGGTTGGGCCTGGTGTTTGTTTTTGGGG
TTGGCGTGTTTTTGCGTCGTCGGAACGTGTCCTGGAACGAATCTCAATAC
TGCAACAAAGAAGACAACGTGTTGCCCCCCCAGCTCGCTGCCTTTGTCGC
CGTTTTAAGCCTTTTCCGTGACTGTTGCCAAGACGAAAAGAACGCTTGCC
CCTGCAACGATCCCTCCACTCCCATCCTTGAATTCAGCGTTGAGTTTGGT
AGCACGCCGTTGTTGTGTCTTTTGCTCACCGCCGATCTTTGCTCTTTGAC
TTGACCGCCAACACTCGAAAAAACAGGGGAAGGTTGCGACTTTTTCATGT
GGGCCGAGGACAACCCGGCCCTGGTGCTGTCGGAGCTCACGCTTCAAGAG
ACCGGGGAGGAGTGGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11053:4150..5368+

>mRNA_Ecto-sp13_S_contig11053.925.1 ID=mRNA_Ecto-sp13_S_contig11053.925.1|Name=mRNA_Ecto-sp13_S_contig11053.925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11053:4150..5368+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGGGCGGCTGCGACGAGCAGGGAAACGGCCGGCCCTTCGAGCGTCC
TAGAAACGCGAGGGAAGAAGAGGAGCTCTTCCTTCGGCTGGCGCCGAGGT
GTCCACAACACCAGCGTGCGGGGAAACTCTTGACGGTTCGAAAGACCGGC
CTCAACAAAGGGAGGAAGTTCTACGCCTGCAGCCTTCCCCGAGGGGAAGG
TTGCGACTTTTTCATGTGGGCCGAGGACAACCCGGCCCTGGTGCTGTCGG
AGCTCACGCTTCAAGAGACCGGGGAGGAGTGGAGG
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