prot_Ecto-sp13_S_contig11050.923.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11050.923.1
Unique Nameprot_Ecto-sp13_S_contig11050.923.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length224
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11050.923.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 1.230e-127
Identity = 206/223 (92.38%), Postives = 212/223 (95.07%), Query Frame = 0 
Query:    2 SARFLLSVVAIVRSGLHIATDAFTLSSGARHPPRSGSASERLLLLEVEAETAAPARNPQSRPTSDAWCVRSVAGDALRGACPGHDRQPGGRRHRGCSSRLGAVGTAPSEVVVGVGGAARPAMLGASARVRKASKQEVRAMTRGLNSITSFAAYGSRETPGRMTIAEEILLVEEVKLLARYLKTREQLEEELGGREPTREEWAASLNISTEELAHQMMSSARAQ 224
            SARFLLSV AIVRSGLHIATDAFTL SGA  PPR+GSASERL LLEVEAETA PARNPQSRPTSDAWC RSVAG+ALR ACPGHDRQPGGRRHRG SSRLGAVGTAPSEVVVG+GGAARPA+LGASAR RKASKQEVRAMTRGLNSITSFAAYGSRETPGRMT+AEEILLVEEVKLLARYLKTREQLE ELGGREPTREEWAASLNISTEELAHQMM+SARAQ
Sbjct:   18 SARFLLSVAAIVRSGLHIATDAFTLPSGAGRPPRNGSASERL-LLEVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGFSSRLGAVGTAPSEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYGSRETPGRMTMAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMMASARAQ 239
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11050.923.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 7.200e-125
Identity = 204/224 (91.07%), Postives = 211/224 (94.20%), Query Frame = 0 
Query:    2 SARFLLSVVAIVRSGLHIATDAFTLSSGARHPPRSGSASERLLLLEVEAETAAPARNPQSRPTSDAWCVRSVAGDALRGACPGHDRQPGGRRHRGCSSRLGAVGTA-PSEVVVGVGGAARPAMLGASARVRKASKQEVRAMTRGLNSITSFAAYGSRETPGRMTIAEEILLVEEVKLLARYLKTREQLEEELGGREPTREEWAASLNISTEELAHQMMSSARAQ 224
            SARFLLSV AIVRSGLHIATDAFTL SGA HPPRS SASERLLLLEVEAETA PARNPQSRPTSDAWC RSVAG+ALRGACPGHDR P GRRHRGCSSRLGAVGTA PSEVVVGVGGAA PA+LGASARVRKAS QEVRA+TRGLNSITSFAAYGSR+T GRMTIAEEILLVEEVK+LARYLKTREQLE ELGGREPTREEWAASLNISTEELAHQM++SARAQ
Sbjct:   18 SARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAPSEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYGSRDTAGRMTIAEEILLVEEVKILARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQ 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11050.923.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNQ9_9PHAE1.230e-12792.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLA7_ECTSI7.200e-12591.07RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..191
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 172..219
e-value: 1.0E-6
score: 30.7
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 175..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11050contigEcto-sp13_S_contig11050:591..2816 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11050.923.1mRNA_Ecto-sp13_S_contig11050.923.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11050 590..2816 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11050.923.1 ID=prot_Ecto-sp13_S_contig11050.923.1|Name=mRNA_Ecto-sp13_S_contig11050.923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
DSARFLLSVVAIVRSGLHIATDAFTLSSGARHPPRSGSASERLLLLEVEA
ETAAPARNPQSRPTSDAWCVRSVAGDALRGACPGHDRQPGGRRHRGCSSR
LGAVGTAPSEVVVGVGGAARPAMLGASARVRKASKQEVRAMTRGLNSITS
FAAYGSRETPGRMTIAEEILLVEEVKLLARYLKTREQLEEELGGREPTRE
EWAASLNISTEELAHQMMSSARAQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR013324RNA_pol_sigma_r3/r4-like