mRNA_Ecto-sp13_S_contig11050.923.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11050.923.1
Unique NamemRNA_Ecto-sp13_S_contig11050.923.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11050.923.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 1.230e-127
Identity = 206/223 (92.38%), Postives = 212/223 (95.07%), Query Frame = 1 
Query:    4 SARFLLSVVAIVRSGLHIATDAFTLSSGARHPPRSGSASERLLLLEVEAETAAPARNPQSRPTSDAWCVRSVAGDALRGACPGHDRQPGGRRHRGCSSRLGAVGTAPSEVVVGVGGAARPAMLGASARVRKASKQEVRAMTRGLNSITSFAAYGSRETPGRMTIAEEILLVEEVKLLARYLKTREQLEEELGGREPTREEWAASLNISTEELAHQMMSSARAQ 672
            SARFLLSV AIVRSGLHIATDAFTL SGA  PPR+GSASERL LLEVEAETA PARNPQSRPTSDAWC RSVAG+ALR ACPGHDRQPGGRRHRG SSRLGAVGTAPSEVVVG+GGAARPA+LGASAR RKASKQEVRAMTRGLNSITSFAAYGSRETPGRMT+AEEILLVEEVKLLARYLKTREQLE ELGGREPTREEWAASLNISTEELAHQMM+SARAQ
Sbjct:   18 SARFLLSVAAIVRSGLHIATDAFTLPSGAGRPPRNGSASERL-LLEVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGFSSRLGAVGTAPSEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYGSRETPGRMTMAEEILLVEEVKLLARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMMASARAQ 239
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11050.923.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 7.200e-125
Identity = 204/224 (91.07%), Postives = 211/224 (94.20%), Query Frame = 1 
Query:    4 SARFLLSVVAIVRSGLHIATDAFTLSSGARHPPRSGSASERLLLLEVEAETAAPARNPQSRPTSDAWCVRSVAGDALRGACPGHDRQPGGRRHRGCSSRLGAVGTA-PSEVVVGVGGAARPAMLGASARVRKASKQEVRAMTRGLNSITSFAAYGSRETPGRMTIAEEILLVEEVKLLARYLKTREQLEEELGGREPTREEWAASLNISTEELAHQMMSSARAQ 672
            SARFLLSV AIVRSGLHIATDAFTL SGA HPPRS SASERLLLLEVEAETA PARNPQSRPTSDAWC RSVAG+ALRGACPGHDR P GRRHRGCSSRLGAVGTA PSEVVVGVGGAA PA+LGASARVRKAS QEVRA+TRGLNSITSFAAYGSR+T GRMTIAEEILLVEEVK+LARYLKTREQLE ELGGREPTREEWAASLNISTEELAHQM++SARAQ
Sbjct:   18 SARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAPSEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYGSRDTAGRMTIAEEILLVEEVKILARYLKTREQLEAELGGREPTREEWAASLNISTEELAHQMVASARAQ 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11050.923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNQ9_9PHAE1.230e-12792.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLA7_ECTSI7.200e-12591.07RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11050contigEcto-sp13_S_contig11050:590..2816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score377.9
Seed ortholog evalue3.4e-102
Seed eggNOG ortholog2880.D8LLA7
Model size673
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
Ec32 ortholog descriptionRNA polymerase sigma-70 region 2
Ec32 orthologEc-27_001910.1
Cds size672
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462573.2212708-CDS-Ecto-sp13_S_contig11050:590..7981681462573.2212708-CDS-Ecto-sp13_S_contig11050:590..798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11050 591..798 -
1681462573.2336378-CDS-Ecto-sp13_S_contig11050:1927..23661681462573.2336378-CDS-Ecto-sp13_S_contig11050:1927..2366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11050 1928..2366 -
1681462573.2437649-CDS-Ecto-sp13_S_contig11050:2791..28161681462573.2437649-CDS-Ecto-sp13_S_contig11050:2791..2816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11050 2792..2816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11050.923.1prot_Ecto-sp13_S_contig11050.923.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11050 591..2816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11050.923.1

>prot_Ecto-sp13_S_contig11050.923.1 ID=prot_Ecto-sp13_S_contig11050.923.1|Name=mRNA_Ecto-sp13_S_contig11050.923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
DSARFLLSVVAIVRSGLHIATDAFTLSSGARHPPRSGSASERLLLLEVEA
ETAAPARNPQSRPTSDAWCVRSVAGDALRGACPGHDRQPGGRRHRGCSSR
LGAVGTAPSEVVVGVGGAARPAMLGASARVRKASKQEVRAMTRGLNSITS
FAAYGSRETPGRMTIAEEILLVEEVKLLARYLKTREQLEEELGGREPTRE
EWAASLNISTEELAHQMMSSARAQ
back to top

mRNA from alignment at Ecto-sp13_S_contig11050:590..2816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11050.923.1 ID=mRNA_Ecto-sp13_S_contig11050.923.1|Name=mRNA_Ecto-sp13_S_contig11050.923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2227bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11050:590..2816- (Ectocarpus species13 EcNAP12_S_4_19m)
GATAGCGCCCGGTTTCTACTGTCAGGTGCGCGCTTGATGAGGCACTCATT
GCGGGGCGAAATGATGATGTGCTGTGTCTGTCTTCTGCCTCAAGCTTTTT
GCGAGGAAAGGTCGGGTGATGTGTGTGTTCATGCCGGAAAGCGGTGGGTT
CGGGCCGGGGAATTCGACATTGCTTTTCTCAAAACGCTGCCTTTACTCCC
TGGTTTAGGGCGGGTGGACCGACAGTTGTGCCCGAGGTCCGAGACAGCGA
TGGTGCGGTGCCAAACAAAACCAAAACATCACGCACCGCGCCTTCTGACA
TCTTTTAAGCCAATCTTAGTTCCTGTCTCAAAACAAGTAAACCGTGTTTT
TGAACACAATCTCATCAACCAGACCAGAGTGGTTGAGCATGCTTATCAGT
TTCGCCGCCTATCATGCGTTTCTGCGGCAAACGCTCCCACTCAAACGCAG
TGGTGGCGATCGTCCGGAGCGGGCTGCACATCGCCACGGATGCCTTCACC
CTGTCCTCCGGGGCCAGACACCCGCCTCGCAGCGGCAGCGCGTCGGAGCG
TCTCCTTCTTCTTGAAGTAGAAGCCGAGACCGCTGCTCCGGCCCGCAACC
CTCAGTCTCGACCAACGAGCGACGCTTGGTGCGTTCGTTCTGTTGCGGGA
GACGCGTTACGCGGCGCTTGTCCTGGGCATGATCGGCAACCTGGTGGCAG
GCGGCATAGGGGTTGCTCTTCTCGGCTTGGTGCCGTAGGAACTGCGCCTA
GCGAGGTGGTTGTTGGGGTTGGCGGGGCCGCGAGGCCGGCTATGTTGGGG
GCATCGGCCAGGGTCAGGAAGGCGAGCAAGCAGGAGGTGCGAGCCATGAC
GAGGGGGCTCAACAGCATCACGTCGTTCGCCGCGTACGGGTGAGATATGA
CAAAGAGCCATGATGTCGTGATTATGGTCGAGCCCCCTGCAGCGATGGAG
ACGGCGGTGTGGAGGATTTTTTTGTCCCGACACCAAAAAATTATACTCGT
TGAGAGGGTGTAAGAGAGAGCGGTAGACGGCGGGTACAATTTTTTACACC
ACCAAGCGCAGCCCTTCGTGCGGATGTCAGCAGTTGGTGCTCTAAGCGCC
CACGCCGGTTGGTTGGTGTCTGCTACCTTGTCGACGCTCGCATTGGACTT
TTCTTCATGCACGTTTTGCTGCTTGCATTTTGGACTTGCTAGACTGCTGT
AGTCTCCGGAAGGGGGTAAACTAGATACAACGCCAGTATATTTCGTAGCC
CTTGTGATGCGTTTTAGTGCCGCCGGAACGCCGCAACTATTTTTCATGAT
ACAAGGTTCAAGGTCCCGCCGCTAGCACACGCGTTTTACATAGCGCGTAG
CCAGTGTCGTCGCAGGCCATGCGGCGGTCGTCGTCTCCCACCAATCAACA
AGCCTTGGTCACAGGAGAAGACCGGTCTCCCTGGCTGTGTTGAAATCCTC
CCACTGCCTGTTTTTCTTGTTCTTCACTGTGATAGCCGTGTACTTGCTCC
GTTGTGTGTCCTACAGCAGTAAGTAAAACTCCAAGAACAGCACTCGTAGA
TTGTACCGAGATACACCGCTGTTTACATTACCAGGTAGAACATAGCGCGT
ATTGCCCCGCCCTACGAAGCGCCGTTCACGTAGTTAGTTTATTGTTTTCG
ATCAGATTGCTCACGGCCTTCTCCTTGTGTGTTCCGGCGCCTGCCCAAAA
ATCTACGATAGATTGTATCCGGATACACGCTGCTACACAGTAGTGCACTA
TTTCCCCGCCCTTCAAAGCGCCGAAATACTGCTGAAGTATCTAAATTGGT
TGCTTTCGATCAGTTGCTCACGGCCGTCCTCCATGAGTGACGCCGCGGTT
GTTGCCAGATTGCCTGAACGTGCCATCGTGACACCCAAGCGCATGTTTGT
TGTTTTCGAAGAGCAGTAGCAGTAGCTCACGGCCGTCCTCGTGTGTGTTG
CCGCGGTTCGCCTGAACGTGTTCGTGCCATCATCTTTAATAAAACTCCGT
ATCATCTTGATGTTACAGGTCGCGGGAGACGCCGGGTCGGATGACGATCG
CGGAAGAGATCCTGCTCGTGGAAGAGGTTAAGCTCCTCGCCCGGTACCTC
AAGACCCGCGAGCAGCTGGAGGAGGAGCTGGGAGGGCGGGAGCCCACCCG
CGAGGAGTGGGCGGCGAGCCTTAACATCTCCACGGAGGAGCTTGCCCACC
AGATGATGTCTTCGGCACGAGCACAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11050:590..2816-

>mRNA_Ecto-sp13_S_contig11050.923.1 ID=mRNA_Ecto-sp13_S_contig11050.923.1|Name=mRNA_Ecto-sp13_S_contig11050.923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11050:590..2816- (Ectocarpus species13 EcNAP12_S_4_19m)
GATAGCGCCCGGTTTCTACTGTCAGTGGTGGCGATCGTCCGGAGCGGGCT
GCACATCGCCACGGATGCCTTCACCCTGTCCTCCGGGGCCAGACACCCGC
CTCGCAGCGGCAGCGCGTCGGAGCGTCTCCTTCTTCTTGAAGTAGAAGCC
GAGACCGCTGCTCCGGCCCGCAACCCTCAGTCTCGACCAACGAGCGACGC
TTGGTGCGTTCGTTCTGTTGCGGGAGACGCGTTACGCGGCGCTTGTCCTG
GGCATGATCGGCAACCTGGTGGCAGGCGGCATAGGGGTTGCTCTTCTCGG
CTTGGTGCCGTAGGAACTGCGCCTAGCGAGGTGGTTGTTGGGGTTGGCGG
GGCCGCGAGGCCGGCTATGTTGGGGGCATCGGCCAGGGTCAGGAAGGCGA
GCAAGCAGGAGGTGCGAGCCATGACGAGGGGGCTCAACAGCATCACGTCG
TTCGCCGCGTACGGGTCGCGGGAGACGCCGGGTCGGATGACGATCGCGGA
AGAGATCCTGCTCGTGGAAGAGGTTAAGCTCCTCGCCCGGTACCTCAAGA
CCCGCGAGCAGCTGGAGGAGGAGCTGGGAGGGCGGGAGCCCACCCGCGAG
GAGTGGGCGGCGAGCCTTAACATCTCCACGGAGGAGCTTGCCCACCAGAT
GATGTCTTCGGCACGAGCACAG
back to top