prot_Ecto-sp13_S_contig11.875.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11.875.1
Unique Nameprot_Ecto-sp13_S_contig11.875.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length322
Homology
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: D7G4R0_ECTSI (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R0_ECTSI)

HSP 1 Score: 603 bits (1554), Expect = 4.900e-217
Identity = 299/317 (94.32%), Postives = 305/317 (96.21%), Query Frame = 0
Query:    1 MSQKKCSKEEDSCNQHSNSD-SGVDVIFSDTDMVVLNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWTNVVHTACDSLLNDEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDMVSARLWDTVDGHLKKVVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH 316
            MS  K +K EDS NQHS+SD S VDVIFSD D+VVLNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWT+VVHTAC+SLLNDEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGD VSARLWDTVDGHLKK VGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIK KEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEG AKS+RLLLHARRISFPH
Sbjct:    1 MSHDKSTKGEDSRNQHSSSDCSDVDVIFSDPDIVVLNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWTDVVHTACESLLNDEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGTAKSERLLLHARRISFPH 317          
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: UPI001C07D4FB (RluA family pseudouridine synthase n=1 Tax=Amphritea atlantica TaxID=355243 RepID=UPI001C07D4FB)

HSP 1 Score: 159 bits (401), Expect = 6.210e-44
Identity = 80/177 (45.20%), Postives = 115/177 (64.97%), Query Frame = 0
Query:  143 DGHLKKVVGPGVD---CLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH 316
            D  L  V G G D   CL  RVQ R+P A  VHRLD  TSG++V+ L+ E+ R +  QF+ER+  K Y A+++GR+ +   SG V   LR D DNRP Q+   E+G  A T+W+ +++  + T V+ TP+TGR+HQ+R+H  +LGHP++GD  Y  P+ + +S+RLLLHA  +SF H
Sbjct:   23 DPDLLSVPGRGEDKQDCLWRRVQQRFPTALIVHRLDYPTSGIMVLGLSRESHRHLSIQFQERLTEKRYQAIVDGRLPRA--SGTVDQPLRCDWDNRPLQIIDHEQGKPAQTHWQVLEYLTNATRVELTPITGRSHQLRVHMQYLGHPILGDRFYANPDQRTRSERLLLHAESLSFNH 197          
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: UPI0019D3727C (pseudouridine synthase n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3727C)

HSP 1 Score: 159 bits (401), Expect = 8.080e-44
Identity = 76/162 (46.91%), Postives = 111/162 (68.52%), Query Frame = 0
Query:  155 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH 316
            DCL+TR+Q  +P A  VHRLD DTSG++++ LT E    + RQF++R   KTYTAV+ G  A+   SGE+   +  D DNRP+Q+ C E+G +A T ++ ++ + DR+ ++ +PVTGR+HQ+R+H   LGHP++G  +Y  PE  A +DRL+LHA RI F H
Sbjct:   47 DCLITRLQRDYPSASIVHRLDLDTSGIMIIPLTRECHAHISRQFQQRRVEKTYTAVVWGEPARD--SGEIDLPIACDWDNRPRQLICHERGKQALTRYQVLERRGDRSRLELSPVTGRSHQLRIHMRELGHPILGCDMYAHPEALAMADRLMLHATRIGFEH 206          
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: A0A1Q8FZ42_9PROT (Pseudouridine synthase n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FZ42_9PROT)

HSP 1 Score: 158 bits (400), Expect = 1.210e-43
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 0
Query:  155 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH 316
            DCL  R ++ +P AR +HRLD DTSG++V+ALT  A   + +QF +R  SK+Y A ++G M  T  SG V   L  D  NRP+QM C E+G  A T+WE +   +  + V   P+TGR+HQ+R+H +HLGHP++GD+LY  P+  A SDRL LHAR + F H
Sbjct:   49 DCLEARARADFPTARIIHRLDMDTSGVIVLALTAHAQAHIGKQFEKRQTSKSYIARVQGEM--TQSSGRVDQPLITDWPNRPRQMICHERGRRAVTDWEVLDIADGVSRVRLAPLTGRSHQLRVHMLHLGHPILGDNLYAPPDALAASDRLCLHARELGFRH 208          
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: A0A1H9I0B1_9GAMM (Pseudouridine synthase n=1 Tax=Amphritea atlantica TaxID=355243 RepID=A0A1H9I0B1_9GAMM)

HSP 1 Score: 157 bits (398), Expect = 1.740e-43
Identity = 84/180 (46.67%), Postives = 114/180 (63.33%), Query Frame = 0
Query:  146 LKKVVGPGVD---CLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH-VSEHP 321
            L  V G G D   CL  RVQ  +P AR VHRLD  TSG++V+AL+  + R +  QF+ER   K+Y A++ GR+AK   SG V   LR D +NRP Q+   ++G  A T+W  I+  +D + V+ TP+TGR+HQ+R+H   LGHP++GD  Y TP    +S+RLLLHA  +SF H VS  P
Sbjct:   26 LLSVPGRGADKQDCLWRRVQQHYPTARIVHRLDYATSGVMVLALSATSHRHLSIQFQERKTDKSYQAIVAGRLAKN--SGTVNQPLRCDWENRPLQIIDHQQGKSAQTHWRLIEQLDDASRVELTPITGRSHQLRVHMQFLGHPILGDRFYATPRQIERSERLLLHAHSLSFSHPVSGEP 203          
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: A0A136HHU2_9GAMM (RNA pseudouridine synthase n=2 Tax=Neptuniibacter TaxID=459520 RepID=A0A136HHU2_9GAMM)

HSP 1 Score: 157 bits (396), Expect = 3.350e-43
Identity = 81/167 (48.50%), Postives = 110/167 (65.87%), Query Frame = 0
Query:  155 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNW-----ERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH 316
            DCL  RVQ+++P AR VHRLD  TSG++V+ALT++A R + R F+ER   K Y A++ G    T   G V   LR D +NRP Q+   E+G  A T+W     ER     + T V+ TP+TGR+HQ+R+H   +GHP++GD  Y TPEG A+SDRLLLHA +++FPH
Sbjct:   32 DCLWRRVQTQFPTARVVHRLDYATSGVMVLALTLDAQRALNRSFQERKTHKRYQAIIAG--TPTESDGSVELPLRCDWENRPLQIVDFEQGKSALTHWKVLATERAAQGIENTRVELTPITGRSHQLRVHMQAMGHPILGDRFYATPEGVAQSDRLLLHAEQLAFPH 196          
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: A0A6P2AHX5_9BACT (RluA family pseudouridine synthase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6P2AHX5_9BACT)

HSP 1 Score: 156 bits (394), Expect = 6.470e-43
Identity = 80/167 (47.90%), Postives = 111/167 (66.47%), Query Frame = 0
Query:  154 VDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTD--NRPKQMFCEEKGNEAHTNWERIKWKED--RTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH 316
            +DCL TRVQ ++PEAR VHRLD+DTSG++VMA   EA RE+ RQF +R   K YTA++ G +     +G +   +R D D  N+P+Q+   E G  + T++  I+  +D  RT +D  P+TGR+HQ+R+H   +GHP++GD LY  PE  A SDRLLLHAR + F H
Sbjct:   31 LDCLATRVQRQYPEARIVHRLDRDTSGVIVMAFDAEAHRELSRQFHDREVEKRYTAIVAGHVQSD--TGRIDLPIRKDMDPANKPRQLIDHEHGRPSITDYTVIERLDDPQRTRLDLKPITGRSHQLRLHLKEIGHPILGDDLYAPPEVLALSDRLLLHARELWFVH 195          
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: A0A2E2KKK0_9GAMM (RNA pseudouridine synthase n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2E2KKK0_9GAMM)

HSP 1 Score: 155 bits (393), Expect = 8.110e-43
Identity = 79/162 (48.77%), Postives = 106/162 (65.43%), Query Frame = 0
Query:  155 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH 316
            DCL  RVQ+ +P AR VHRLD  TSGL+V+ALT+EA R++ R F+ER   K Y A++ G+ ++  K G V   L  D +NRP Q+   E G  A T+W+        T V+ TP+TGR+HQ+R+H   +GHP++GD  Y   + KA SDRLLLHA R+SFPH
Sbjct:   32 DCLWRRVQAEFPTARVVHRLDYATSGLMVLALTLEAQRDISRSFQERKTGKLYQAIISGKPSE--KQGSVDLPLICDWENRPLQIVDHEHGKNALTHWKATGEDSRGTRVELTPITGRSHQLRVHMQAMGHPIIGDRFYADEDSKALSDRLLLHAERLSFPH 191          
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: A0A8A4TYK2_9BACT (Pseudouridine synthase n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TYK2_9BACT)

HSP 1 Score: 156 bits (394), Expect = 8.410e-43
Identity = 80/162 (49.38%), Postives = 101/162 (62.35%), Query Frame = 0
Query:  155 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH 316
            D L +R Q   PEAR VHRLD +TSG+ VMAL  ++ RE+ RQF +R   KTY A+  G M    + GEV   L  D  NRP+QM   E G +A T W  I  + DRTWV  TP+TGR+HQ+R+H   +GHP++GD LY  PE    + RLLLHA  +SF H
Sbjct:   45 DSLASRAQQLEPEARTVHRLDCETSGVTVMALDADSHRELSRQFHDREVLKTYVAICAGMMET--EQGEVNLPLVCDWPNRPRQMVDHENGKQAQTFWRVIHREPDRTWVQLTPITGRSHQLRVHLREIGHPILGDRLYAPPEVMRMAPRLLLHAEMLSFSH 204          
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Match: UPI001E4AF6DC (RluA family pseudouridine synthase n=1 Tax=Amphritea pacifica TaxID=2811233 RepID=UPI001E4AF6DC)

HSP 1 Score: 155 bits (393), Expect = 9.670e-43
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 0
Query:  155 DCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKAKSDRLLLHARRISFPH 316
            DCL  RVQ  +P AR VHRLD  TSG++V+AL   + R +  QF+ER   K+Y AV+ G++AK   SG +   LR D DNRP Q+   ++G  A T+W  I+  +D   V+ TP+TGR+HQ+R+H   LGHP++GD  Y TP    +S+RLLLHAR ++F H
Sbjct:   38 DCLWRRVQQHYPTARIVHRLDYATSGVMVLALNAASHRHLSIQFQERKTGKSYQAVVAGQLAKN--SGTINQPLRCDWDNRPLQIIDHQQGKSAQTHWRLIEPLDDACRVELTPITGRSHQLRVHMQFLGHPILGDRFYATPSQIERSERLLLHARSLTFSH 197          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11.875.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R0_ECTSI4.900e-21794.32Ribosomal large subunit pseudouridine synthase A n... [more]
UPI001C07D4FB6.210e-4445.20RluA family pseudouridine synthase n=1 Tax=Amphrit... [more]
UPI0019D3727C8.080e-4446.91pseudouridine synthase n=1 Tax=Parahaliea mediterr... [more]
A0A1Q8FZ42_9PROT1.210e-4347.53Pseudouridine synthase n=2 Tax=Maricaulis TaxID=74... [more]
A0A1H9I0B1_9GAMM1.740e-4346.67Pseudouridine synthase n=1 Tax=Amphritea atlantica... [more]
A0A136HHU2_9GAMM3.350e-4348.50RNA pseudouridine synthase n=2 Tax=Neptuniibacter ... [more]
A0A6P2AHX5_9BACT6.470e-4347.90RluA family pseudouridine synthase n=1 Tax=Phycisp... [more]
A0A2E2KKK0_9GAMM8.110e-4348.77RNA pseudouridine synthase n=1 Tax=Oceanospirillac... [more]
A0A8A4TYK2_9BACT8.410e-4349.38Pseudouridine synthase n=1 Tax=Sulfidibacter coral... [more]
UPI001E4AF6DC9.670e-4347.53RluA family pseudouridine synthase n=1 Tax=Amphrit... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 167..280
e-value: 2.1E-22
score: 79.9
NoneNo IPR availableGENE3D3.30.2350.10coord: 94..321
e-value: 1.4E-51
score: 177.0
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 18..69
NoneNo IPR availablePANTHERPTHR21600:SF43RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Acoord: 155..318
coord: 18..69
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 155..318
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 171..185
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 155..317

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11contigEcto-sp13_S_contig11:29752..33550 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11.875.1mRNA_Ecto-sp13_S_contig11.875.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11 29752..33550 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11.875.1 ID=prot_Ecto-sp13_S_contig11.875.1|Name=mRNA_Ecto-sp13_S_contig11.875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=322bp
MSQKKCSKEEDSCNQHSNSDSGVDVIFSDTDMVVLNKPTGLRTVPGKAVG
PEAETRVHVEWHSGTKRQRQEFWTNVVHTACDSLLNDEKTEGEEEFRDHL
RRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDMVSARLWDTVDGHLKKVV
GPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRE
RVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHT
NWERIKWKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGKA
KSDRLLLHARRISFPHVSEHP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf