prot_Ecto-sp13_S_contig10907.810.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10907.810.1
Unique Nameprot_Ecto-sp13_S_contig10907.810.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length201
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10907.810.1 vs. uniprot
Match: A0A6H5KF56_9PHAE (TRAF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF56_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 7.880e-78
Identity = 146/156 (93.59%), Postives = 148/156 (94.87%), Query Frame = 0 
Query:    1 VNGGGGERPEPGXXXXXXXXXXXXXXXXXXXXGQERRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVVCPGCCRAVHVAEFGRHLLGHSAASESPALNPPGCPLRAYGCLTCRAAPSATTTNSCGGSGS 156
            V+GG GERPEPGXXXXXXXXXXXXXXXXXXXX Q RRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGC WKGTRRQRRRHLAACPMWQV+CPGCCRAVHVAEFGRHLLGHSAASESPALNPPGCPLRAYGCL CRAAP ATT NSC GSGS
Sbjct:  653 VDGGSGERPEPGXXXXXXXXXXXXXXXXXXXXXQGRRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCVWKGTRRQRRRHLAACPMWQVMCPGCCRAVHVAEFGRHLLGHSAASESPALNPPGCPLRAYGCLACRAAPPATT-NSCSGSGS 807
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BLAST of mRNA_Ecto-sp13_S_contig10907.810.1 vs. uniprot
Match: D8LM48_ECTSI (TRAF-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM48_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 3.150e-49
Identity = 99/105 (94.29%), Postives = 100/105 (95.24%), Query Frame = 0 
Query:    1 VNGGGGERPEPGXXXXXXXXXXXXXXXXXXXXGQERRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVVCPGCCRAVHV 105
            VNGG GERPEPGXXXX  XXXXXXXXXXXXX GQ RRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQV+CPGCCRAVHV
Sbjct:  495 VNGGSGERPEPGXXXXWRXXXXXXXXXXXXXSGQGRRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVMCPGCCRAVHV 599
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10907.810.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF56_9PHAE7.880e-7893.59TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LM48_ECTSI3.150e-4994.29TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 36..86
e-value: 1.8E-7
score: 33.3
IPR001293Zinc finger, TRAF-typePFAMPF15965zf-TRAF_2coord: 38..96
e-value: 6.9E-8
score: 32.9
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 55..99
score: 9.0
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 38..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10907contigEcto-sp13_S_contig10907:1773..4149 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10907.810.1mRNA_Ecto-sp13_S_contig10907.810.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10907 1772..4149 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10907.810.1 ID=prot_Ecto-sp13_S_contig10907.810.1|Name=mRNA_Ecto-sp13_S_contig10907.810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
VNGGGGERPEPGGGGGWREEGGRGRDGEVGGTGQERRPCRLQCGAAPKIE
DAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVVCPGCC
RAVHVAEFGRHLLGHSAASESPALNPPGCPLRAYGCLTCRAAPSATTTNS
CGGSGSSNSCGGSGSSKSCTGSGSSNSCGGSGSSNSCGGSGSSKSCTGSG
S
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like