mRNA_Ecto-sp13_S_contig10907.810.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10907.810.1
Unique NamemRNA_Ecto-sp13_S_contig10907.810.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10907.810.1 vs. uniprot
Match: A0A6H5KF56_9PHAE (TRAF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF56_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 7.880e-78
Identity = 146/156 (93.59%), Postives = 148/156 (94.87%), Query Frame = 1 
Query:    1 VNGGGGERPEPGXXXXXXXXXXXXXXXXXXXXGQERRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVVCPGCCRAVHVAEFGRHLLGHSAASESPALNPPGCPLRAYGCLTCRAAPSATTTNSCGGSGS 468
            V+GG GERPEPGXXXXXXXXXXXXXXXXXXXX Q RRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGC WKGTRRQRRRHLAACPMWQV+CPGCCRAVHVAEFGRHLLGHSAASESPALNPPGCPLRAYGCL CRAAP ATT NSC GSGS
Sbjct:  653 VDGGSGERPEPGXXXXXXXXXXXXXXXXXXXXXQGRRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCVWKGTRRQRRRHLAACPMWQVMCPGCCRAVHVAEFGRHLLGHSAASESPALNPPGCPLRAYGCLACRAAPPATT-NSCSGSGS 807
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BLAST of mRNA_Ecto-sp13_S_contig10907.810.1 vs. uniprot
Match: D8LM48_ECTSI (TRAF-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM48_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 3.150e-49
Identity = 99/105 (94.29%), Postives = 100/105 (95.24%), Query Frame = 1 
Query:    1 VNGGGGERPEPGXXXXXXXXXXXXXXXXXXXXGQERRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVVCPGCCRAVHV 315
            VNGG GERPEPGXXXX  XXXXXXXXXXXXX GQ RRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQV+CPGCCRAVHV
Sbjct:  495 VNGGSGERPEPGXXXXWRXXXXXXXXXXXXXSGQGRRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVMCPGCCRAVHV 599
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10907.810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF56_9PHAE7.880e-7893.59TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LM48_ECTSI3.150e-4994.29TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10907contigEcto-sp13_S_contig10907:1772..4149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size604
Hectar predicted targeting categoryother localisation
Exons3
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462562.775673-CDS-Ecto-sp13_S_contig10907:1772..20561681462562.775673-CDS-Ecto-sp13_S_contig10907:1772..2056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10907 1773..2056 -
1681462562.7861407-CDS-Ecto-sp13_S_contig10907:2971..31191681462562.7861407-CDS-Ecto-sp13_S_contig10907:2971..3119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10907 2972..3119 -
1681462562.7956674-CDS-Ecto-sp13_S_contig10907:3978..41491681462562.7956674-CDS-Ecto-sp13_S_contig10907:3978..4149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10907 3979..4149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10907.810.1prot_Ecto-sp13_S_contig10907.810.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10907 1773..4149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10907.810.1

>prot_Ecto-sp13_S_contig10907.810.1 ID=prot_Ecto-sp13_S_contig10907.810.1|Name=mRNA_Ecto-sp13_S_contig10907.810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
VNGGGGERPEPGGGGGWREEGGRGRDGEVGGTGQERRPCRLQCGAAPKIE
DAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVVCPGCC
RAVHVAEFGRHLLGHSAASESPALNPPGCPLRAYGCLTCRAAPSATTTNS
CGGSGSSNSCGGSGSSKSCTGSGSSNSCGGSGSSNSCGGSGSSKSCTGSG
S
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mRNA from alignment at Ecto-sp13_S_contig10907:1772..4149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10907.810.1 ID=mRNA_Ecto-sp13_S_contig10907.810.1|Name=mRNA_Ecto-sp13_S_contig10907.810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10907:1772..4149- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTAACGGCGGCGGTGGTGAGCGGCCAGAGCCAGGAGGCGGGGGAGGTTG
GCGTGAGGAGGGGGGGCGCGGTCGAGACGGCGAGGTGGGGGGTACGGGGC
AAGAGCGACGCCCATGCAGGCTGCAGTGCGGGGCCGCTCCCAAGATCGAA
GACGCTGAGGACCATTTGGAGGTAGGGTATACCGTGGGAATTAGTTGGGT
GGGGCAACTCTAGTATGTTGCTTTTGGGGTCGGCGGGCGGGGTCTGTTTT
TTTTTTTCCGACCTTGCACAAAGAATCCATCTCTGTCCACAGACGAAAAG
AGTGAGGAAAAAATCAATCTATCCCCACGTAAGATGAGAACCCAGGCTGA
ATTTTGTTTTCGGCGTCGACCGAGCTAACTGTGTAAGCAGATCGTGAGCT
TTAAGTGAGTGTTTCGAGTTTTTTTCGTGGCGGGTGGTGAATGAGGCAGG
CGTGTTTGGTGTTTACAGTATCGCGTGCTCTCTTTTGGTATCGAAGCCTG
GAGTTGGGTAAGAAGAGTAGACGGACGGAACTACATGCGGTTGTTGCTAA
TGCGCTATTTTTGAGCCTTGATTGGACTACGGTTGTGTTGCGACCTTTCC
TCCGCTGGCACGACGCAAAAATATCGCACAAGAAAACGCCTTTTCACAGC
CGAGGGTAAAGGTTTCCTCGCCGGTCCGCGGGCTTTTCTGCTGTCTCTTC
TCCGCGGCGTGCTATTGAAAGTTTCAGCTTTGTTGGGAACGAAGCCTGCT
TTCATTCGTTGCCCCGTGTGTTCTCGTCGCATTTCGTTCGAATGAGAGCA
TCTTGATCGTCCCTGACGCAGCATCTGCTCCTCCTGTCAAACCGAACTTC
TTCCATACAGTACCGGCGAAAAACGCACACGTATATACACACAAGCACGT
CATCAGGGCTCCACCCTATTCCGTTCACCAACCCAAGCCTTCTTCACCCA
CCCACCCCCGGATGCGTTTACATGATGAGTACCCCTCCTATGTCGGCTGC
GCTGGGTGTGCACCGATTCGTGCCTGACAGGTCTGCCCCCTGGCCCCCGT
TGACTGCCTGCTCCGAGCGGATGGGTGCGATTGGAAGGGGACGCGGCGGC
AGCGGCGGCGGCACCTAGCGGCCTGCCCCATGTGGCAAGTCGTGTGCCCC
GGGTGCTGCCGGGCGGTGCACGTTGCGGGTGCGTTCGTGTCCGGAATTCG
GTTTGTTTGTCGCCTTAGGTGGGCGCGGGGGGGCAGGTTTTCCCAGTGCT
TGCGGCGGCATTTTAATCGATCGGGCACCTCATGTACCATGCTGGACTTT
GTAACGTTGACACTGATTTTTTTTCATCTTTTGCCCATGGCCCAACGCTT
GGCGTTGTCTTTTGTCATGGTTTTTCAAGTTGCGGTTGGCGGTGACTGCT
GGTACTGTTGGTACGGAACGAGGTACATGGTGTGTTGGTGTTCCGCGTCA
AGTACACTTGACGTTGTGGAAGTTCTTTTAGCCCCGTAGTCGACGAAAAT
CCAAAACACGTCTCGAGGAGTCATGCGCGGTCACCGGTCATCCAGGAATC
TGGTGGTCATGTAATATTTCCCTGGGGCGCGATAGGCGGAAACGATGGCG
ATTCATTGATTCTTGCGGGGGTAGGTTCGCAACGCCTTCGGTGTAACGTA
GTCCCCGCGCTCTTTGACAGATGGAAGGGTACACAAGAAACAGCGATGAC
GAAACATGGACTCCGGTGAACATGCGAGCGCTTCTGCTCCCCTCGATTCG
CTTTCCCAGGCGGTACAAGTAATCGGCTTCTTATAGAAAGACCAAGACAT
TTGGAGGAGATATCGAAAACAGTGTGTTGGCTCAGAGAGAGTGTCAATGT
TAGATCCTCACTCGGTAGAGGACGTGATGGAGCAGCGACATGCGCTCACA
CGCCGCCCGCGTTTACATTTTTCGGTCGACGACAACGTCTAACAACACGC
CCTCCCTCCCTTTCTCCCTTCCCGCGTCTCCCACCCCGCTTCTTCTCGAC
CACCATTTCTTCGCGGACCACCGACCGTTTCGTTTTGGCCATCGGTCCCC
TCTGCGAACGTGCCGACTCACGAATAAAAAATAAATAAAAAAGAGTTCGG
CAGGCACCTACTCGGGCACTCCGCCGCTAGCGAGTCGCCGGCTCTCAACC
CCCCCGGCTGCCCCCTTCGCGCTTACGGTTGCCTCACCTGCCGGGCTGCT
CCTTCTGCCACCACCACCAATAGCTGTGGCGGCAGTGGAAGCAGCAACAG
CTGTGGCGGTAGTGGAAGCAGCAAAAGCTGTACCGGCAGTGGAAGCAGCA
ATAGCTGTGGCGGCAGTGGAAGCAGCAACAGCTGTGGCGGTAGTGGAAGC
AGCAAAAGCTGTACCGGCAGTGGAAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10907:1772..4149-

>mRNA_Ecto-sp13_S_contig10907.810.1 ID=mRNA_Ecto-sp13_S_contig10907.810.1|Name=mRNA_Ecto-sp13_S_contig10907.810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10907:1772..4149- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTAACGGCGGCGGTGGTGAGCGGCCAGAGCCAGGAGGCGGGGGAGGTTG
GCGTGAGGAGGGGGGGCGCGGTCGAGACGGCGAGGTGGGGGGTACGGGGC
AAGAGCGACGCCCATGCAGGCTGCAGTGCGGGGCCGCTCCCAAGATCGAA
GACGCTGAGGACCATTTGGAGGTCTGCCCCCTGGCCCCCGTTGACTGCCT
GCTCCGAGCGGATGGGTGCGATTGGAAGGGGACGCGGCGGCAGCGGCGGC
GGCACCTAGCGGCCTGCCCCATGTGGCAAGTCGTGTGCCCCGGGTGCTGC
CGGGCGGTGCACGTTGCGGAGTTCGGCAGGCACCTACTCGGGCACTCCGC
CGCTAGCGAGTCGCCGGCTCTCAACCCCCCCGGCTGCCCCCTTCGCGCTT
ACGGTTGCCTCACCTGCCGGGCTGCTCCTTCTGCCACCACCACCAATAGC
TGTGGCGGCAGTGGAAGCAGCAACAGCTGTGGCGGTAGTGGAAGCAGCAA
AAGCTGTACCGGCAGTGGAAGCAGCAATAGCTGTGGCGGCAGTGGAAGCA
GCAACAGCTGTGGCGGTAGTGGAAGCAGCAAAAGCTGTACCGGCAGTGGA
AGC
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