prot_Ecto-sp13_S_contig10887.794.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10887.794.1
Unique Nameprot_Ecto-sp13_S_contig10887.794.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length141
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10887.794.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 9.030e-33
Identity = 129/144 (89.58%), Postives = 130/144 (90.28%), Query Frame = 0 
Query:    1 MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISALFSALQLLTELRYYVNRASAVLESVPAVLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSSC----SISDGRSLETASERVASEC 140
            MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISA+FSALQLLTELRYYV  ASAVLE VP VLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         SISDGRSLETASERVA EC
Sbjct:  315 MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASAVLERVPVVLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSISDGRSLETASERVAREC 458
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10887.794.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.140e-8
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0 
Query:    1 MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISALFSALQLLTELRYYVNRASA 58
            MVR+VGETLVVD LFLALS  S    DG   GI   S +FS L+LLTEL+YYV+ A A
Sbjct:  367 MVRAVGETLVVDSLFLALSLSSETWEDGVSIGI--FSLIFSVLELLTELQYYVSEARA 422
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10887.794.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JME9_9PHAE9.030e-3389.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFA4_9PHAE3.140e-862.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..46
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..140
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10887contigEcto-sp13_S_contig10887:4093..4515 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10887.794.1mRNA_Ecto-sp13_S_contig10887.794.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10887 4093..4515 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10887.794.1 ID=prot_Ecto-sp13_S_contig10887.794.1|Name=mRNA_Ecto-sp13_S_contig10887.794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISALFSALQLLTELR
YYVNRASAVLESVPAVLADDDDDDDDGGGGGRTLSREEENQHSSVWSGSD
HSGSSSDDDSDGSSSSSLSSCSISDGRSLETASERVASEC*
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