mRNA_Ecto-sp13_S_contig10887.794.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10887.794.1
Unique NamemRNA_Ecto-sp13_S_contig10887.794.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10887.794.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 9.030e-33
Identity = 129/144 (89.58%), Postives = 130/144 (90.28%), Query Frame = 1 
Query:    1 MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISALFSALQLLTELRYYVNRASAVLESVPAVLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSSC----SISDGRSLETASERVASEC 420
            MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISA+FSALQLLTELRYYV  ASAVLE VP VLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         SISDGRSLETASERVA EC
Sbjct:  315 MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASAVLERVPVVLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSISDGRSLETASERVAREC 458
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BLAST of mRNA_Ecto-sp13_S_contig10887.794.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.140e-8
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISALFSALQLLTELRYYVNRASA 174
            MVR+VGETLVVD LFLALS  S    DG   GI   S +FS L+LLTEL+YYV+ A A
Sbjct:  367 MVRAVGETLVVDSLFLALSLSSETWEDGVSIGI--FSLIFSVLELLTELQYYVSEARA 422
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10887.794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JME9_9PHAE9.030e-3389.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFA4_9PHAE3.140e-862.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10887contigEcto-sp13_S_contig10887:4093..4515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size423
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-15_003220.1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.2957678-CDS-Ecto-sp13_S_contig10887:4092..45151681462561.2957678-CDS-Ecto-sp13_S_contig10887:4092..4515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10887 4093..4515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10887.794.1prot_Ecto-sp13_S_contig10887.794.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10887 4093..4515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10887.794.1

>prot_Ecto-sp13_S_contig10887.794.1 ID=prot_Ecto-sp13_S_contig10887.794.1|Name=mRNA_Ecto-sp13_S_contig10887.794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISALFSALQLLTELR
YYVNRASAVLESVPAVLADDDDDDDDGGGGGRTLSREEENQHSSVWSGSD
HSGSSSDDDSDGSSSSSLSSCSISDGRSLETASERVASEC*
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mRNA from alignment at Ecto-sp13_S_contig10887:4093..4515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10887.794.1 ID=mRNA_Ecto-sp13_S_contig10887.794.1|Name=mRNA_Ecto-sp13_S_contig10887.794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10887:4093..4515- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACGCTCGGTCGGGGAGACCCTGGTGGTCGACCCCCTTTTCTTGGC
GCTTTCCGCCGTGTCTAGGGGCGGCTGGGACGGTAGCCTGGCGGGCATAG
CCGGAATCTCCGCGCTGTTCTCCGCGCTGCAGCTGCTGACGGAGCTGCGA
TACTACGTTAATAGAGCCAGCGCAGTCCTAGAATCGGTCCCTGCTGTTCT
CGCTGATGATGATGATGATGATGATGACGGTGGTGGAGGTGGACGTACCC
TGTCGAGGGAAGAAGAGAACCAACACAGCAGCGTGTGGTCCGGGTCGGAC
CACAGCGGGTCTAGCTCCGATGATGATAGCGACGGGAGCTCGAGTTCGAG
CTTGAGTTCGTGCTCGATCTCTGATGGACGGAGCCTAGAGACTGCCTCCG
AGCGGGTTGCAAGTGAGTGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10887:4093..4515-

>mRNA_Ecto-sp13_S_contig10887.794.1 ID=mRNA_Ecto-sp13_S_contig10887.794.1|Name=mRNA_Ecto-sp13_S_contig10887.794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10887:4093..4515- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTACGCTCGGTCGGGGAGACCCTGGTGGTCGACCCCCTTTTCTTGGC
GCTTTCCGCCGTGTCTAGGGGCGGCTGGGACGGTAGCCTGGCGGGCATAG
CCGGAATCTCCGCGCTGTTCTCCGCGCTGCAGCTGCTGACGGAGCTGCGA
TACTACGTTAATAGAGCCAGCGCAGTCCTAGAATCGGTCCCTGCTGTTCT
CGCTGATGATGATGATGATGATGATGACGGTGGTGGAGGTGGACGTACCC
TGTCGAGGGAAGAAGAGAACCAACACAGCAGCGTGTGGTCCGGGTCGGAC
CACAGCGGGTCTAGCTCCGATGATGATAGCGACGGGAGCTCGAGTTCGAG
CTTGAGTTCGTGCTCGATCTCTGATGGACGGAGCCTAGAGACTGCCTCCG
AGCGGGTTGCAAGTGAGTGCTGA
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