prot_Ecto-sp13_S_contig10858.768.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10858.768.1
Unique Nameprot_Ecto-sp13_S_contig10858.768.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length193
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10858.768.1 vs. uniprot
Match: D8LG04_ECTSI (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG04_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 4.910e-116
Identity = 183/192 (95.31%), Postives = 184/192 (95.83%), Query Frame = 0 
Query:    1 MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCPLQVPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWRHEGSGPVNSATPSADGAAVGPNGAAALAHGGAGAVQKATAGGAEGGGVGVLPKGVGGKGAPGYSSSSSRG 192
            MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGC L VPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWR EGSGPVN ATPSA GAAVGPNGAAALAHG AG+ QKATA GAEGGGVGVLPKGVGGKGAPGYSSSSSRG
Sbjct:    1 MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLHVPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWRTEGSGPVNGATPSAGGAAVGPNGAAALAHGRAGSAQKATAEGAEGGGVGVLPKGVGGKGAPGYSSSSSRG 192
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BLAST of mRNA_Ecto-sp13_S_contig10858.768.1 vs. uniprot
Match: A0A6H5JGA7_9PHAE (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA7_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.260e-54
Identity = 97/116 (83.62%), Postives = 99/116 (85.34%), Query Frame = 0 
Query:    1 MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCPLQVPREALERIDDDVDQNPELFAQELLAR-----CKDESGQLSARVLGIK 111
            MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGC LQVPREALERIDDDVDQNPE+FAQELLA      C D     +A  L  K
Sbjct:    1 MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLQVPREALERIDDDVDQNPEIFAQELLASQPCTLCADGEHHTNAVYLAFK 116
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BLAST of mRNA_Ecto-sp13_S_contig10858.768.1 vs. uniprot
Match: A0A835Z750_9STRA (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z750_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.160e-13
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 0 
Query:   22 VVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCPLQVPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWRHEG 125
            VV+ L+++EN IENF E   +  FS++N Y+  L+ + +    C   VP +ALER+D++ + NPE+F+ ELL RC+ E   +  +  GI+++R+ V + WR  G
Sbjct:    4 VVLTLDELENRIENFVEE--KPLFSQINAYVDKLQALSDARETCDADVPVQALERLDNNFNNNPEVFSLELLQRCRAEFDAVRNKAEGIRQLREGVAD-WRGGG 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10858.768.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG04_ECTSI4.910e-11695.31Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5JGA7_9PHAE1.260e-5483.62Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z750_9STRA8.160e-1338.46Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 19..39
IPR019145Mediator complex, subunit Med10PFAMPF09748Med10coord: 18..119
e-value: 1.5E-8
score: 34.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10858contigEcto-sp13_S_contig10858:1894..4806 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10858.768.1mRNA_Ecto-sp13_S_contig10858.768.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10858 816..5387 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10858.768.1 ID=prot_Ecto-sp13_S_contig10858.768.1|Name=mRNA_Ecto-sp13_S_contig10858.768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNE
YITNLKKVEEKAPGCPLQVPREALERIDDDVDQNPELFAQELLARCKDES
GQLSARVLGIKKVRQTVMEGWRHEGSGPVNSATPSADGAAVGPNGAAALA
HGGAGAVQKATAGGAEGGGVGVLPKGVGGKGAPGYSSSSSRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019145Mediator_Med10