mRNA_Ecto-sp13_S_contig10858.768.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10858.768.1
Unique NamemRNA_Ecto-sp13_S_contig10858.768.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10858.768.1 vs. uniprot
Match: D8LG04_ECTSI (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG04_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 1.230e-110
Identity = 183/192 (95.31%), Postives = 184/192 (95.83%), Query Frame = 3 
Query:  222 MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCPLQVPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWRHEGSGPVNSATPSADGAAVGPNGAAALAHGGAGAVQKATAGGAEGGGVGVLPKGVGGKGAPGYSSSSSRG 797
            MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGC L VPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWR EGSGPVN ATPSA GAAVGPNGAAALAHG AG+ QKATA GAEGGGVGVLPKGVGGKGAPGYSSSSSRG
Sbjct:    1 MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLHVPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWRTEGSGPVNGATPSAGGAAVGPNGAAALAHGRAGSAQKATAEGAEGGGVGVLPKGVGGKGAPGYSSSSSRG 192
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BLAST of mRNA_Ecto-sp13_S_contig10858.768.1 vs. uniprot
Match: A0A6H5JGA7_9PHAE (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA7_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 3.660e-50
Identity = 97/116 (83.62%), Postives = 99/116 (85.34%), Query Frame = 3 
Query:  222 MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCPLQVPREALERIDDDVDQNPELFAQELLAR-----CKDESGQLSARVLGIK 554
            MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGC LQVPREALERIDDDVDQNPE+FAQELLA      C D     +A  L  K
Sbjct:    1 MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCQLQVPREALERIDDDVDQNPEIFAQELLASQPCTLCADGEHHTNAVYLAFK 116
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BLAST of mRNA_Ecto-sp13_S_contig10858.768.1 vs. uniprot
Match: A0A835Z750_9STRA (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z750_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.050e-11
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 3 
Query:  285 VVMDLNDMENMIENFEESAAESFFSKMNEYITNLKKVEEKAPGCPLQVPREALERIDDDVDQNPELFAQELLARCKDESGQLSARVLGIKKVRQTVMEGWRHEG 596
            VV+ L+++EN IENF E   +  FS++N Y+  L+ + +    C   VP +ALER+D++ + NPE+F+ ELL RC+ E   +  +  GI+++R+ V + WR  G
Sbjct:    4 VVLTLDELENRIENFVEE--KPLFSQINAYVDKLQALSDARETCDADVPVQALERLDNNFNNNPEVFSLELLQRCRAEFDAVRNKAEGIRQLREGVAD-WRGGG 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10858.768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG04_ECTSI1.230e-11095.31Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5JGA7_9PHAE3.660e-5083.62Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z750_9STRA2.050e-1138.46Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10858contigEcto-sp13_S_contig10858:816..5387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.2
Seed ortholog evalue6e-07
Seed eggNOG ortholog653948.CCA20712
Model size1878
KEGG koko:K15151
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Transcription factor subunit Med10 of Mediator complex
EggNOG OGs2CB04@1,2S39K@2759
Ec32 ortholog descriptionMediator complex, subunit Med10
Ec32 orthologEc-21_005090.1
Cds size579
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10858.768.1prot_Ecto-sp13_S_contig10858.768.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10858 1894..4806 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462559.4302726-UTR-Ecto-sp13_S_contig10858:815..18931681462559.4302726-UTR-Ecto-sp13_S_contig10858:815..1893Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10858 816..1893 -
1681462559.4762523-UTR-Ecto-sp13_S_contig10858:4806..49451681462559.4762523-UTR-Ecto-sp13_S_contig10858:4806..4945Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10858 4807..4945 -
1681462559.485516-UTR-Ecto-sp13_S_contig10858:5305..53871681462559.485516-UTR-Ecto-sp13_S_contig10858:5305..5387Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10858 5306..5387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462559.4402666-CDS-Ecto-sp13_S_contig10858:1893..21881681462559.4402666-CDS-Ecto-sp13_S_contig10858:1893..2188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10858 1894..2188 -
1681462559.4486494-CDS-Ecto-sp13_S_contig10858:2809..28691681462559.4486494-CDS-Ecto-sp13_S_contig10858:2809..2869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10858 2810..2869 -
1681462559.4576306-CDS-Ecto-sp13_S_contig10858:3284..33651681462559.4576306-CDS-Ecto-sp13_S_contig10858:3284..3365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10858 3285..3365 -
1681462559.46663-CDS-Ecto-sp13_S_contig10858:4663..48061681462559.46663-CDS-Ecto-sp13_S_contig10858:4663..4806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10858 4664..4806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10858.768.1

>prot_Ecto-sp13_S_contig10858.768.1 ID=prot_Ecto-sp13_S_contig10858.768.1|Name=mRNA_Ecto-sp13_S_contig10858.768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MSGDQPQPDPGTKALLGSLESVVMDLNDMENMIENFEESAAESFFSKMNE
YITNLKKVEEKAPGCPLQVPREALERIDDDVDQNPELFAQELLARCKDES
GQLSARVLGIKKVRQTVMEGWRHEGSGPVNSATPSADGAAVGPNGAAALA
HGGAGAVQKATAGGAEGGGVGVLPKGVGGKGAPGYSSSSSRG*
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mRNA from alignment at Ecto-sp13_S_contig10858:816..5387-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10858.768.1 ID=mRNA_Ecto-sp13_S_contig10858.768.1|Name=mRNA_Ecto-sp13_S_contig10858.768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4572bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10858:816..5387- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCATGGGGATGCCATGTCGAAATTTCAGCTTCTAATTCGATAAAACCGC
GTGGGAATCGCGAGATCCTCACGTTCCCTCAGGTGTCTAGTGTGTTGTAT
CGGATTGTTTACTCGGCCATAACTTCTGATGGAAGATGCCGTGAACCTTG
AAACTGCCATCTATGCTCTCGTATACAGATGTTTTTGTACTTAGCACCAG
CTGGTATCACTGATAAATCATCAGTGTATAGACTTATTTAGACACGAAAT
AAGTCCAGTACCCAGCCGGTTTCCCTCCACTCACTGAAAATACTTCACCA
CATCCCGTTCGACTGTGGGTATATCTCGAATTGGTAGTCTTTCTGTGCGG
GCGAATATTTTGGTTCTCGTTTCGAACCACCGGCCCTGTCTCATAATCTC
GCCGCTATCGCCGTCCTTGCCGCTCCCCCGCACGCGGAGCAGACAATCGC
CTCGCTCGCTCCGTCTCCCAAGCCACCACCAACACGCTCGCAGGACTCTT
CTTGCGCATGGTACGGCGAAAAAGGCAAAGAAGCGTTGCGCTCACAGTAG
CAGTCTTTCTACTTCGACCTCCGTTTTCACCATGAGTGGCGATCAGCCTC
AGCCGGATCCCGGAACCAAGGCTCTGCTGGGGAGCCTGGAAAGCGTAGTG
ATGGACCTCAACGACATGGAGAACATGATCGAAAACTTCGAGGAATCTGC
GGCGGAGTCGTTCTTCTCGAAAATGTGAAAGAGGAGGGAGTATGTCATGG
CGGCCTTGTTAAAGGAATACGGCTAATTTGACGTCCAGGAGAGACTGCAT
GCCGTGTACACCCCTCGCGTCCGCTTACTAAAAACCGTTCAGGTTTTCCT
CAACCAGTGACGAAAGCTTTGGGTGTTAGACTACTGCTGACTTACCGCTG
TGCAAACAAAGCGTAGGCTGGGAAATGAGTGAGGGGGGCGACTATACCCT
GTGTTGTTAGATGCGCCCAGCAAGACTTGTTGCTGTAGGTTATTATCAAC
ACTACCAGCCGAGTCCAAGACAGCCGCGCGCCGCCCGCTGGGTTTGCATG
TTTATGTGGGCAATGAAGGGTGAACGTGTCCTTGTCGAATGTTGCCGGTG
TGCCGAGCGAGACACGTCAATATAATCAGAAGAGGAGACAATGCCTCTGC
GCGCTTACCTGACCAGTGGAATGCTGTTGGCTTAGACAAATAGTCTATCG
AATAAAGGATGTTCTCTCGCTTTTGCATCGGGCGAGACTTCGCAGTGCTT
GCGTGTGAAAGAGAACGACCGTGTGGAAGTGGGACATGTTCTGATTTTCC
ACAAGCCTAGCCCACCTGTGACGGTTTGCTGAGGGTTGCTTCCTCTTCGG
TAGACGCCGCACTTTCATCAATCTTTGCATGTTTCTCTTCTGCTTGTCTT
GTCTGCCTCTCTGTCCCTGTCTGTCTCTGTCTGTCTCTGTCTCTGTCTCT
GTCTCTGTATGTCTGTCTGTCTATCTCTGTCTGTCTGCCTCTGTATGTCT
GTCTGTCTATCTCTGTCTGTCTTTCTATCTCTGTCTCTCTGTCTCTCTCT
GTCTTTCTCTCTGTCTCTCTCTCTCTCTCTGTCTCTCTGTCTCTCTCTCT
GTCTCTCTCTCTCTCTCTCACTCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTTTTCTTTTTCTTTTCTCTCCTTTCCCCTCTCGACCCTTCTCATTTTCT
CCTTATCCTTCTCTCTTTCACTTGCCNNNNNNNNNNTCTCTTTTCTTCTC
TTTTTTTCTCTCTTTCTCTTTCTCTCTCTCTTTCTCTCTTTCCCTCCCTC
TTTTCCCTCCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTTCTCTTT
TTCTCTCTTTCTCTCGCCCTCCCTCTCGCTCTCCTTCTCCTTGCGCGTGT
CAAGTTTGCTTCGGGAACCTTCGTTTTGAGTTGTACGCGCTGCTTATCAT
GGTCCCCCCCTCCCCGGCCACAAATGCATGCACCTCTCCTTTCGTCCCTC
GATACTCGCTGTGCGATGCAAGGAACGAGTACATCACGAACCTCAAGAAG
GTGGAGGAGAAAGCGCCAGGGTGCCCACTACAAGTGCCTCGCGAAGCCCT
TGAGTGAGTGAGATACCGTAAAATTGTCCCGACGCAATGTTACATCTTTT
TCGCTTGGTTGTTGTTGTCCGTGCTATGTCGCCTGTGGTTGTTGCGCCGC
TTTTCGCGGCCGGCGTCTCTAAGGCGCACTTGGCTGTCTTCGTGTAGATT
TCTCTGGTAGCCGAAATATGATATCAACCATGGCGTCGGCTGCCTGTTAC
TGGTGACGTCTGTGTTGACTGTCTGTGGCTTGCGGATACAATTTTCTTGA
GAAAGTCGTTCCTTGCCCTGCCGCAGACACGGAATCCGATCATGCGTGTA
AGGGCTCTCCCTACGCAACGCTTCATTTGCTGCCGTTCGGTGGGTTTGCC
CTCGCCCATATCCTGTCTCGTCTCCTTGCTCGATGTGTGTCTGTCTTATT
CTCTGCCCGTCTGAGCAGGAGAATCGATGACGACGTAGACCAGAACCCGG
AGCTTTTCGCGCAAGAGCTTCTTGCCAGGTGCATACTATCATCGTTTGAT
GTCTCGCCACCATCCAAAGCTCCCGTCACACACAAATACTGCTGTAGTCT
AGCACTTAAAGTTGATCATCACAGCAGTGCATTCAGTAGATGCTGTTAGA
AAACCTCGTGATGTGTCCCCCCACCAAAAAACGTGCCCGCTTTGTTCGTG
CTTAAGAAGAAAGAGGTGTAGAGGGGTTGCTTGAATGCTTACATAAAACG
GTAAAGATTAAGGCAGGGATCCTCTCTCTTCTGTGTAAGGTGAGCATGGG
TAGTTGGTATATTGGGAGAATGAATGTAGACCGAGCACGAGCCGATAACA
AGAGTTGATGGTTTCGGCACCGCCGCATGCCTGTAAAGCCCCCAATGGCT
GAAACCGCCTTGTTGCTGTCGTCTCTCGATGACCCCCCGGCCTGGTCCGG
TGAGAACCCGGCGTGCTCCGTCCCGGTTTGTAGGGATGCGAGGTCAATGG
TCTAGCGCTGCGTCATGCGTTTACCCAAGCATCCCCCCCCTCTGCACGTT
GTTGAGCAAACCCTGCACGTTGTTCGCGGGTGGCGAGCATCACACCAACG
CTGTGCATCAAGCACTCAAGCTATACCTGCCGTGACAACGGCACCGCAGG
TGCAAAGACGAGTCCGGGCAGCTGAGCGCGAGAGTCCTCGGCATAAAAAA
AGTGCGTCAAACCGTCATGGAGGGCTGGAGACACGAAGGCAGCGGGCCTG
TCAACAGTGCCACGCCGTCCGCGGATGGTGCTGCTGTTGGACCAAACGGG
GCGGCAGCTTTGGCACACGGTGGGGCAGGTGCAGTACAGAAGGCAACAGC
AGGAGGGGCTGAGGGAGGAGGGGTCGGCGTCTTGCCGAAGGGGGTAGGTG
GAAAGGGCGCGCCTGGTTACAGCAGCAGCAGCAGCCGTGGTTAAGTGAGC
GTCGATCCTCTTTTGTGGTAGTCCTCTTTCTTTGTCGTTTCTATCCCACA
GGCTGTTTGTGCAGGATGGTGAGGGGCTGAGAGGGAGCCATGTGCGCAAC
GACAACAGCAGCAGTGAGTGATGGATGCCATCCCTGCCTTGTCCAGTTTG
GCAGGTCGTACACTCCTGGTTCGCCGAGGGAATACCTGCACGGGGCGAGG
AGGGGTCCTTGATGGAACCTCCTCACTCTTGAGAAAATGAAAAAGAAACT
ACATGTACGAAGAAGGTAATTGTGTTATGCAGTTCGGGCGGGCGCTGTGG
TTGAGCTTGACAAATGCCCGAAGTGGCGCATGACGTAGGTTTCCTTTCGG
ACACAAGGGTATCGGCGCCTGTCAATGATGGCCACACCTTTACACGTCTC
ATCGAAGAACCTGAGGTTTGTCAGATTTGTTTCGGAGCGACATCCCGCAT
GGATTTCTCCTGTTAGTCGTGCTTGGTTTCACTTGGTCCCGATGTCAATG
TGATGTCGTCCTTTTAATGTTTTTGGTGTTTTTGTGTGTCCCACACCGAG
GTTGAGGGGGAGGGATGGGCGTTGTGGGGGGTTCCTGAGTGGCGTGCCTA
TTTTTGGCGTAGTTATCGGCTTGTGTTGTTGTGCCTGCTCCTCCTTGCTT
AGACGTATGTTGTATTTCCTGTGTGCGGTGGACTATGCCTTAGGTTTCGA
GCTACAGGCTCGGTGTTTGGCATTTGTATGGCGAGTAGTAGACACCAGAC
TGAACCTCTCGTGAGAGAGTGAGAGCAGCGGCAGCATCATCATCTGCTGG
CTGCACTTGCTGCTTGTACGCAGGTTCAGAAGTAATATGCTGTTTTAGGG
TGGGATGAAACGTCAAAAACATATCTCCGTCAGGTCATCTGACAAGGTCA
CAATATGTGCCACCAGACAGTTACTTTGGCGATACGGCATTCACACTTCA
ATTAAAACCTGGTTTACTCCTCTCATAGATGTGAAACGGTTGTACTGTAG
TCCCCTCGCACGGATCGGCTGTGCATACGAATAGGACTGCGTACATTTGG
TCTTGCCTACCCAGCAACTAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10858:816..5387-

>mRNA_Ecto-sp13_S_contig10858.768.1 ID=mRNA_Ecto-sp13_S_contig10858.768.1|Name=mRNA_Ecto-sp13_S_contig10858.768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10858:816..5387- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGGCGATCAGCCTCAGCCGGATCCCGGAACCAAGGCTCTGCTGGG
GAGCCTGGAAAGCGTAGTGATGGACCTCAACGACATGGAGAACATGATCG
AAAACTTCGAGGAATCTGCGGCGGAGTCGTTCTTCTCGAAAATGAACGAG
TACATCACGAACCTCAAGAAGGTGGAGGAGAAAGCGCCAGGGTGCCCACT
ACAAGTGCCTCGCGAAGCCCTTGAGAGAATCGATGACGACGTAGACCAGA
ACCCGGAGCTTTTCGCGCAAGAGCTTCTTGCCAGGTGCAAAGACGAGTCC
GGGCAGCTGAGCGCGAGAGTCCTCGGCATAAAAAAAGTGCGTCAAACCGT
CATGGAGGGCTGGAGACACGAAGGCAGCGGGCCTGTCAACAGTGCCACGC
CGTCCGCGGATGGTGCTGCTGTTGGACCAAACGGGGCGGCAGCTTTGGCA
CACGGTGGGGCAGGTGCAGTACAGAAGGCAACAGCAGGAGGGGCTGAGGG
AGGAGGGGTCGGCGTCTTGCCGAAGGGGGTAGGTGGAAAGGGCGCGCCTG
GTTACAGCAGCAGCAGCAGCCGTGGTTAA
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