prot_Ecto-sp13_S_contig10857.767.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10857.767.1
Unique Nameprot_Ecto-sp13_S_contig10857.767.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length51
Homology
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 9.500e-27
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0
Query:    2 QGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 50
            +GVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF
Sbjct:   27 KGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 75          
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.100e-12
Identity = 29/50 (58.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query:    2 QGVLRGYDPFMNLVLDETTD-PASSDKKM-GMVIIRGNSVVQFEILDPLR 49
            +GVLRGYD FMN+VLDE  + P+ +++++ GMV+IRGNSV++FE+LDP++
Sbjct:   28 RGVLRGYDQFMNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPVQ 77          
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.050e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    3 GVLRGYDPFMNLVLDETTDPASSDKK-MGMVIIRGNSVVQFEILDPL 48
            GVLRG+D FMN+VLDET D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:   29 GVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 75          
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: W7TL56_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL56_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.840e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    3 GVLRGYDPFMNLVLDETTDPASSDKK-MGMVIIRGNSVVQFEILDPL 48
            GVLRG+D FMN+VLDET D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:   42 GVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 88          
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A6P8J6H9_ACTTE (Small nuclear ribonucleoprotein G n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8J6H9_ACTTE)

HSP 1 Score: 63.2 bits (152), Expect = 6.020e-12
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    3 GVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 48
            GVLRGYDPFMNLVLDE  + AS+ +K  +GMV+IRGNS+V  E LD +
Sbjct:   29 GVLRGYDPFMNLVLDEAVEDASATEKHSIGMVVIRGNSIVTMESLDRI 76          
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: U9SHN2_RHIID (Small nuclear ribonucleoprotein G n=6 Tax=Glomeraceae TaxID=36751 RepID=U9SHN2_RHIID)

HSP 1 Score: 62.4 bits (150), Expect = 1.210e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    3 GVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 48
            G+LRGYDPFMNLVLD+T +  SS +K  +GMV+IRGNSVV  E L+ +
Sbjct:   29 GILRGYDPFMNLVLDDTVEEVSSSEKHNVGMVVIRGNSVVIMEALEKI 76          
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A137PBC0_CONC2 (Small nuclear ribonucleoprotein G n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PBC0_CONC2)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-11
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:    2 QGVLRGYDPFMNLVLDETTDPAS--SDKKMGMVIIRGNSVVQFEILDPLR 49
            +G+LRG+DPFMNLV+DE+       SDK +GM++IRGNS+V  E L+PL 
Sbjct:   28 RGILRGFDPFMNLVIDESVQFGENMSDKDVGMIVIRGNSIVTIEALEPLH 77          
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A8C5PA50_9ANUR (Small nuclear ribonucleoprotein G n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PA50_9ANUR)

HSP 1 Score: 61.6 bits (148), Expect = 1.700e-11
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    2 QGVLRGYDPFMNLVLDETTDPASS--DKKMGMVIIRGNSVVQFEILD 46
            QG+LRG+DPFMNLVLDE+T+ A+S     +GMV+IRGNS++  E L+
Sbjct:   13 QGILRGFDPFMNLVLDESTEVAASGTQNNVGMVVIRGNSIIMLEALE 59          
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: UPI00077ADAFD (small nuclear ribonucleoprotein G-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077ADAFD)

HSP 1 Score: 61.6 bits (148), Expect = 2.510e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    3 GVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILD 46
            GVLRG+DPFMNLVLDE  + AS+ +K  +GMV+IRGNS+V  E LD
Sbjct:   29 GVLRGFDPFMNLVLDEAIEEASAQQKNNIGMVVIRGNSIVTMEALD 74          
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A2K5C4X9_AOTNA (Small nuclear ribonucleoprotein G n=17 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K5C4X9_AOTNA)

HSP 1 Score: 60.5 bits (145), Expect = 7.010e-11
Identity = 26/49 (53.06%), Postives = 40/49 (81.63%), Query Frame = 0
Query:    2 QGVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 48
            QG+LRG+DPFMNLV+DE  + A+S ++  +GMV+I+GNS++  E L+P+
Sbjct:   28 QGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIQGNSIIMLEALEPV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR0_ECTSI9.500e-2797.96Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
A0A835YWI2_9STRA1.100e-1258.00Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A4D9CNZ1_9STRA2.050e-1265.96Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
W7TL56_9STRA2.840e-1265.96Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
A0A6P8J6H9_ACTTE6.020e-1264.58Small nuclear ribonucleoprotein G n=2 Tax=Actiniar... [more]
U9SHN2_RHIID1.210e-1162.50Small nuclear ribonucleoprotein G n=6 Tax=Glomerac... [more]
A0A137PBC0_CONC21.240e-1156.00Small nuclear ribonucleoprotein G n=1 Tax=Conidiob... [more]
A0A8C5PA50_9ANUR1.700e-1159.57Small nuclear ribonucleoprotein G n=1 Tax=Leptobra... [more]
UPI00077ADAFD2.510e-1165.22small nuclear ribonucleoprotein G-like n=2 Tax=Acr... [more]
A0A2K5C4X9_AOTNA7.010e-1153.06Small nuclear ribonucleoprotein G n=17 Tax=Boreoeu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..42
e-value: 3.2E-12
score: 46.0
NoneNo IPR availableGENE3D2.30.30.100coord: 1..48
e-value: 9.3E-13
score: 49.7
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 2..48
NoneNo IPR availablePANTHERPTHR10553:SF2SMALL NUCLEAR RIBONUCLEOPROTEIN Gcoord: 2..48
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10857contigEcto-sp13_S_contig10857:5241..5393 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10857.767.1mRNA_Ecto-sp13_S_contig10857.767.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10857 5241..5393 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10857.767.1 ID=prot_Ecto-sp13_S_contig10857.767.1|Name=mRNA_Ecto-sp13_S_contig10857.767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
FQGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf