mRNA_Ecto-sp13_S_contig10857.767.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10857.767.1
Unique NamemRNA_Ecto-sp13_S_contig10857.767.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 9.500e-27
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    4 QGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 150
            +GVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF
Sbjct:   27 KGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 75
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.100e-12
Identity = 29/50 (58.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 QGVLRGYDPFMNLVLDETTD-PASSDKKM-GMVIIRGNSVVQFEILDPLR 147
            +GVLRGYD FMN+VLDE  + P+ +++++ GMV+IRGNSV++FE+LDP++
Sbjct:   28 RGVLRGYDQFMNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPVQ 77
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.050e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    7 GVLRGYDPFMNLVLDETTDPASSDKK-MGMVIIRGNSVVQFEILDPL 144
            GVLRG+D FMN+VLDET D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:   29 GVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 75
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: W7TL56_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL56_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.840e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    7 GVLRGYDPFMNLVLDETTDPASSDKK-MGMVIIRGNSVVQFEILDPL 144
            GVLRG+D FMN+VLDET D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:   42 GVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 88
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A6P8J6H9_ACTTE (Small nuclear ribonucleoprotein G n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8J6H9_ACTTE)

HSP 1 Score: 63.2 bits (152), Expect = 6.020e-12
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    7 GVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 144
            GVLRGYDPFMNLVLDE  + AS+ +K  +GMV+IRGNS+V  E LD +
Sbjct:   29 GVLRGYDPFMNLVLDEAVEDASATEKHSIGMVVIRGNSIVTMESLDRI 76
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: U9SHN2_RHIID (Small nuclear ribonucleoprotein G n=6 Tax=Glomeraceae TaxID=36751 RepID=U9SHN2_RHIID)

HSP 1 Score: 62.4 bits (150), Expect = 1.210e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    7 GVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 144
            G+LRGYDPFMNLVLD+T +  SS +K  +GMV+IRGNSVV  E L+ +
Sbjct:   29 GILRGYDPFMNLVLDDTVEEVSSSEKHNVGMVVIRGNSVVIMEALEKI 76
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A137PBC0_CONC2 (Small nuclear ribonucleoprotein G n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PBC0_CONC2)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-11
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    4 QGVLRGYDPFMNLVLDETTDPAS--SDKKMGMVIIRGNSVVQFEILDPLR 147
            +G+LRG+DPFMNLV+DE+       SDK +GM++IRGNS+V  E L+PL 
Sbjct:   28 RGILRGFDPFMNLVIDESVQFGENMSDKDVGMIVIRGNSIVTIEALEPLH 77
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A8C5PA50_9ANUR (Small nuclear ribonucleoprotein G n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PA50_9ANUR)

HSP 1 Score: 61.6 bits (148), Expect = 1.700e-11
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    4 QGVLRGYDPFMNLVLDETTDPASS--DKKMGMVIIRGNSVVQFEILD 138
            QG+LRG+DPFMNLVLDE+T+ A+S     +GMV+IRGNS++  E L+
Sbjct:   13 QGILRGFDPFMNLVLDESTEVAASGTQNNVGMVVIRGNSIIMLEALE 59
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: UPI00077ADAFD (small nuclear ribonucleoprotein G-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077ADAFD)

HSP 1 Score: 61.6 bits (148), Expect = 2.510e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    7 GVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILD 138
            GVLRG+DPFMNLVLDE  + AS+ +K  +GMV+IRGNS+V  E LD
Sbjct:   29 GVLRGFDPFMNLVLDEAIEEASAQQKNNIGMVVIRGNSIVTMEALD 74
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BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Match: A0A2K5C4X9_AOTNA (Small nuclear ribonucleoprotein G n=17 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K5C4X9_AOTNA)

HSP 1 Score: 60.5 bits (145), Expect = 7.010e-11
Identity = 26/49 (53.06%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    4 QGVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 144
            QG+LRG+DPFMNLV+DE  + A+S ++  +GMV+I+GNS++  E L+P+
Sbjct:   28 QGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIQGNSIIMLEALEPV 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10857.767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR0_ECTSI9.500e-2797.96Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
A0A835YWI2_9STRA1.100e-1258.00Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A4D9CNZ1_9STRA2.050e-1265.96Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
W7TL56_9STRA2.840e-1265.96Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
A0A6P8J6H9_ACTTE6.020e-1264.58Small nuclear ribonucleoprotein G n=2 Tax=Actiniar... [more]
U9SHN2_RHIID1.210e-1162.50Small nuclear ribonucleoprotein G n=6 Tax=Glomerac... [more]
A0A137PBC0_CONC21.240e-1156.00Small nuclear ribonucleoprotein G n=1 Tax=Conidiob... [more]
A0A8C5PA50_9ANUR1.700e-1159.57Small nuclear ribonucleoprotein G n=1 Tax=Leptobra... [more]
UPI00077ADAFD2.510e-1165.22small nuclear ribonucleoprotein G-like n=2 Tax=Acr... [more]
A0A2K5C4X9_AOTNA7.010e-1153.06Small nuclear ribonucleoprotein G n=17 Tax=Boreoeu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10857contigEcto-sp13_S_contig10857:5241..5393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score101.7
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D8LRR0
Preferred nameSNRPG
Model size153
KEGG koko:K11099
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034719,GO:0035770,GO:0036464,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045495,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Exons1
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsKOG1780@1,KOG1780@2759
Ec32 ortholog descriptionsmall nuclear ribonucleoprotein polypeptide G
Ec32 orthologEc-08_002090.1
Cds size153
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462559.3841157-CDS-Ecto-sp13_S_contig10857:5240..53931681462559.3841157-CDS-Ecto-sp13_S_contig10857:5240..5393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10857 5241..5393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10857.767.1prot_Ecto-sp13_S_contig10857.767.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10857 5241..5393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10857.767.1

>prot_Ecto-sp13_S_contig10857.767.1 ID=prot_Ecto-sp13_S_contig10857.767.1|Name=mRNA_Ecto-sp13_S_contig10857.767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
FQGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF
*
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mRNA from alignment at Ecto-sp13_S_contig10857:5241..5393-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10857.767.1 ID=mRNA_Ecto-sp13_S_contig10857.767.1|Name=mRNA_Ecto-sp13_S_contig10857.767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10857:5241..5393- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCAGGGCGTCTTGCGAGGTTACGACCCGTTCATGAACCTGGTGCTAGA
CGAGACGACTGACCCCGCCTCGTCCGACAAGAAGATGGGGATGGTCATCA
TCAGAGGAAACAGCGTCGTGCAGTTCGAGATCCTCGACCCGCTCCGCTTC
TAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10857:5241..5393-

>mRNA_Ecto-sp13_S_contig10857.767.1 ID=mRNA_Ecto-sp13_S_contig10857.767.1|Name=mRNA_Ecto-sp13_S_contig10857.767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10857:5241..5393- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCAGGGCGTCTTGCGAGGTTACGACCCGTTCATGAACCTGGTGCTAGA
CGAGACGACTGACCCCGCCTCGTCCGACAAGAAGATGGGGATGGTCATCA
TCAGAGGAAACAGCGTCGTGCAGTTCGAGATCCTCGACCCGCTCCGCTTC
TAA
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